LOC102552888 (uncharacterized LOC102552888) - Rat Genome Database

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Gene: LOC102552888 (uncharacterized LOC102552888) Rattus norvegicus
Analyze
Symbol: LOC102552888
Name: uncharacterized LOC102552888
RGD ID: 7633259
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,856,720 - 187,862,395 (-)NCBIGRCr8
mRatBN7.23167,478,009 - 167,483,967 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.03175,760,715 - 175,771,024 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03181,349,054 - 181,353,901 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3165,096,268 - 165,102,159 (+)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102552888
35 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_005502876
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,858,321 - 187,862,395 (-)NCBI
mRatBN7.23167,480,751 - 167,483,967 (-)NCBI
RefSeq Acc Id: XR_005502877
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83187,856,720 - 187,862,395 (-)NCBI
mRatBN7.23167,478,009 - 167,483,962 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-46355 BioCyc
NCBI Gene LOC102552888 ENTREZGENE
PhenoGen LOC102552888 PhenoGen
RNAcentral URS0000CCE25F RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102552888  uncharacterized LOC102552888      Symbol and Name status set to provisional 70820 PROVISIONAL