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Gene: Narf (nuclear prelamin A recognition factor) Chinchilla lanigera

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Symbol:

Narf

Name:

nuclear prelamin A recognition factor

RGD ID:

8840593

Description:

ENCODES a protein that exhibits lamin binding (ortholog); FOUND IN lamin filament (ortholog); nuclear lumen (ortholog); nucleolus (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	636,533 - 657,561 (-)	Ensembl
ChiLan1.0	NW_004955506	636,533 - 657,561 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

lamin filament (ISO)

nuclear lumen (ISO)

nucleolus (ISO)

nucleoplasm (ISO)

Molecular Function

lamin binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Narf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	636,533 - 657,561 (-)	Ensembl
ChiLan1.0	NW_004955506	636,533 - 657,561 (-)	NCBI	ChiLan1.0	ChiLan1.0

NARF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	82,458,198 - 82,490,537 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	82,458,180 - 82,490,537 (+)	Ensembl			hg38	GRCh38
GRCh37	17	80,416,074 - 80,448,413 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	78,009,349 - 78,039,432 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	17	77,007,484 - 77,037,920 (+)	NCBI		Celera
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	75,814,115 - 75,844,050 (+)	NCBI		HuRef
CHM1_1	17	80,502,109 - 80,532,338 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	83,327,121 - 83,359,460 (+)	NCBI		T2T-CHM13v2.0

Narf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	121,128,062 - 121,146,682 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	121,128,079 - 121,146,682 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	121,237,236 - 121,255,856 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	121,237,253 - 121,255,856 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	121,098,550 - 121,117,170 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	121,053,343 - 121,071,945 (+)	NCBI		MGSCv36	mm8
Celera	11	132,975,471 - 132,994,092 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	85.12	NCBI

Narf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	107,017,344 - 107,035,777 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	107,016,510 - 107,037,283 (+)	Ensembl				GRCr8
mRatBN7.2	10	106,519,508 - 106,537,494 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	106,519,444 - 106,537,486 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	111,621,783 - 111,639,594 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	111,084,836 - 111,102,648 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	106,439,981 - 106,457,913 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	10	110,166,386 - 110,184,234 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	10	110,894,508 - 110,912,356 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	10	112,336,322 - 112,354,170 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	10	112,457,207 - 112,475,006 (+)	NCBI		F344_StmMcwi
Rnor_6.0	10	110,445,765 - 110,463,735 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	110,445,797 - 110,463,727 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	110,032,434 - 110,050,386 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	110,476,230 - 110,494,161 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	105,057,775 - 105,074,134 (+)	NCBI		Celera
RGSC_v3.1	10	110,490,719 - 110,507,093 (+)	NCBI
Cytogenetic Map	10	q32.3	NCBI

NARF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	98,997,331 - 99,026,182 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	103,900,137 - 103,932,396 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	76,868,782 - 76,897,561 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	82,674,127 - 82,703,116 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	82,674,127 - 82,703,116 (+)	Ensembl			panPan2	panpan1.1

NARF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	9	514,404 - 532,863 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	505,739 - 524,194 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	505,739 - 524,171 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	500,279 - 518,730 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	661,706 - 680,157 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	736,237 - 754,974 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Narf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	467,317 - 487,865 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936923	82,228 - 102,311 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936923	82,257 - 102,769 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NARF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	632,363 - 651,817 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	632,353 - 651,824 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	86,009 - 105,359 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NARF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	74,374,080 - 74,401,018 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	74,374,015 - 74,403,453 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	46,010,642 - 46,040,095 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Narf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	11,220,128 - 11,240,760 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624801	11,220,065 - 11,241,703 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Narf
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	62,764,149 - 62,781,851 (-)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005407190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005407191	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005407192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01065234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCB01025477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000006714 ⟹ ENSCLAP00000006604

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955506	636,533 - 657,561 (-)	Ensembl

RefSeq Acc Id:

XM_005407190 ⟹ XP_005407247

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955506	636,533 - 656,809 (-)	NCBI

Sequence:

show sequence

TGCGTCGTACGGTAAATGTCCCTGTGTCTGAGGAAGTCGCACGCTAGCCTGGTGGGGGAAGGCC
ACACCACTTGGAGTTCATCCTTACCGCAAATGGAATGTAGTAAAAAGACAAAAACCGAGGATGA
AGAGGATGTGTCAGTTGATGCACCGAGTCTGGCCCAGGAGAATGGTGAGAAGGGAGTATTCCAT
AAATTGGCTGATGCCAAGATACTGTTGAGTGACTGCCTAGCATGTGACAGCTGCGTGACTGCAG
AGGAAGGAGCCCAGCTTTGTCAGCAGAATGCCAAGGACTTCTTCCGGGTCCTGAACTTTAATAA
GAAATGCGATACCTCAAAGCACAAAGTGCTAGTTGTGTCTGTATGTCCCCAGTCTTTGCCTTAT
TTTGCTGCTAAATTGAACCTCAGTGTCACTGATGCATCCAGACGGCTGTGTGGCTTCCTGAAGA
GTCTTGGGGTGCACTATGTGTTTGACATGACGATAGCTACGGATTTCAGCATCCTGGAGAGTCA
GAAAGAATTTGTGCATCGATACCATCAGCACAGTGACGAGCAGCGCGTGCTGCCCATGCTGACG
TCTGCCTGCCCTGGCTGGGTCCGATATGCTGAGCGGGTGCTGGGCCGCCCCGTCACCCCCCACC
TGTGCACCACCAAGTCCCCACAGCAGGTCATGGGCTCCTTAGTGAAGGATTACTTCGCCAAACG
GCAGAACCTTCCTCCAGAGAAAATTTTCCATGTTGTTGTGGCCCCTTGCTATGACAGAAAGCTG
GAGGCTCTTCAGGAGGGATTCTCCACTGCTTTGCCTGGTGCCCGGGGTACTGATTGTGTGTTGA
CGTCAGGTGAGATCGCTCAGATAATGGAGCAGAGTGGACTCTCAGTGAAGGACGCTGCTGTGGA
CACTTTGGTTGGAGATGTGAAGGATGTAGCTGTGAGGCGCCAAGATGGAGCTGGCTCAGATGGG
CACCTGGCACACGTCTTCCGACACGCAGCAAAGGAGCTGTTCAATGAGCACGTGGAGGAGATCA
CCTACTGCTCTCTGAGAAACAAAGACTTCCAGGAGGTCACCCTTGAAAAGAATGGAGAGGTTCT
ATTGCGTTTTGCTGCTGCGTATGGGTTTCGGAATGTCCAGAACTTGGTCCTGAAGCTCAGGAAG
GGCAAGTTCCCATACCACTTTGTGGAGGTCCTTGCATGTCCTGGAGGATGCTTAAATGGCAGGG
GCCAAGCACAGACCAAGGACGGACACATGGACAAGTCCCTGCTGCGCCAGATGGAGGGCATCTA
CGCAGACATCCCTGTGCAGCCTCCTGAGTCCAGTGCACACGTGCAGGAGTTGTACCAGGAGTGG
CTGGAGGGCACTGACTCCCTCAGAGCCCGGGAGACCCTGCACACCACCTTCCAGAGCCCGGAGC
GCTGCACCACCAGCCTGGACATGAAGTGGTGAAGGAAGTCGGGCAGCAGGGCCAGCTGTGAAGT
AGGAGAGGACTGTGCTGATGAAGAGTTCGCCCTTCAAGGAAACACCAGTGGGCTGCTCTAGTTC
TCAGTGCTCTGTTCCCAACGTGCAGCAGCGTGCAGTGCTGTCTTCATCGTGAGTGTGTGGAGTG
GAGTGTTCATCATGGGAGAACCTCCCCAGTCTAAGTGTCCCTTTATTGTAAGATTGTGAGAAAA
ATCCCAAAGAGCGAGAACAGAGAAAGACGACTGTCTTCTAGATTTGAAAAATTTAAAGTGTCCT
GTGAGGAGCTGAGGCACTGGGGTGACCACTCTGACACTGCAGATGAGAAACGGCCGCAGCGCTG
TGCTGTGGTGCCGGTGACACTGCCGGCCTCTGGGTCATCAGAGTAGGTTGTACTTATTCCCGCT
TCCTGGCCCAGGGTGGTTCTCATTTTTACTTGTACACAGTTTTGAGAATCATTGTAAGTTGGCA
ACACTGCTGGTCCCAGCACAGCCCTCCTTGTGCTCCTGATGGCCCCACCTTGGCCCACTGCCCT
GCATTGTGAGCTCACCTTGAAAGGAAGCAGCGTATCCAACAAAACTGGCTGCTGGAGACAGACC
CACACGTCCTCTGCTGCACTGGGATTGGGTTCATCCTGGGGTACAAGCACCTGCAGGGGCTGTG
GGGTGCTTGGGTCTGTTGATGTGTGATGGCCTCAGCATGTTGGGTCGCCTTCGTCCTCTGTTGT
GTACCTGTTTGGGTGTAATTGGACATGTGTTAAATTGCATTTTTTGTTTTTGTTTTGTTTCCTT
CCCCTTCAGTCTGTATATAGTTGGGTGTTAATCCCCCAAACTGATATGAAATAAACTGTTGAAG
AGAGAGGA

hide sequence

RefSeq Acc Id:

XM_005407191 ⟹ XP_005407248

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955506	636,533 - 657,561 (-)	NCBI

Sequence:

show sequence

GCCTTTGGGGTGGGGCCGCTCCGGAGCGAAGACAACAAAGGCGGCGGGCGGCGGGCAGCTGTGT
GCGTGTCTCTTGGTTCTCCCATCCGCCGAGGCGTTCTTGCCTCCCTCCCGCCCTGCTCCAGATG
AAGTGTGAACACTGCACGCGGAAGGAATGTAGTAAAAAGACAAAAACCGAGGATGAAGAGGATG
TGTCAGTTGATGCACCGAGTCTGGCCCAGGAGAATGGTGAGAAGGGAGTATTCCATAAATTGGC
TGATGCCAAGATACTGTTGAGTGACTGCCTAGCATGTGACAGCTGCGTGACTGCAGAGGAAGGA
GCCCAGCTTTGTCAGCAGAATGCCAAGGACTTCTTCCGGGTCCTGAACTTTAATAAGAAATGCG
ATACCTCAAAGCACAAAGTGCTAGTTGTGTCTGTATGTCCCCAGTCTTTGCCTTATTTTGCTGC
TAAATTGAACCTCAGTGTCACTGATGCATCCAGACGGCTGTGTGGCTTCCTGAAGAGTCTTGGG
GTGCACTATGTGTTTGACATGACGATAGCTACGGATTTCAGCATCCTGGAGAGTCAGAAAGAAT
TTGTGCATCGATACCATCAGCACAGTGACGAGCAGCGCGTGCTGCCCATGCTGACGTCTGCCTG
CCCTGGCTGGGTCCGATATGCTGAGCGGGTGCTGGGCCGCCCCGTCACCCCCCACCTGTGCACC
ACCAAGTCCCCACAGCAGGTCATGGGCTCCTTAGTGAAGGATTACTTCGCCAAACGGCAGAACC
TTCCTCCAGAGAAAATTTTCCATGTTGTTGTGGCCCCTTGCTATGACAGAAAGCTGGAGGCTCT
TCAGGAGGGATTCTCCACTGCTTTGCCTGGTGCCCGGGGTACTGATTGTGTGTTGACGTCAGGT
GAGATCGCTCAGATAATGGAGCAGAGTGGACTCTCAGTGAAGGACGCTGCTGTGGACACTTTGG
TTGGAGATGTGAAGGATGTAGCTGTGAGGCGCCAAGATGGAGCTGGCTCAGATGGGCACCTGGC
ACACGTCTTCCGACACGCAGCAAAGGAGCTGTTCAATGAGCACGTGGAGGAGATCACCTACTGC
TCTCTGAGAAACAAAGACTTCCAGGAGGTCACCCTTGAAAAGAATGGAGAGGTTCTATTGCGTT
TTGCTGCTGCGTATGGGTTTCGGAATGTCCAGAACTTGGTCCTGAAGCTCAGGAAGGGCAAGTT
CCCATACCACTTTGTGGAGGTCCTTGCATGTCCTGGAGGATGCTTAAATGGCAGGGGCCAAGCA
CAGACCAAGGACGGACACATGGACAAGTCCCTGCTGCGCCAGATGGAGGGCATCTACGCAGACA
TCCCTGTGCAGCCTCCTGAGTCCAGTGCACACGTGCAGGAGTTGTACCAGGAGTGGCTGGAGGG
CACTGACTCCCTCAGAGCCCGGGAGACCCTGCACACCACCTTCCAGAGCCCGGAGCGCTGCACC
ACCAGCCTGGACATGAAGTGGTGAAGGAAGTCGGGCAGCAGGGCCAGCTGTGAAGTAGGAGAGG
ACTGTGCTGATGAAGAGTTCGCCCTTCAAGGAAACACCAGTGGGCTGCTCTAGTTCTCAGTGCT
CTGTTCCCAACGTGCAGCAGCGTGCAGTGCTGTCTTCATCGTGAGTGTGTGGAGTGGAGTGTTC
ATCATGGGAGAACCTCCCCAGTCTAAGTGTCCCTTTATTGTAAGATTGTGAGAAAAATCCCAAA
GAGCGAGAACAGAGAAAGACGACTGTCTTCTAGATTTGAAAAATTTAAAGTGTCCTGTGAGGAG
CTGAGGCACTGGGGTGACCACTCTGACACTGCAGATGAGAAACGGCCGCAGCGCTGTGCTGTGG
TGCCGGTGACACTGCCGGCCTCTGGGTCATCAGAGTAGGTTGTACTTATTCCCGCTTCCTGGCC
CAGGGTGGTTCTCATTTTTACTTGTACACAGTTTTGAGAATCATTGTAAGTTGGCAACACTGCT
GGTCCCAGCACAGCCCTCCTTGTGCTCCTGATGGCCCCACCTTGGCCCACTGCCCTGCATTGTG
AGCTCACCTTGAAAGGAAGCAGCGTATCCAACAAAACTGGCTGCTGGAGACAGACCCACACGTC
CTCTGCTGCACTGGGATTGGGTTCATCCTGGGGTACAAGCACCTGCAGGGGCTGTGGGGTGCTT
GGGTCTGTTGATGTGTGATGGCCTCAGCATGTTGGGTCGCCTTCGTCCTCTGTTGTGTACCTGT
TTGGGTGTAATTGGACATGTGTTAAATTGCATTTTTTGTTTTTGTTTTGTTTCCTTCCCCTTCA
GTCTGTATATAGTTGGGTGTTAATCCCCCAAACTGATATGAAATAAACTGTTGAAGAGAGAGGA

hide sequence

RefSeq Acc Id:

XM_005407192 ⟹ XP_005407249

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955506	636,533 - 656,732 (-)	NCBI

Sequence:

show sequence

TTCATCCTTACCGCAAATGGAATGTAGTAAAAAGACAAAAACCGAGGATGAAGAGGATGTGTCA
GTTGATGCACCGAGTCTGGCCCAGGAGAATGAAGGGAGTATTCCATAAATTGGCTGATGCCAAG
ATACTGTTGAGTGACTGCCTAGCATGTGACAGCTGCGTGACTGCAGAGGAAGGAGCCCAGCTTT
GTCAGCAGAATGCCAAGGACTTCTTCCGGGTCCTGAACTTTAATAAGAAATGCGATACCTCAAA
GCACAAAGTGCTAGTTGTGTCTGTATGTCCCCAGTCTTTGCCTTATTTTGCTGCTAAATTGAAC
CTCAGTGTCACTGATGCATCCAGACGGCTGTGTGGCTTCCTGAAGAGTCTTGGGGTGCACTATG
TGTTTGACATGACGATAGCTACGGATTTCAGCATCCTGGAGAGTCAGAAAGAATTTGTGCATCG
ATACCATCAGCACAGTGACGAGCAGCGCGTGCTGCCCATGCTGACGTCTGCCTGCCCTGGCTGG
GTCCGATATGCTGAGCGGGTGCTGGGCCGCCCCGTCACCCCCCACCTGTGCACCACCAAGTCCC
CACAGCAGGTCATGGGCTCCTTAGTGAAGGATTACTTCGCCAAACGGCAGAACCTTCCTCCAGA
GAAAATTTTCCATGTTGTTGTGGCCCCTTGCTATGACAGAAAGCTGGAGGCTCTTCAGGAGGGA
TTCTCCACTGCTTTGCCTGGTGCCCGGGGTACTGATTGTGTGTTGACGTCAGGTGAGATCGCTC
AGATAATGGAGCAGAGTGGACTCTCAGTGAAGGACGCTGCTGTGGACACTTTGGTTGGAGATGT
GAAGGATGTAGCTGTGAGGCGCCAAGATGGAGCTGGCTCAGATGGGCACCTGGCACACGTCTTC
CGACACGCAGCAAAGGAGCTGTTCAATGAGCACGTGGAGGAGATCACCTACTGCTCTCTGAGAA
ACAAAGACTTCCAGGAGGTCACCCTTGAAAAGAATGGAGAGGTTCTATTGCGTTTTGCTGCTGC
GTATGGGTTTCGGAATGTCCAGAACTTGGTCCTGAAGCTCAGGAAGGGCAAGTTCCCATACCAC
TTTGTGGAGGTCCTTGCATGTCCTGGAGGATGCTTAAATGGCAGGGGCCAAGCACAGACCAAGG
ACGGACACATGGACAAGTCCCTGCTGCGCCAGATGGAGGGCATCTACGCAGACATCCCTGTGCA
GCCTCCTGAGTCCAGTGCACACGTGCAGGAGTTGTACCAGGAGTGGCTGGAGGGCACTGACTCC
CTCAGAGCCCGGGAGACCCTGCACACCACCTTCCAGAGCCCGGAGCGCTGCACCACCAGCCTGG
ACATGAAGTGGTGAAGGAAGTCGGGCAGCAGGGCCAGCTGTGAAGTAGGAGAGGACTGTGCTGA
TGAAGAGTTCGCCCTTCAAGGAAACACCAGTGGGCTGCTCTAGTTCTCAGTGCTCTGTTCCCAA
CGTGCAGCAGCGTGCAGTGCTGTCTTCATCGTGAGTGTGTGGAGTGGAGTGTTCATCATGGGAG
AACCTCCCCAGTCTAAGTGTCCCTTTATTGTAAGATTGTGAGAAAAATCCCAAAGAGCGAGAAC
AGAGAAAGACGACTGTCTTCTAGATTTGAAAAATTTAAAGTGTCCTGTGAGGAGCTGAGGCACT
GGGGTGACCACTCTGACACTGCAGATGAGAAACGGCCGCAGCGCTGTGCTGTGGTGCCGGTGAC
ACTGCCGGCCTCTGGGTCATCAGAGTAGGTTGTACTTATTCCCGCTTCCTGGCCCAGGGTGGTT
CTCATTTTTACTTGTACACAGTTTTGAGAATCATTGTAAGTTGGCAACACTGCTGGTCCCAGCA
CAGCCCTCCTTGTGCTCCTGATGGCCCCACCTTGGCCCACTGCCCTGCATTGTGAGCTCACCTT
GAAAGGAAGCAGCGTATCCAACAAAACTGGCTGCTGGAGACAGACCCACACGTCCTCTGCTGCA
CTGGGATTGGGTTCATCCTGGGGTACAAGCACCTGCAGGGGCTGTGGGGTGCTTGGGTCTGTTG
ATGTGTGATGGCCTCAGCATGTTGGGTCGCCTTCGTCCTCTGTTGTGTACCTGTTTGGGTGTAA
TTGGACATGTGTTAAATTGCATTTTTTGTTTTTGTTTTGTTTCCTTCCCCTTCAGTCTGTATAT
AGTTGGGTGTTAATCCCCCAAACTGATATGAAATAAACTGTTGAAGAGAGAGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005407247	(Get FASTA)	NCBI Sequence Viewer
	XP_005407248	(Get FASTA)	NCBI Sequence Viewer
	XP_005407249	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000006604
	ENSCLAP00000006604.1

RefSeq Acc Id:	XP_005407248 ⟸ XM_005407191
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V220 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKCEHCTRKECSKKTKTEDEEDVSVDAPSLAQENGEKGVFHKLADAKILLSDCLACDSCVTAEE GAQLCQQNAKDFFRVLNFNKKCDTSKHKVLVVSVCPQSLPYFAAKLNLSVTDASRRLCGFLKSL GVHYVFDMTIATDFSILESQKEFVHRYHQHSDEQRVLPMLTSACPGWVRYAERVLGRPVTPHLC TTKSPQQVMGSLVKDYFAKRQNLPPEKIFHVVVAPCYDRKLEALQEGFSTALPGARGTDCVLTS GEIAQIMEQSGLSVKDAAVDTLVGDVKDVAVRRQDGAGSDGHLAHVFRHAAKELFNEHVEEITY CSLRNKDFQEVTLEKNGEVLLRFAAAYGFRNVQNLVLKLRKGKFPYHFVEVLACPGGCLNGRGQ AQTKDGHMDKSLLRQMEGIYADIPVQPPESSAHVQELYQEWLEGTDSLRARETLHTTFQSPERC TTSLDMKW hide sequence

RefSeq Acc Id:

XP_005407247 ⟸ XM_005407190

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSLCLRKSHASLVGEGHTTWSSSLPQMECSKKTKTEDEEDVSVDAPSLAQENGEKGVFHKLADA
KILLSDCLACDSCVTAEEGAQLCQQNAKDFFRVLNFNKKCDTSKHKVLVVSVCPQSLPYFAAKL
NLSVTDASRRLCGFLKSLGVHYVFDMTIATDFSILESQKEFVHRYHQHSDEQRVLPMLTSACPG
WVRYAERVLGRPVTPHLCTTKSPQQVMGSLVKDYFAKRQNLPPEKIFHVVVAPCYDRKLEALQE
GFSTALPGARGTDCVLTSGEIAQIMEQSGLSVKDAAVDTLVGDVKDVAVRRQDGAGSDGHLAHV
FRHAAKELFNEHVEEITYCSLRNKDFQEVTLEKNGEVLLRFAAAYGFRNVQNLVLKLRKGKFPY
HFVEVLACPGGCLNGRGQAQTKDGHMDKSLLRQMEGIYADIPVQPPESSAHVQELYQEWLEGTD
SLRARETLHTTFQSPERCTTSLDMKW

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RefSeq Acc Id:

XP_005407249 ⟸ XM_005407192

- Peptide Label:

isoform X3

- Sequence:

show sequence

MKRMCQLMHRVWPRRMKGVFHKLADAKILLSDCLACDSCVTAEEGAQLCQQNAKDFFRVLNFNK
KCDTSKHKVLVVSVCPQSLPYFAAKLNLSVTDASRRLCGFLKSLGVHYVFDMTIATDFSILESQ
KEFVHRYHQHSDEQRVLPMLTSACPGWVRYAERVLGRPVTPHLCTTKSPQQVMGSLVKDYFAKR
QNLPPEKIFHVVVAPCYDRKLEALQEGFSTALPGARGTDCVLTSGEIAQIMEQSGLSVKDAAVD
TLVGDVKDVAVRRQDGAGSDGHLAHVFRHAAKELFNEHVEEITYCSLRNKDFQEVTLEKNGEVL
LRFAAAYGFRNVQNLVLKLRKGKFPYHFVEVLACPGGCLNGRGQAQTKDGHMDKSLLRQMEGIY
ADIPVQPPESSAHVQELYQEWLEGTDSLRARETLHTTFQSPERCTTSLDMKW

hide sequence

Ensembl Acc Id:

ENSCLAP00000006604 ⟸ ENSCLAT00000006714

Protein Domains

Iron hydrogenase small subunit

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000004659	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000006714	ENTREZGENE
	ENSCLAT00000006714.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.1780	UniProtKB/TrEMBL
	Fe-only Hydrogenase (Larger Subunit), Chain L, domain 3	UniProtKB/TrEMBL
InterPro	Cytosolic_Fe-S_CAF	UniProtKB/TrEMBL
	Fe_hydrogenase	UniProtKB/TrEMBL
	Fe_hydrogenase_lsu_C	UniProtKB/TrEMBL
	Fe_hydrogenase_ssu	UniProtKB/TrEMBL
NCBI Gene	Narf	ENTREZGENE
PANTHER	NITRATE, FORMATE, IRON DEHYDROGENASE	UniProtKB/TrEMBL
Pfam	Fe_hyd_lg_C	UniProtKB/TrEMBL
	Fe_hyd_SSU	UniProtKB/TrEMBL
SMART	Fe_hyd_SSU	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53920	UniProtKB/TrEMBL
UniProt	A0A8C2V220	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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