LOC102549716 (high mobility group protein B1-like) - Rat Genome Database

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Gene: LOC102549716 (high mobility group protein B1-like) Rattus norvegicus
Analyze
Symbol: LOC102549716 (Ensembl: AABR07072539.5)
Name: high mobility group protein B1-like
RGD ID: 7733938
Description: Predicted to enable ATP binding activity and protein kinase activity. Predicted to be involved in protein phosphorylation.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103690246; serine/threonine-protein kinase MARK2-like; sperm motility kinase X-like; uncharacterized LOC103690246
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81715,045,186 - 15,131,044 (-)NCBIGRCr8
mRatBN7.21714,845,351 - 14,924,605 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1714,838,736 - 14,862,195 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1714,914,664 - 14,923,701 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01715,298,894 - 15,339,696 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01717,378,013 - 17,395,417 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1714,615,769 - 14,656,348 (-)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Variants

.
Variants in LOC102549716
501 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17169599340Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17999128640540197Rat
631499Stl1Serum triglyceride level QTL 13.6blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)17327139827389946Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17435448727028127Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17211514934551001Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920136523653323Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1354651Lmblg2Limb length QTL 26tibia length (VT:0004357)tibia length (CMO:0000450)17429913069599340Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131701463Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17452803849528038Rat
1354630Cm34Cardiac mass QTL 348.7heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)17429913069599340Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920136523653323Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)17429913069599340Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)171398677321975515Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17429913035837242Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17429913021293263Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17452803849528038Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17131990913Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17797996816317111Rat
2303561Bw91Body weight QTL 912body mass (VT:0001259)body weight (CMO:0000012)17886846253868462Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17137830672Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920136523653323Rat
1354596Bw32Body weight QTL 324.5body mass (VT:0001259)body weight (CMO:0000012)17429913060781592Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17169599340Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17435448727028127Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17160781592Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17211514921881669Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920136523653323Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122871563Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063276879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000116259   ⟹   ENSRNOP00000092102
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1714,838,736 - 14,862,195 (-)Ensembl
RefSeq Acc Id: XM_063276879   ⟹   XP_063132949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,788 (-)NCBI
RefSeq Acc Id: XM_063276880   ⟹   XP_063132950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,788 (-)NCBI
RefSeq Acc Id: XM_063276881   ⟹   XP_063132951
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,788 (-)NCBI
RefSeq Acc Id: XM_063276882   ⟹   XP_063132952
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,788 (-)NCBI
RefSeq Acc Id: XM_063276884   ⟹   XP_063132954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,787 (-)NCBI
RefSeq Acc Id: XM_063276885   ⟹   XP_063132955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,788 (-)NCBI
RefSeq Acc Id: XM_063276886   ⟹   XP_063132956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,127,073 (-)NCBI
RefSeq Acc Id: XM_063276887   ⟹   XP_063132957
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,127,073 (-)NCBI
RefSeq Acc Id: XM_063276888   ⟹   XP_063132958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,788 (-)NCBI
RefSeq Acc Id: XM_063276889   ⟹   XP_063132959
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,788 (-)NCBI
RefSeq Acc Id: XM_063276890   ⟹   XP_063132960
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,788 (-)NCBI
RefSeq Acc Id: XM_063276891   ⟹   XP_063132961
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,788 (-)NCBI
RefSeq Acc Id: XM_063276892   ⟹   XP_063132962
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,788 (-)NCBI
RefSeq Acc Id: XM_063276893   ⟹   XP_063132963
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,045,186 - 15,068,788 (-)NCBI
RefSeq Acc Id: XM_063276895   ⟹   XP_063132965
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,062,985 - 15,131,044 (-)NCBI
RefSeq Acc Id: XM_063276896   ⟹   XP_063132966
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,062,985 - 15,131,044 (-)NCBI
RefSeq Acc Id: XM_063276897   ⟹   XP_063132967
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,111,035 - 15,131,044 (-)NCBI
RefSeq Acc Id: XM_063276898   ⟹   XP_063132968
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,105,470 - 15,131,044 (-)NCBI
RefSeq Acc Id: XM_063276899   ⟹   XP_063132969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81715,105,470 - 15,131,044 (-)NCBI
Ensembl Acc Id: ENSRNOP00000092102   ⟸   ENSRNOT00000116259
RefSeq Acc Id: XP_063132957   ⟸   XM_063276887
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132956   ⟸   XM_063276886
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132959   ⟸   XM_063276889
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132958   ⟸   XM_063276888
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132963   ⟸   XM_063276893
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132955   ⟸   XM_063276885
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132951   ⟸   XM_063276881
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132950   ⟸   XM_063276880
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132962   ⟸   XM_063276892
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132961   ⟸   XM_063276891
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132960   ⟸   XM_063276890
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132952   ⟸   XM_063276882
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132949   ⟸   XM_063276879
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132954   ⟸   XM_063276884
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GK16 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132965   ⟸   XM_063276895
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G5Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132966   ⟸   XM_063276896
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G5Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132969   ⟸   XM_063276899
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G5Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132968   ⟸   XM_063276898
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G5Z0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063132967   ⟸   XM_063276897
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G5Z0 (UniProtKB/TrEMBL)
Protein Domains
Protein kinase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-10011 BioCyc
Ensembl Genes ENSRNOG00000060029 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000068535 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000085586.2 UniProtKB/TrEMBL
  ENSRNOT00000116259.1 UniProtKB/TrEMBL
Gene3D-CATH DNA helicase RuvA subunit, C-terminal domain UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene LOC102549716 ENTREZGENE
PANTHER GENE 10662-RELATED UniProtKB/TrEMBL
  MAP/MICROTUBULE AFFINITY-REGULATING KINASE UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PhenoGen LOC102549716 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
RatGTEx ENSRNOG00000060029 RatGTEx
  ENSRNOG00000068535 RatGTEx
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A8I6G5Z0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GK16 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC102549716  high mobility group protein B1-like  LOC103690246  uncharacterized LOC103690246  Data merged from RGD:9192559 737654 PROVISIONAL
2014-08-25 LOC103690246  uncharacterized LOC103690246      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-18 LOC102549716  high mobility group protein B1-like      Symbol and Name status set to provisional 70820 PROVISIONAL