ONTOLOGY REPORT - ANNOTATIONS
Term: protein K63-linked ubiquitination
Accession: GO:0070534
browse the term
Definition: A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is added to a protein. K63-linked ubiquitination does not target the substrate protein for degradation, but is involved in several pathways, notably as a signal to promote error-free DNA postreplication repair.
Synonyms: exact_synonym: protein K63-linked polyubiquitination
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ARIH2
ariadne RBR E3 ubiquitin protein ligase 2
involved_in
IDA
(PMID:19340006)
UniProt
PMID:19340006
NCBI chr 3:48,918,842...48,986,382
Ensembl chr 3:48,918,821...48,986,382
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ARRDC4
arrestin domain containing 4
involved_in
IDA
(PMID:28594402)
UniProt
PMID:28594402
NCBI chr15:97,960,703...97,973,833
Ensembl chr15:97,960,703...97,973,833
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BFAR
bifunctional apoptosis regulator
involved_in
IDA
(PMID:21068390)
ParkinsonsUK-UCL
PMID:21068390
NCBI chr16:14,632,951...14,669,236
Ensembl chr16:14,632,931...14,669,236
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CDKN2A
cyclin dependent kinase inhibitor 2A
involved_in
IDA
(PMID:18305112)
UniProt
PMID:18305112
NCBI chr 9:21,967,752...21,995,324
Ensembl chr 9:21,967,752...21,995,301
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HECTD1
HECT domain E3 ubiquitin protein ligase 1
involved_in acts_upstream_of_or_within
IBA ISO IEA
(PMID:22431752)
GO_Central MGI TreeGrafter
PMID:22431752
GO_REF:0000033 GO_REF:0000118
NCBI chr14:31,100,117...31,207,793
Ensembl chr14:31,100,117...31,207,804
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ITCH
itchy E3 ubiquitin protein ligase
involved_in
IBA IDA IEA
(PMID:18718448), (PMID:19592251), (PMID:29378950)
GO_Central UniProt TreeGrafter
PMID:18718448 PMID:19592251 PMID:29378950
GO_REF:0000033 GO_REF:0000118
NCBI chr20:34,363,273...34,511,773
Ensembl chr20:34,363,235...34,511,773
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KCMF1
potassium channel modulatory factor 1
involved_in
IDA
(PMID:34893540)
UniProt
PMID:34893540
NCBI chr 2:84,971,161...85,059,472
Ensembl chr 2:84,971,093...85,059,472
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LOC122513141
ring finger protein-like
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 9:137,217,494...137,219,361
Ensembl chr 9:137,217,452...137,219,361
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MAGEL2
MAGE family member L2
involved_in
IMP
(PMID:23452853)
UniProt
PMID:23452853
NCBI chr15:23,643,549...23,647,867
Ensembl chr15:23,643,549...23,647,867
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NBN
nibrin
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr 8:89,933,331...89,984,667
Ensembl chr 8:89,924,515...90,003,228
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NEDD4
NEDD4 E3 ubiquitin protein ligase
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr15:55,826,917...55,993,612
Ensembl chr15:55,826,922...55,993,660
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PEDS1-UBE2V1
PEDS1-UBE2V1 readthrough
involved_in
IDA IBA
(PMID:16307917), (PMID:21512573), (PMID:31006531)
UniProt GO_Central
PMID:16307917 PMID:21512573 PMID:31006531
GO_REF:0000033
NCBI chr20:50,081,124...50,153,723
Ensembl chr20:50,081,124...50,153,637
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PELI1
pellino E3 ubiquitin protein ligase 1
involved_in
IMP IDA
(PMID:29883609) (PMID:30952868), (PMID:33215753)
UniProt
PMID:29883609 PMID:30952868 PMID:33215753
NCBI chr 2:64,092,652...64,144,420
Ensembl chr 2:64,092,652...64,144,420
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PELI3
pellino E3 ubiquitin protein ligase family member 3
involved_in acts_upstream_of_or_within
IBA ISO IEA
(PMID:23892723)
GO_Central MGI TreeGrafter
PMID:23892723
GO_REF:0000033 GO_REF:0000118
NCBI chr11:66,466,327...66,477,337
Ensembl chr11:66,466,327...66,477,337
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PNKP
polynucleotide kinase 3'-phosphatase
involved_in
ISO
(MGI:5780352|PMID:26774286)
UniProt
PMID:26774286
MGI:5780352
NCBI chr19:49,861,204...49,867,576
Ensembl chr19:49,859,882...49,878,351
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PRKN
parkin RBR E3 ubiquitin protein ligase
involved_in
IDA NAS TAS
(PMID:15728840), (PMID:17314283), (PMID:19880420), (PMID:25621951) (PMID:20890124) (PMID:18221368)
UniProt ParkinsonsUK-UCL
PMID:15728840 PMID:17314283 PMID:18221368 PMID:19880420 PMID:20890124 PMID:25621951 More...
NCBI chr 6:161,347,417...162,727,766
Ensembl chr 6:161,347,417...162,727,775
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PRPF19
pre-mRNA processing factor 19
involved_in
IMP IEA
(PMID:20595234), (PMID:24332808)
UniProt
PMID:20595234 PMID:24332808
GO_REF:0000104
NCBI chr11:60,890,547...60,906,585
Ensembl chr11:60,890,547...60,906,585
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RNF115
ring finger protein 115
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:145,738,868...145,824,095
Ensembl chr 1:145,738,868...145,824,095
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RNF126
ring finger protein 126
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr19:647,526...663,214
Ensembl chr19:647,526...663,233
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RNF135
ring finger protein 135
involved_in
IDA
(PMID:31006531)
UniProt
PMID:31006531
NCBI chr17:30,958,921...30,999,911
Ensembl chr17:30,970,984...30,999,911
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RNF152
ring finger protein 152
involved_in
IMP
(PMID:25936802)
UniProt
PMID:25936802
NCBI chr18:61,808,067...61,894,412
Ensembl chr18:61,808,067...61,894,247
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RNF167
ring finger protein 167
involved_in
IDA
(PMID:35114100)
UniProt
PMID:35114100
NCBI chr17:4,940,092...4,945,222
Ensembl chr17:4,940,008...4,945,222
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RNF168
ring finger protein 168
involved_in
IDA
(PMID:22266820)
UniProt
PMID:22266820
NCBI chr 3:196,468,783...196,503,768
Ensembl chr 3:196,468,783...196,503,768
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RNF186
ring finger protein 186
involved_in
IDA IBA
(PMID:23896122)
UniProt GO_Central
PMID:23896122
GO_REF:0000033
NCBI chr 1:19,814,029...19,815,283
Ensembl chr 1:19,814,029...19,815,283
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RNF213
ring finger protein 213
involved_in
IDA
(PMID:32139119), (PMID:33842849)
UniProt
PMID:32139119 PMID:33842849
NCBI chr17:80,260,852...80,398,794
Ensembl chr17:80,260,852...80,398,794
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RNF4
ring finger protein 4
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr 4:2,469,106...2,515,857
Ensembl chr 4:2,462,220...2,515,857
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RNF5
ring finger protein 5
involved_in
IDA
(PMID:19269966)
UniProt
PMID:19269966
NCBI chr 6:32,178,405...32,180,793
Ensembl chr 6:32,178,405...32,180,793
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RNF8
ring finger protein 8
involved_in
IDA
(PMID:21911360)
UniProt
PMID:21911360
NCBI chr 6:37,353,983...37,394,734
Ensembl chr 6:37,353,979...37,394,734
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SKP2
S-phase kinase associated protein 2
involved_in
IDA IEA
(PMID:22464731)
UniProt Ensembl
PMID:22464731
GO_REF:0000107
NCBI chr 5:36,152,111...36,193,530
Ensembl chr 5:36,151,989...36,196,849
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STUB1
STIP1 homology and U-box containing protein 1
involved_in
IDA
(PMID:16307917)
UniProt
PMID:16307917
NCBI chr16:680,410...682,801
Ensembl chr16:680,224...682,870
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TRAF1
TNF receptor associated factor 1
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 9:120,902,393...120,929,171
Ensembl chr 9:120,902,393...120,929,173
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TRAF2
TNF receptor associated factor 2
involved_in
IDA IEA IBA
(PMID:15258597), (PMID:20577214)
UniProt TreeGrafter GO_Central
PMID:15258597 PMID:20577214
GO_REF:0000033 GO_REF:0000118
NCBI chr 9:136,881,958...136,926,607
Ensembl chr 9:136,881,912...136,926,607
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TRAF3
TNF receptor associated factor 3
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr14:102,777,449...102,911,500
Ensembl chr14:102,777,449...102,911,500
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TRAF3IP2
TRAF3 interacting protein 2
involved_in
IDA
(PMID:19825828)
UniProt
PMID:19825828
NCBI chr 6:111,555,381...111,605,878
Ensembl chr 6:111,555,381...111,606,906
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TRAF4
TNF receptor associated factor 4
involved_in
IEA
TreeGrafter
GO_REF:0000118
NCBI chr17:28,744,011...28,750,956
Ensembl chr17:28,744,011...28,750,956
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TRAF5
TNF receptor associated factor 5
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 1:211,326,635...211,374,946
Ensembl chr 1:211,326,615...211,374,946
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TRAF6
TNF receptor associated factor 6
involved_in
IGI IBA IDA IEA
(PMID:17135271), (PMID:19675569) (PMID:19713527), (PMID:20038579), (PMID:21068390), (PMID:23015697), (PMID:23524951), (PMID:33799071)
UniProt GO_Central ParkinsonsUK-UCL Ensembl
PMID:17135271 PMID:19675569 PMID:19713527 PMID:20038579 PMID:21068390 PMID:23015697 PMID:23524951 PMID:33799071 More...
GO_REF:0000033 GO_REF:0000107
NCBI chr11:36,483,769...36,510,272
Ensembl chr11:36,483,769...36,510,272
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TRIM21
tripartite motif containing 21
involved_in
IMP IDA
(PMID:26342464) (PMID:36692217), (PMID:37816088)
UniProt
PMID:26342464 PMID:36692217 PMID:37816088
NCBI chr11:4,384,897...4,393,702
Ensembl chr11:4,384,897...4,393,702
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TRIM22
tripartite motif containing 22
involved_in
IDA
(PMID:36159777)
UniProt
PMID:36159777
NCBI chr11:5,689,790...5,710,863
Ensembl chr11:5,689,610...5,737,089
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TRIM27
tripartite motif containing 27
involved_in
IMP IEA IBA
(PMID:23452853)
UniProt TreeGrafter GO_Central
PMID:23452853
GO_REF:0000033 GO_REF:0000118
NCBI chr 6:28,903,002...28,923,985
Ensembl chr 6:28,903,002...28,923,988
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TRIM3
tripartite motif containing 3
involved_in
IDA
(PMID:32878999)
UniProt
PMID:32878999
NCBI chr11:6,448,613...6,474,459
Ensembl chr11:6,448,613...6,474,459
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TRIM31
tripartite motif containing 31
involved_in
IDA
(PMID:27992402)
UniProt
PMID:27992402
NCBI chr 6:30,102,897...30,113,090
Ensembl chr 6:30,102,897...30,113,090
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TRIM32
tripartite motif containing 32
involved_in
IDA
(PMID:37943659)
UniProt
PMID:37943659
NCBI chr 9:116,687,305...116,701,299
Ensembl chr 9:116,687,305...116,701,300
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TRIM5
tripartite motif containing 5
involved_in
IDA
(PMID:21512573)
UniProt
PMID:21512573
NCBI chr11:5,588,635...5,685,074
Ensembl chr11:5,663,195...5,938,619
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TRIM56
tripartite motif containing 56
involved_in
ISS
UniProt
GO_REF:0000024
NCBI chr 7:101,085,481...101,097,967
Ensembl chr 7:101,085,481...101,097,967
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TRIM65
tripartite motif containing 65
involved_in
IDA IEA
(PMID:28594402)
UniProt Ensembl
PMID:28594402
GO_REF:0000107
NCBI chr17:75,879,537...75,896,951
Ensembl chr17:75,880,335...75,896,951
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TRIM8
tripartite motif containing 8
involved_in
IDA
(PMID:27995356)
UniProt
PMID:27995356
NCBI chr10:102,644,479...102,658,319
Ensembl chr10:102,642,503...102,658,318
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UBE2B
ubiquitin conjugating enzyme E2 B
involved_in
IDA
(PMID:20061386)
UniProt
PMID:20061386
NCBI chr 5:134,371,569...134,392,108
Ensembl chr 5:134,371,184...134,392,108
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UBE2D4
ubiquitin conjugating enzyme E2 D4 (putative)
involved_in
IDA IBA IEA
(PMID:20061386)
UniProt GO_Central TreeGrafter
PMID:20061386
GO_REF:0000033 GO_REF:0000118
NCBI chr 7:43,926,436...43,956,136
Ensembl chr 7:43,926,436...43,956,136
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UBE2E2
ubiquitin conjugating enzyme E2 E2
involved_in
IDA IBA
(PMID:20061386)
UniProt GO_Central
PMID:20061386
GO_REF:0000033
NCBI chr 3:23,203,098...23,591,925
Ensembl chr 3:23,203,020...23,591,794
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UBE2E3
ubiquitin conjugating enzyme E2 E3
involved_in
IDA IBA
(PMID:20061386)
UniProt GO_Central
PMID:20061386
GO_REF:0000033
NCBI chr 2:180,980,360...181,063,425
Ensembl chr 2:180,967,248...181,076,585
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UBE2G1
ubiquitin conjugating enzyme E2 G1
involved_in
IDA
(PMID:20061386)
UniProt
PMID:20061386
NCBI chr17:4,269,259...4,366,675
Ensembl chr17:4,269,259...4,366,675
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UBE2N
ubiquitin conjugating enzyme E2 N
involved_in
IDA IBA IEA IMP
(PMID:16307917), (PMID:20061386), (PMID:21512573), (PMID:31006531) (PMID:25936802)
UniProt GO_Central Ensembl TreeGrafter
PMID:16307917 PMID:20061386 PMID:21512573 PMID:25936802 PMID:31006531
GO_REF:0000033 GO_REF:0000107 GO_REF:0000118
NCBI chr12:93,405,684...93,441,947
Ensembl chr12:93,405,673...93,441,947
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UBE2NL
ubiquitin conjugating enzyme E2 N like (gene/pseudogene)
NOT|involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr X:143,884,071...143,885,255
Ensembl chr X:143,884,071...143,885,255
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UBE2O
ubiquitin conjugating enzyme E2 O
involved_in
IMP
(PMID:23452853)
UniProt
PMID:23452853
NCBI chr17:76,389,456...76,453,152
Ensembl chr17:76,389,456...76,453,152
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UBE2S
ubiquitin conjugating enzyme E2 S
involved_in
IDA
(PMID:20061386)
UniProt
PMID:20061386
NCBI chr19:55,399,745...55,407,788
Ensembl chr19:55,399,745...55,407,788
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UBE2T
ubiquitin conjugating enzyme E2 T
involved_in
IDA
(PMID:20061386)
UniProt
PMID:20061386
NCBI chr 1:202,331,657...202,341,936
Ensembl chr 1:202,331,544...202,341,984
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UBE2V1
ubiquitin conjugating enzyme E2 V1
involved_in
IDA IBA
(PMID:16307917), (PMID:21512573), (PMID:31006531)
UniProt GO_Central
PMID:16307917 PMID:21512573 PMID:31006531
GO_REF:0000033
NCBI chr20:50,081,124...50,115,957
Ensembl chr20:50,081,124...50,115,959
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UBE2V2
ubiquitin conjugating enzyme E2 V2
involved_in
IEA IBA
TreeGrafter GO_Central
GO_REF:0000033 GO_REF:0000118
NCBI chr 8:47,997,437...48,064,708
Ensembl chr 8:48,008,415...48,064,708
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UBR2
ubiquitin protein ligase E3 component n-recognin 2
involved_in
IDA
(PMID:38225265)
UniProt
PMID:38225265
NCBI chr 6:42,564,029...42,693,505
Ensembl chr 6:42,564,029...42,693,505
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WWP2
WW domain containing E3 ubiquitin protein ligase 2
involved_in
ISS IEA IBA
UniProt TreeGrafter GO_Central Ensembl
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118
NCBI chr16:69,762,332...69,941,739
Ensembl chr16:69,762,328...69,941,741
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XIAP
X-linked inhibitor of apoptosis
involved_in
IDA
(PMID:29452636)
UniProt
PMID:29452636
NCBI chr X:123,859,708...123,913,972
Ensembl chr X:123,859,712...123,913,972
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ZFP91
ZFP91 zinc finger protein, atypical E3 ubiquitin ligase
involved_in
IDA
(PMID:20682767)
UniProt
PMID:20682767
NCBI chr11:58,579,063...58,621,550
Ensembl chr11:58,579,063...58,621,550
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ZNF598
zinc finger protein 598, E3 ubiquitin ligase
involved_in
IDA
(PMID:36302773)
UniProt
PMID:36302773
NCBI chr16:1,997,654...2,009,821
Ensembl chr16:1,997,654...2,009,821
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CEP63
centrosomal protein 63
involved_in
IDA
(PMID:35989368)
UniProt
PMID:35989368
NCBI chr 3:134,485,724...134,782,559
Ensembl chr 3:134,485,699...134,587,789
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GPS2
G protein pathway suppressor 2
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr17:7,312,661...7,315,360
Ensembl chr17:7,311,324...7,315,564
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MIR138-1
microRNA 138-1
involved_in
IMP
(PMID:23319823)
ARUK-UCL
PMID:23319823
NCBI chr 3:44,114,212...44,114,310
Ensembl chr 3:44,114,212...44,114,310
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MIR138-2
microRNA 138-2
involved_in
IMP
(PMID:23319823)
ARUK-UCL
PMID:23319823
NCBI chr16:56,858,518...56,858,601
Ensembl chr16:56,858,518...56,858,601
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PARP10
poly(ADP-ribose) polymerase family member 10
involved_in
IMP
(PMID:23575687)
UniProt
PMID:23575687
NCBI chr 8:143,977,158...144,012,764
Ensembl chr 8:143,977,153...144,012,772
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PLAA
phospholipase A2 activating protein
involved_in
ISS IEA
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr 9:26,903,372...26,947,242
Ensembl chr 9:26,903,372...26,947,242
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BIRC2
baculoviral IAP repeat containing 2
involved_in
IDA
(PMID:21931591)
UniProt
PMID:21931591
NCBI chr11:102,347,214...102,378,670
Ensembl chr11:102,347,211...102,378,670
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DDX3X
DEAD-box helicase 3 X-linked
involved_in
IDA
(PMID:27980081)
UniProt
PMID:27980081
NCBI chr X:41,333,308...41,364,472
Ensembl chr X:41,333,348...41,364,472
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NOD2
nucleotide binding oligomerization domain containing 2
involved_in
IMP
(PMID:25891078)
UniProt
PMID:25891078
NCBI chr16:50,693,606...50,733,075
Ensembl chr16:50,693,588...50,733,077
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PEDS1-UBE2V1
PEDS1-UBE2V1 readthrough
involved_in
IDA
(PMID:11057907)
ComplexPortal
PMID:11057907
NCBI chr20:50,081,124...50,153,723
Ensembl chr20:50,081,124...50,153,637
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PTPN22
protein tyrosine phosphatase non-receptor type 22
involved_in
IMP IEA
(PMID:23871208)
UniProt TreeGrafter Ensembl
PMID:23871208
GO_REF:0000107 GO_REF:0000118
NCBI chr 1:113,813,811...113,871,759
Ensembl chr 1:113,813,811...113,871,753
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RIPK2
receptor interacting serine/threonine kinase 2
involved_in
IDA
(PMID:17562858)
UniProt
PMID:17562858
NCBI chr 8:89,757,816...89,791,064
Ensembl chr 8:89,757,806...89,791,064
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UBE2N
ubiquitin conjugating enzyme E2 N
involved_in
IDA
(PMID:10089880), (PMID:11057907)
ComplexPortal
PMID:10089880 PMID:11057907
NCBI chr12:93,405,684...93,441,947
Ensembl chr12:93,405,673...93,441,947
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UBE2V1
ubiquitin conjugating enzyme E2 V1
involved_in
IDA
(PMID:11057907)
ComplexPortal
PMID:11057907
NCBI chr20:50,081,124...50,115,957
Ensembl chr20:50,081,124...50,115,959
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UBE2V2
ubiquitin conjugating enzyme E2 V2
involved_in
IDA
(PMID:10089880)
ComplexPortal
PMID:10089880
NCBI chr 8:47,997,437...48,064,708
Ensembl chr 8:48,008,415...48,064,708
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SASH1
SAM and SH3 domain containing 1
acts_upstream_of_or_within
IDA
(PMID:23776175)
MGI
PMID:23776175
NCBI chr 6:148,193,468...148,552,044
Ensembl chr 6:148,272,304...148,552,044
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