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Gene: Lnc134 (long non-coding RNA 134) Rattus norvegicus

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Symbol:

Lnc134

Name:

long non-coding RNA 134

RGD ID:

9078385

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

lncSN134; LOC103691906; long non-coding RNA SN134; uncharacterized LOC103691906

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	48,446,967 - 48,451,885 (-)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	13	45,894,964 - 45,899,883 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	45,894,662 - 45,899,902 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	48,502,165 - 48,507,086 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	49,790,233 - 49,795,154 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	47,054,545 - 47,059,468 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	13	47,825,449 - 47,830,370 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	13	48,056,732 - 48,061,649 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	13	48,023,180 - 48,028,101 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	13	47,980,595 - 47,985,512 (-)	NCBI		F344_StmMcwi
Rnor_6.0	13	51,275,947 - 51,280,865 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Celera	13	46,222,770 - 46,227,688 (-)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:8889548	PMID:22864914

Genomics

Variants

Variants in Lnc134
73 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	11866254	56866254	Rat
6893344	Cm79	Cardiac mass QTL 79	1.5	0.04	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	46272922	51216694	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	24853925	69853925	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	17468282	62468282	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	12384320	57384320	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	24335432	55601132	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	12448421	48744906	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
4145117	Mcs27	Mammary carcinoma susceptibility QTL 27		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	13	45990077	50392939	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	26244808	71244808	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	33794096	78794096	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	33794096	60914504	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	26244808	71244808	Rat
12879472	Bp399	Blood pressure QTL 399			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	47780418	50392939	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	17711336	62711336	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	11866254	56866254	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	hemolymphoid system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	sensory system	visual system
7	1	18	52	67	138	95	11	51	36	32	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_126577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_126578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC106215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ199769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR473679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM099976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000096483

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	45,894,733 - 45,899,902 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	45,894,733 - 45,899,902 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109219

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	45,894,662 - 45,899,902 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	45,894,996 - 45,898,190 (-)	Ensembl

RefSeq Acc Id:

NR_126577

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,446,967 - 48,451,885 (-)	NCBI
mRatBN7.2	13	45,894,964 - 45,899,883 (-)	NCBI
Dahl_SR_JrHsd	13	47,825,449 - 47,830,370 (-)	NCBI
Lyon_Normotensive	13	48,056,732 - 48,061,649 (-)	NCBI
Lyon_Hypertensive	13	48,023,180 - 48,028,101 (-)	NCBI
F344_StmMcwi	13	47,980,595 - 47,985,512 (-)	NCBI
Rnor_6.0	13	51,275,947 - 51,280,865 (-)	NCBI
Celera	13	46,222,770 - 46,227,688 (-)	NCBI

Sequence:

show sequence

GTCACGTTAGGAGGCAGAGCCGTGAAGTCCTGTGTACCTGAGAGCTCAGAAAAAGAGAGAAGAA
AATGTTTAGATGGGTGGAGTGGGGAGTGCCGCGCGCCGAGGCTGGCAGTCCCCACGCAGTATGG
CAGGCGGCAAGTGGTTTCCCGATAAACCGAAAAACACAACTTCTTCAAGAATTTCTTTGAGAGT
GTAACCCCACACTTGGGAGACTAAAGCAGGAAACAGCAAGTTCAAGGGGAGGCCCTGTCCCGAA
AACAGTAACAATTAAAGCTGAAAATGTAGCTGGCATGTGAAAGGCCCAAGACAGGGTGTTATAC
AGTATATGCTGGTCTTGAATTCACCATGTAACTGAGGATGACCCTAAACTTCTCATCTTTCTGC
GTTTACCTCCTCCGAAGTGCTGGAATTACAAGCATGTGCCACCAGGATCAGTTTATGCCAGTGC
AATGGATTAAATCCAGGACCCTGTGTTTCCTCTACTGAGCTATACCCACAGCCATGCATTTTCA
GTCAGGAAAAAAAAACAAAACAAAAACAGAATTCCAGAAATGATGCAGGTGTTTGAGAATGATG
GCGCCCTCCACTGGCCAACTTCATGACCCAGTGACCTGATTTGCTGGGCACTTACAGTCACAAG
AGATCAACCTGGGACAGTGCTCTAAGCTCACTGTCTAATGCCAATGAAGATTACTGGTGTCGTG
TCATGTGGAGGTAGAAGCAGGCTTTATTAAGAATTATTGCATAAGGTTGGAGTGGTGGCTCAGC
AAGAATTATACATAGGATTAGAGTAGTGGCTCAGAGGTTAAAAACATTGGCTGCCCTTCCAGAG
GTCCTGAGTTCAATTCTCAGAAATCACATGGTGGCTCAGAACCATCTATAATGAGATCTGATGC
CCTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACAAACATAAATTAAAATAAATAAATCTTT
AAAGATGA

hide sequence

RefSeq Acc Id:

NR_126578

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	48,446,967 - 48,451,885 (-)	NCBI
mRatBN7.2	13	45,894,964 - 45,899,883 (-)	NCBI
Dahl_SR_JrHsd	13	47,825,449 - 47,830,370 (-)	NCBI
Lyon_Normotensive	13	48,056,732 - 48,061,649 (-)	NCBI
Lyon_Hypertensive	13	48,023,180 - 48,028,101 (-)	NCBI
F344_StmMcwi	13	47,980,595 - 47,985,512 (-)	NCBI
Rnor_6.0	13	51,275,947 - 51,280,865 (-)	NCBI
Celera	13	46,222,770 - 46,227,688 (-)	NCBI

Sequence:

show sequence

GTCACGTTAGGAGGCAGAGCCGTGAAGTCCTGTGTACCTGAGAGCTCAGAAAAAGAGAGAAGAA
AATGTTTAGATGGGTGGAGTGGGGAGTGCCGCGCGCCGAGGCTGGCAGTCCCCACGCAGTATGG
CAGGCGGGTGTTATACAGTATATGCTGGTCTTGAATTCACCATGTAACTGAGGATGACCCTAAA
CTTCTCATCTTTCTGCGTTTACCTCCTCCGAAGTGCTGGAATTACAAGCATGTGCCACCAGGAT
CAGTTTATGCCAGTGCAATGGATTAAATCCAGGACCCTGTGTTTCCTCTACTGAGCTATACCCA
CAGCCATGCATTTTCAGTCAGGAAAAAAAAACAAAACAAAAACAGAATTCCAGAAATGATGCAG
GTGTTTGAGAATGATGGCGCCCTCCACTGGCCAACTTCATGACCCAGTGACCTGATTTGCTGGG
CACTTACAGTCACAAGAGATCAACCTGGGACAGTGCTCTAAGCTCACTGTCTAATGCCAATGAA
GATTACTGGTGTCGTGTCATGTGGAGGTAGAAGCAGGCTTTATTAAGAATTATTGCATAAGGTT
GGAGTGGTGGCTCAGCAAGAATTATACATAGGATTAGAGTAGTGGCTCAGAGGTTAAAAACATT
GGCTGCCCTTCCAGAGGTCCTGAGTTCAATTCTCAGAAATCACATGGTGGCTCAGAACCATCTA
TAATGAGATCTGATGCCCTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACAAACATAAATTA
AAATAAATAAATCTTTAAAGATGA

hide sequence

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-18231	BioCyc
Ensembl Genes	ENSRNOG00000068751	Ensembl
NCBI Gene	LOC103691906	ENTREZGENE
PhenoGen	Lnc134	PhenoGen
RatGTEx	ENSRNOG00000068751	RatGTEx
RNAcentral	URS00007E4539	RNACentral
	URS00007E4C82	RNACentral
	URS00022AEABA	RNACentral
	URS00022B49CC	RNACentral
	URS00022B8D33	RNACentral
	URS00022B9026	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	Lnc134	long non-coding RNA 134	Lnc134	long non-coding RNA 134	Data merged from RGD:149736385	737654	PROVISIONAL
2021-08-09	Lnc134	long non-coding RNA 134			Symbol and Name status set to provisional	45752	PROVISIONAL
2014-12-15	Lnc134	long non-coding RNA 134	lnc134	long non-coding RNA 134	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-12-15	lncSN134	long non-coding RNA SN134	LOC103691906	uncharacterized LOC103691906	Name and Symbol changed	629549	APPROVED
2014-12-15	lnc134	long non-coding RNA 134	lncSN134	long non-coding RNA SN134	Name and Symbol changed	629549	APPROVED
2014-08-25	LOC103691906	uncharacterized LOC103691906			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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