Snrpd2 (small nuclear ribonucleoprotein D2 polypeptide) - Rat Genome Database

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Gene: Snrpd2 (small nuclear ribonucleoprotein D2 polypeptide) Chinchilla lanigera
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Symbol: Snrpd2
Name: small nuclear ribonucleoprotein D2 polypeptide
RGD ID: 8912037
Description: ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH systemic lupus erythematosus (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein D2 polypeptide 16.5kDa; small nuclear ribonucleoprotein Sm D2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555611,083,057 - 1,083,413 (-)Ensembl
ChiLan1.0NW_004955574157,769 - 164,947 (-)NCBIChiLan1.0ChiLan1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snrpd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555611,083,057 - 1,083,413 (-)Ensembl
ChiLan1.0NW_004955574157,769 - 164,947 (-)NCBIChiLan1.0ChiLan1.0
SNRPD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381945,687,454 - 45,692,316 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1945,687,460 - 45,692,569 (-)Ensemblhg38GRCh38
GRCh371946,190,712 - 46,195,574 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361950,882,558 - 50,887,282 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341950,882,557 - 50,887,282NCBI
Celera1942,996,835 - 43,001,568 (-)NCBICelera
Cytogenetic Map19q13.32NCBI
HuRef1942,619,677 - 42,624,410 (-)NCBIHuRef
CHM1_11946,194,181 - 46,198,916 (-)NCBICHM1_1
T2T-CHM13v2.01948,514,991 - 48,519,856 (-)NCBIT2T-CHM13v2.0
Snrpd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39718,883,370 - 18,886,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl718,883,647 - 18,887,467 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38719,149,445 - 19,152,734 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl719,149,722 - 19,153,542 (+)Ensemblmm10GRCm38
MGSCv37719,735,187 - 19,738,075 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36718,308,360 - 18,311,248 (+)NCBIMGSCv36mm8
Celera716,561,189 - 16,564,077 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map79.46NCBI
Snrpd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8187,926,030 - 87,929,259 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl187,926,048 - 87,933,339 (+)EnsemblGRCr8
GRCr8 Ensembl2027,796,409 - 27,796,949 (-)EnsemblGRCr8
mRatBN7.2178,798,377 - 78,801,227 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl178,798,377 - 78,803,351 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl2027,253,424 - 27,253,780 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx184,187,409 - 84,190,259 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,745,052 - 92,747,904 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0185,942,511 - 85,945,361 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd186,546,357 - 86,549,207 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive191,683,368 - 91,686,218 (+)NCBILyon_Normotensive
Lyon_Hypertensive188,226,290 - 88,229,272 (+)NCBILyon_Hypertensive
F344_StmMcwi186,672,305 - 86,675,155 (+)NCBIF344_StmMcwi
Rnor_6.0180,057,140 - 80,059,990 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl180,056,755 - 80,059,996 (+)Ensemblrn6Rnor6.0
Rnor_5.0181,324,033 - 81,326,883 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4178,509,142 - 78,511,992 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera173,264,040 - 73,266,890 (+)NCBICelera
Cytogenetic Map1q21NCBI
SNRPD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22051,849,077 - 51,853,700 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11953,720,533 - 53,725,113 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01942,692,963 - 42,697,512 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11951,230,822 - 51,235,661 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1951,230,822 - 51,235,661 (-)EnsemblpanPan2panpan1.1
SNRPD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11109,891,253 - 109,896,712 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1109,891,223 - 109,896,711 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1109,376,402 - 109,381,860 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01110,424,516 - 110,429,978 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl134,259,831 - 4,260,778 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11110,100,067 - 110,105,533 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01109,734,707 - 109,740,174 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01110,603,576 - 110,609,034 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Snrpd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934917,717,972 - 17,721,426 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367062,065,419 - 2,067,487 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367062,065,315 - 2,068,709 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl652,035,134 - 52,042,474 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1652,035,900 - 52,042,474 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SNRPD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1639,127,974 - 39,134,771 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl639,127,877 - 39,134,626 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607318,755,632 - 18,760,350 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrpd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248327,488,674 - 7,495,306 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248327,488,259 - 7,495,305 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Snrpd2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12171,469,867 - 171,472,741 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000001265   ⟹   ENSCLAP00000001224
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955574157,769 - 164,947 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000001616   ⟹   ENSCLAP00000001573
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555611,083,057 - 1,083,413 (-)Ensembl
RefSeq Acc Id: XM_005413802   ⟹   XP_005413859
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955574157,769 - 164,947 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005413859 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001224
  ENSCLAP00000001224.1
  ENSCLAP00000001573.1
RefSeq Acc Id: XP_005413859   ⟸   XM_005413802
- UniProtKB: A0A8C2UP69 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000001224   ⟸   ENSCLAT00000001265
Ensembl Acc Id: ENSCLAP00000001573   ⟸   ENSCLAT00000001616
Protein Domains
Sm


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000931 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSCLAG00000001183 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001265 ENTREZGENE
  ENSCLAT00000001265.1 UniProtKB/TrEMBL
  ENSCLAT00000001616.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  Sm_D2 UniProtKB/TrEMBL
NCBI Gene Snrpd2 ENTREZGENE
PANTHER PTHR12777 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A8C2UJR5_CHILA UniProtKB/TrEMBL
  A0A8C2UP69 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Snrpd2  small nuclear ribonucleoprotein D2 polypeptide    small nuclear ribonucleoprotein D2 polypeptide 16.5kDa  Symbol and/or name change 5135510 APPROVED