Snora58 (small nucleolar RNA, H/ACA box 58) - Rat Genome Database

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Gene: Snora58 (small nucleolar RNA, H/ACA box 58) Rattus norvegicus
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Symbol: Snora58
Name: small nucleolar RNA, H/ACA box 58
RGD ID: 7489013
Description: Orthologous to human SNORA58 (small nucleolar RNA, H/ACA box 58); INTERACTS WITH atrazine; bleomycin A2; cadmium dichloride.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 3068; Mir3068; rno-mir-3068
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,811,875 - 112,811,950 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.26107,080,945 - 107,081,020 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6107,080,945 - 107,081,020 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6107,249,853 - 107,249,928 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06107,548,670 - 107,548,745 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,918,368 - 106,918,443 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06111,468,732 - 111,468,807 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,468,732 - 111,468,807 (-)Ensemblrn6Rnor6.0
Celera6104,900,676 - 104,900,751 (-)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:22470567   PMID:22605339   PMID:22908386   PMID:23185045   PMID:31792968  


Genomics

Comparative Map Data
Snora58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86112,811,875 - 112,811,950 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.26107,080,945 - 107,081,020 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6107,080,945 - 107,081,020 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6107,249,853 - 107,249,928 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06107,548,670 - 107,548,745 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06106,918,368 - 106,918,443 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06111,468,732 - 111,468,807 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6111,468,732 - 111,468,807 (-)Ensemblrn6Rnor6.0
Celera6104,900,676 - 104,900,751 (-)NCBICelera
Cytogenetic Map6q31NCBI
SNORA58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383131,478,998 - 131,479,233 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,479,097 - 131,479,233 (-)Ensemblhg38GRCh38
GRCh373131,197,842 - 131,198,077 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,680,631 - 132,680,767 (-)NCBIBuild 36Build 36hg18NCBI36
Celera3129,623,964 - 129,624,100 (-)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3128,582,654 - 128,582,889 (-)NCBIHuRef
CHM1_13131,161,264 - 131,161,499 (-)NCBICHM1_1
T2T-CHM13v2.03134,222,750 - 134,222,985 (-)NCBIT2T-CHM13v2.0
Mir3068
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391287,484,449 - 87,484,527 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1287,484,449 - 87,484,527 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm39 Ensembl1287,484,452 - 87,484,587 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381287,437,679 - 87,437,757 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1287,437,679 - 87,437,757 (-)Ensemblmm10GRCm38
Celera1288,902,327 - 88,902,405 (-)NCBICelera
Cytogenetic Map12D2NCBI
cM Map1241.66NCBI

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:114
Interacting mature miRNAs:124
Transcripts:ENSRNOT00000053532
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
7 6 41 92 60 60 35 25 35 3 157 79 77 30 41 25 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_106672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000053532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6107,080,945 - 107,081,020 (-)Ensembl
Rnor_6.0 Ensembl6111,468,732 - 111,468,807 (-)Ensembl
RefSeq Acc Id: NR_106672
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86112,811,875 - 112,811,950 (-)NCBI
mRatBN7.26107,080,945 - 107,081,020 (-)NCBI
Rnor_6.06111,468,732 - 111,468,807 (-)NCBI
Celera6104,900,676 - 104,900,751 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7489013 AgrOrtholog
BioCyc Gene G2FUF-36706 BioCyc
Ensembl Genes ENSRNOG00000035409 Ensembl
  ENSRNOG00000059872 ENTREZGENE
Ensembl Transcript ENSRNOT00000088711 ENTREZGENE
miRBase MI0021534 ENTREZGENE
NCBI Gene Mir3068 ENTREZGENE
PhenoGen Snora58 PhenoGen
RatGTEx ENSRNOG00000035409 RatGTEx
  ENSRNOG00000059872 RatGTEx
RNAcentral URS0000260681 RNACentral
  URS000057B035 RNACentral
  URS000075A7BC RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-10-26 Snora58  small nucleolar RNA, H/ACA box 58  Mir3068  microRNA 3068  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-04-09 Mir3068  microRNA 3068  Mir3068  microRNA mir-3068  Name updated 61478 APPROVED
2013-12-10 Mir3068  microRNA mir-3068      Symbol and Name status set to provisional 70820 PROVISIONAL