Ppp6r3 (protein phosphatase 6 regulatory subunit 3) - Rat Genome Database

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Gene: Ppp6r3 (protein phosphatase 6 regulatory subunit 3) Chinchilla lanigera
Analyze
Symbol: Ppp6r3
Name: protein phosphatase 6 regulatory subunit 3
RGD ID: 8897662
Description: ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein phosphatase 6 regulatory subunit 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,247,076 - 17,387,990 (-)Ensembl
ChiLan1.0NW_00495542217,247,133 - 17,387,870 (-)NCBIChiLan1.0ChiLan1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ppp6r3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542217,247,076 - 17,387,990 (-)Ensembl
ChiLan1.0NW_00495542217,247,133 - 17,387,870 (-)NCBIChiLan1.0ChiLan1.0
PPP6R3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381168,460,752 - 68,615,334 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1168,460,475 - 68,615,343 (+)Ensemblhg38GRCh38
GRCh371168,228,220 - 68,382,802 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,984,775 - 68,139,378 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341167,984,774 - 68,139,375NCBI
Celera1165,563,446 - 65,717,507 (+)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1164,564,122 - 64,718,740 (+)NCBIHuRef
CHM1_11168,112,367 - 68,266,983 (+)NCBICHM1_1
T2T-CHM13v2.01168,465,656 - 68,620,220 (+)NCBIT2T-CHM13v2.0
Ppp6r3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,504,928 - 3,626,191 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl193,504,928 - 3,625,749 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38193,454,928 - 3,576,033 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,454,928 - 3,575,749 (-)Ensemblmm10GRCm38
MGSCv37193,454,928 - 3,575,749 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36193,454,928 - 3,575,720 (-)NCBIMGSCv36mm8
Celera193,324,815 - 3,445,584 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map193.21NCBI
Ppp6r3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,122,394 - 210,236,839 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1210,122,394 - 210,236,809 (-)EnsemblGRCr8
mRatBN7.21200,693,128 - 200,807,578 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1200,693,440 - 200,807,548 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1209,066,359 - 209,180,592 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01216,155,097 - 216,269,547 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01208,829,296 - 208,943,730 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1209,502,731 - 209,616,963 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1214,411,494 - 214,525,718 (-)NCBILyon_Normotensive
Lyon_Hypertensive1211,146,653 - 211,261,081 (-)NCBILyon_Hypertensive
F344_StmMcwi1209,433,153 - 209,547,714 (-)NCBIF344_StmMcwi
Rnor_6.01218,695,738 - 218,810,139 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1218,695,738 - 218,810,135 (-)Ensemblrn6Rnor6.0
Rnor_5.01225,564,223 - 225,682,653 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41205,980,403 - 206,096,001 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1198,248,497 - 198,363,101 (-)NCBICelera
RGSC_v3.11206,133,864 - 206,210,702 (-)NCBI
Cytogenetic Map1q42NCBI
PPP6R3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2969,414,553 - 69,568,611 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11170,457,696 - 70,611,773 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01163,545,513 - 63,699,434 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11166,851,708 - 67,004,292 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,925,634 - 67,004,292 (+)EnsemblpanPan2panpan1.1
PPP6R3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11849,287,571 - 49,432,503 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1849,289,044 - 49,385,656 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1847,897,043 - 48,041,969 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01850,202,787 - 50,348,427 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1850,203,267 - 50,348,413 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11849,423,370 - 49,568,307 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01848,997,141 - 49,142,266 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01849,790,345 - 49,935,306 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ppp6r3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049475,161,351 - 5,296,896 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365991,602,430 - 1,697,221 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365991,603,700 - 1,739,224 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP6R3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl24,394,675 - 4,523,411 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.124,394,670 - 4,523,421 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.222,974,932 - 3,039,309 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP6R3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.115,920,097 - 6,073,847 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl15,919,226 - 6,074,037 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666038103,200,889 - 103,357,527 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp6r3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476718,271,877 - 18,369,613 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476718,269,737 - 18,431,406 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ppp6r3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v124,095,924 - 4,208,392 (+)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005384268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005384269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005384270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005384271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005384272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005384273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005384275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005384276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005384277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013514098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013514100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013514101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01022917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01022918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01022919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01022920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01022921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBCE01096047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCLAT00000022826   ⟹   ENSCLAP00000022618
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542217,247,076 - 17,387,990 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000022827   ⟹   ENSCLAP00000022619
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542217,247,076 - 17,387,990 (-)Ensembl
RefSeq Acc Id: XM_005384268   ⟹   XP_005384325
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,249,337 - 17,387,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384269   ⟹   XP_005384326
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,249,337 - 17,387,870 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384270   ⟹   XP_005384327
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,249,337 - 17,387,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384271   ⟹   XP_005384328
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,249,337 - 17,387,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384272   ⟹   XP_005384329
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,247,133 - 17,387,867 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384273   ⟹   XP_005384330
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,249,337 - 17,387,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384275   ⟹   XP_005384332
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,247,133 - 17,387,867 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384276   ⟹   XP_005384333
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,247,133 - 17,387,868 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005384277   ⟹   XP_005384334
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,247,133 - 17,387,867 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514098   ⟹   XP_013369552
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,249,337 - 17,387,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514100   ⟹   XP_013369554
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,249,337 - 17,387,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013514101   ⟹   XP_013369555
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542217,247,133 - 17,387,868 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005384334   ⟸   XM_005384277
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_005384332   ⟸   XM_005384275
- Peptide Label: isoform X9
- UniProtKB: A0A8C2W3C3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005384333   ⟸   XM_005384276
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_005384329   ⟸   XM_005384272
- Peptide Label: isoform X6
- UniProtKB: A0A8C2W0X2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005384326   ⟸   XM_005384269
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005384330   ⟸   XM_005384273
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005384328   ⟸   XM_005384271
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005384327   ⟸   XM_005384270
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005384325   ⟸   XM_005384268
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013369555   ⟸   XM_013514101
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_013369554   ⟸   XM_013514100
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013369552   ⟸   XM_013514098
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCLAP00000022619   ⟸   ENSCLAT00000022827
Ensembl Acc Id: ENSCLAP00000022618   ⟸   ENSCLAT00000022826


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015508 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022826 ENTREZGENE
  ENSCLAT00000022826.1 UniProtKB/TrEMBL
  ENSCLAT00000022827 ENTREZGENE
  ENSCLAT00000022827.1 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  SAPS UniProtKB/TrEMBL
NCBI Gene Ppp6r3 ENTREZGENE
PANTHER PTHR12634 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 6 REGULATORY SUBUNIT 3 UniProtKB/TrEMBL
Pfam SAPS UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2W0X2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2W3C3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Ppp6r3  protein phosphatase 6 regulatory subunit 3    protein phosphatase 6, regulatory subunit 3  Symbol and/or name change 5135510 APPROVED