LOC102014546 (scavenger receptor cysteine-rich type 1 protein M130) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC102014546 (scavenger receptor cysteine-rich type 1 protein M130) Chinchilla lanigera
Analyze
Symbol: LOC102014546 (Ensembl: CD163)
Name: scavenger receptor cysteine-rich type 1 protein M130 (Ensembl:CD163 molecule)
RGD ID: 8800660
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Cd163; CD163 molecule
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554135,047,066 - 5,071,929 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554135,044,633 - 5,071,935 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000023738   ⟹   ENSCLAP00000023515
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554135,047,066 - 5,071,929 (-)Ensembl
RefSeq Acc Id: XM_005378865   ⟹   XP_005378922
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554135,044,633 - 5,071,934 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013511513   ⟹   XP_013366967
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554135,044,633 - 5,071,935 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378922 (Get FASTA)   NCBI Sequence Viewer  
  XP_013366967 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000023515
  ENSCLAP00000023515.1
RefSeq Acc Id: XP_005378922   ⟸   XM_005378865
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YU57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013366967   ⟸   XM_013511513
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000023515   ⟸   ENSCLAT00000023738
Protein Domains
SRCR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016131 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023738 ENTREZGENE
  ENSCLAT00000023738.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.250.10 UniProtKB/TrEMBL
InterPro SRCR UniProtKB/TrEMBL
  SRCR-like_dom UniProtKB/TrEMBL
  SRCR-like_dom_sf UniProtKB/TrEMBL
  SRCR-S1_Scavenger_Rcptor UniProtKB/TrEMBL
NCBI Gene Cd163 ENTREZGENE
PANTHER SRCR DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  SRCR DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam SRCR UniProtKB/TrEMBL
PRINTS SPERACTRCPTR UniProtKB/TrEMBL
PROSITE SRCR_1 UniProtKB/TrEMBL
  SRCR_2 UniProtKB/TrEMBL
SMART SM00202 UniProtKB/TrEMBL
Superfamily-SCOP SSF56487 UniProtKB/TrEMBL
UniProt A0A8C2YU57 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102014546  scavenger receptor cysteine-rich type 1 protein M130  Cd163  CD163 molecule  Symbol and/or name change 5135510 APPROVED