Narf (nuclear prelamin A recognition factor) - Rat Genome Database

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Gene: Narf (nuclear prelamin A recognition factor) Heterocephalus glaber
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Symbol: Narf
Name: nuclear prelamin A recognition factor
RGD ID: 18932100
Description: ENCODES a protein that exhibits lamin binding (ortholog); ASSOCIATED WITH Generalized Epilepsy (ortholog); FOUND IN lamin filament (ortholog); nuclear lumen (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480111,220,128 - 11,240,760 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480111,220,065 - 11,241,703 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Narf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480111,220,128 - 11,240,760 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480111,220,065 - 11,241,703 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NARF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,458,198 - 82,490,537 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,458,180 - 82,490,537 (+)EnsemblGRCh38hg38GRCh38
GRCh371780,416,074 - 80,448,413 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361778,009,349 - 78,039,432 (+)NCBINCBI36Build 36hg18NCBI36
Celera1777,007,484 - 77,037,920 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1775,814,115 - 75,844,050 (+)NCBIHuRef
CHM1_11780,502,109 - 80,532,338 (+)NCBICHM1_1
T2T-CHM13v2.01783,327,121 - 83,359,460 (+)NCBIT2T-CHM13v2.0
Narf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911121,128,062 - 121,146,682 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11121,128,079 - 121,146,682 (+)EnsemblGRCm39 Ensembl
GRCm3811121,237,236 - 121,255,856 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,237,253 - 121,255,856 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711121,098,550 - 121,117,170 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611121,053,343 - 121,071,945 (+)NCBIMGSCv36mm8
Celera11132,975,471 - 132,994,092 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1185.12NCBI
Narf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810107,017,344 - 107,035,777 (+)NCBIGRCr8
mRatBN7.210106,519,508 - 106,537,494 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,519,444 - 106,537,486 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10111,621,783 - 111,639,594 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010111,084,836 - 111,102,648 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010106,439,981 - 106,457,913 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010110,445,765 - 110,463,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,445,797 - 110,463,727 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010110,032,434 - 110,050,386 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,476,230 - 110,494,161 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110110,490,719 - 110,507,093 (+)NCBI
Celera10105,057,775 - 105,074,134 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
Narf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506636,533 - 657,561 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955506636,533 - 657,561 (-)NCBIChiLan1.0ChiLan1.0
NARF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21998,997,331 - 99,026,182 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117103,900,137 - 103,932,396 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01776,868,782 - 76,897,561 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11782,674,127 - 82,703,116 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,674,127 - 82,703,116 (+)Ensemblpanpan1.1panPan2
NARF
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha9514,404 - 532,863 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09505,739 - 524,194 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9505,739 - 524,171 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19500,279 - 518,730 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09661,706 - 680,157 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09736,237 - 754,974 (-)NCBIUU_Cfam_GSD_1.0
Narf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602467,317 - 487,865 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493692382,228 - 102,311 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493692382,257 - 102,769 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NARF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl12632,363 - 651,817 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.112632,353 - 651,824 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21286,009 - 105,359 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NARF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,374,080 - 74,401,018 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,374,015 - 74,403,453 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607746,010,642 - 46,040,095 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012433   ⟹   ENSHGLP00000012299
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462480111,220,128 - 11,240,760 (+)Ensembl
RefSeq Acc Id: XM_004861042   ⟹   XP_004861099
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480111,220,072 - 11,239,753 (+)NCBI
RefSeq Acc Id: XM_013078204   ⟹   XP_012933658
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480111,220,134 - 11,239,753 (+)NCBI
RefSeq Acc Id: XM_021241127   ⟹   XP_021096786
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480111,220,133 - 11,241,703 (+)NCBI
RefSeq Acc Id: XM_021241128   ⟹   XP_021096787
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480111,220,132 - 11,241,703 (+)NCBI
RefSeq Acc Id: XM_021241129   ⟹   XP_021096788
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462480111,220,065 - 11,241,703 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004861099 (Get FASTA)   NCBI Sequence Viewer  
  XP_012933658 (Get FASTA)   NCBI Sequence Viewer  
  XP_021096786 (Get FASTA)   NCBI Sequence Viewer  
  XP_021096787 (Get FASTA)   NCBI Sequence Viewer  
  XP_021096788 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012299
GenBank Protein JAO00561 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021096788   ⟸   XM_021241129
- Peptide Label: isoform X4
- UniProtKB: G5BJA7 (UniProtKB/TrEMBL),   A0AAX6RKD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004861099   ⟸   XM_004861042
- Peptide Label: isoform X5
- UniProtKB: A0A0P6JAP7 (UniProtKB/TrEMBL),   G5BJA7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096787   ⟸   XM_021241128
- Peptide Label: isoform X2
- UniProtKB: G5BJA7 (UniProtKB/TrEMBL),   A0AAX6RM13 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021096786   ⟸   XM_021241127
- Peptide Label: isoform X1
- UniProtKB: G5BJA7 (UniProtKB/TrEMBL),   A0AAX6RJC1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012933658   ⟸   XM_013078204
- Peptide Label: isoform X3
- UniProtKB: G5BJA7 (UniProtKB/TrEMBL),   A0AAX6R6P5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000012299   ⟸   ENSHGLT00000012433


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008789 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012433 ENTREZGENE
Gene3D-CATH 3.40.50.1780 UniProtKB/TrEMBL
InterPro Cytosolic_Fe-S_CAF UniProtKB/TrEMBL
  Fe_hydrogenase UniProtKB/TrEMBL
  Fe_hydrogenase_lsu_C UniProtKB/TrEMBL
  Fe_hydrogenase_ssu UniProtKB/TrEMBL
KEGG Report hgl:101707538 UniProtKB/TrEMBL
NCBI Gene Narf ENTREZGENE
PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE UniProtKB/TrEMBL
  NUCLEAR PRELAMIN A RECOGNITION FACTOR UniProtKB/TrEMBL
Pfam Fe_hyd_lg_C UniProtKB/TrEMBL
  Fe_hyd_SSU UniProtKB/TrEMBL
SMART Fe_hyd_SSU UniProtKB/TrEMBL
Superfamily-SCOP SSF53920 UniProtKB/TrEMBL
UniProt A0A0P6JAP7 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6R6P5 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RJC1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RKD1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RM13 ENTREZGENE, UniProtKB/TrEMBL
  G5BJA7 ENTREZGENE, UniProtKB/TrEMBL