Galnt11 (polypeptide N-acetylgalactosaminyltransferase 11)

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Gene: Galnt11 (polypeptide N-acetylgalactosaminyltransferase 11) Rattus norvegicus

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Symbol:

Galnt11

Name:

polypeptide N-acetylgalactosaminyltransferase 11

RGD ID:

735097

Description:

Predicted to enable Notch binding activity and polypeptide N-acetylgalactosaminyltransferase activity. Predicted to be involved in several processes, including Notch signaling involved in heart development; protein O-linked glycosylation via threonine; and regulation of Notch signaling pathway. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT11 (polypeptide N-acetylgalactosaminyltransferase 11); PARTICIPATES IN O-linked glycan biosynthetic pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

:polypeptide N-acetylgalactosaminyltransferase 11; galNAc-T11; polypeptide GalNAc transferase 11; pp-GaNTase 11; protein-UDP acetylgalactosaminyltransferase 11; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 11; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	10,571,464 - 10,604,974 (-)	NCBI		GRCr8
mRatBN7.2	4	9,837,629 - 9,871,141 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	9,837,629 - 9,871,140 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	14,833,739 - 14,867,225 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	10,648,009 - 10,681,495 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	9,000,604 - 9,034,090 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	6,297,255 - 6,330,765 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	6,297,258 - 6,330,765 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	6,318,181 - 6,351,691 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	5,241,867 - 5,275,305 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	5,241,868 - 5,275,305 (-)	NCBI
Celera	4	448,605 - 482,107 (+)	NCBI		Celera
Cytogenetic Map	4	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Kleefstra syndrome 2 (ISO)

lethal congenital glycogen storage disease of heart (ISO)

long QT syndrome (ISO)

megacolon (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,1-dichloroethene (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-methylcholine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

bisphenol F (ISO)

butanal (ISO)

cadmium dichloride (EXP)

ciguatoxin CTX1B (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

disodium selenite (ISO)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

enzalutamide (ISO)

epoxiconazole (ISO)

fluoxetine (ISO)

folic acid (ISO)

glafenine (EXP)

indometacin (ISO)

isobutanol (ISO)

lead(0) (ISO)

menadione (ISO)

mercury dichloride (EXP)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

nickel dichloride (ISO)

ochratoxin A (ISO)

paracetamol (EXP,ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

pirinixic acid (ISO)

quercetin (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

Triptolide (EXP)

valproic acid (ISO)

vancomycin (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (ISS)

determination of left/right symmetry (ISS)

Notch receptor processing (ISS)

Notch signaling involved in heart development (ISS)

protein glycosylation (IEA)

protein O-linked glycosylation (IBA)

protein O-linked glycosylation via threonine (IEA,ISO,ISS)

regulation of Notch signaling pathway (IBA,ISS)

Cellular Component

Golgi apparatus (IBA)

Golgi membrane (IEA)

Molecular Function

carbohydrate binding (IEA)

metal ion binding (IEA)

Notch binding (IBA,IEA,ISO,ISS)

polypeptide N-acetylgalactosaminyltransferase activity (IBA,IEA,ISO,ISS)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

O-linked glycan biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
7.	Expression of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase isoforms in murine tissues determined by real-time PCR: a new view of a large family.	Young WW Jr, etal., Glycobiology 2003 Jul;13(7):549-57. Epub 2003 Mar 19.

Additional References at PubMed

PMID:15489334	PMID:24226769

Genomics

Comparative Map Data

Galnt11
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	10,571,464 - 10,604,974 (-)	NCBI		GRCr8
mRatBN7.2	4	9,837,629 - 9,871,141 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	9,837,629 - 9,871,140 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	14,833,739 - 14,867,225 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	10,648,009 - 10,681,495 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	9,000,604 - 9,034,090 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	6,297,255 - 6,330,765 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	6,297,258 - 6,330,765 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	6,318,181 - 6,351,691 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	5,241,867 - 5,275,305 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	5,241,868 - 5,275,305 (-)	NCBI
Celera	4	448,605 - 482,107 (+)	NCBI		Celera
Cytogenetic Map	4	q11	NCBI

GALNT11
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	152,025,674 - 152,122,340 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	152,025,674 - 152,122,340 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	151,722,759 - 151,819,425 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	151,353,711 - 151,450,360 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	151,160,511 - 151,257,072	NCBI
Celera	7	146,280,345 - 146,376,985 (+)	NCBI		Celera
Cytogenetic Map	7	q36.1	NCBI
HuRef	7	145,534,301 - 145,630,873 (+)	NCBI		HuRef
CHM1_1	7	151,731,375 - 151,827,951 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	153,198,601 - 153,295,227 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	151,049,949 - 151,146,598 (+)	NCBI

Galnt11
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	25,427,732 - 25,470,916 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	25,426,902 - 25,470,916 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	25,222,872 - 25,265,918 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	25,221,904 - 25,265,918 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	24,728,711 - 24,771,736 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	24,732,958 - 24,775,983 (+)	NCBI		MGSCv36	mm8
Celera	5	22,168,511 - 22,201,958 (+)	NCBI		Celera
Cytogenetic Map	5	A3- B1	NCBI
cM Map	5	12.35	NCBI

Galnt11
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955491	6,218,608 - 6,239,013 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955491	6,218,589 - 6,239,416 (+)	NCBI	ChiLan1.0	ChiLan1.0

GALNT11
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	188,440,136 - 188,537,585 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	40,450,311 - 40,547,851 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	143,604,679 - 143,702,239 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	155,784,191 - 155,848,176 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	155,804,409 - 155,848,176 (+)	Ensembl	panpan1.1		panPan2

GALNT11
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	15,901,246 - 15,951,732 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	15,901,406 - 15,951,359 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	16,514,229 - 16,564,708 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	17,624,255 - 17,675,273 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	17,624,288 - 17,675,275 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	16,001,487 - 16,051,970 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	16,582,216 - 16,633,231 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	16,633,983 - 16,684,460 (+)	NCBI		UU_Cfam_GSD_1.0

Galnt11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	5,597,262 - 5,638,397 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936527	7,280,265 - 7,306,304 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936527	7,264,831 - 7,306,104 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GALNT11
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	5,289,917 - 5,348,058 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	5,291,526 - 5,348,113 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	5,599,826 - 5,656,521 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GALNT11
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	120,207,410 - 120,287,339 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	120,207,464 - 120,286,688 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666072	16,191,017 - 16,272,361 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Galnt11
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624800	4,794,436 - 4,866,248 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Galnt11
103 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	65
Count of miRNA genes:	55
Interacting mature miRNAs:	60
Transcripts:	ENSRNOT00000011814
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61408	Scl23	Serum cholesterol level QTL 23		0.0005	blood HDL phospholipid amount (VT:0010504)	serum high density lipoprotein phospholipid level (CMO:0001567)	4	1	27716890	Rat
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5218294	57114705	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
9589046	Scfw2	Subcutaneous fat weight QTL 2	5.54	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	4	1	31934116	Rat
8552903	Pigfal2	Plasma insulin-like growth factor 1 level QTL 2	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	1	31934116	Rat
724557	Plsm1	Polydactyly-luxate syndrome (PLS) morphotypes QTL 1		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	4	1	27716890	Rat
9590100	Sffal4	Serum free fatty acids level QTL 4	7.36	0.05	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	4	1	31934116	Rat
61351	Bp33	Blood pressure QTL 33		0.0018	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	1	27716890	Rat
61415	Eae11	Experimental allergic encephalomyelitis QTL 11	2.9		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	4	1	39505420	Rat
1641905	Colcr1	Colorectal carcinoma resistance QTL 1	4.3	0.0003	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	4	1	29494328	Rat
1357341	Gluco5	Glucose level QTL 5	6.4		adipocyte free fatty acid secretion trait (VT:0010465)	absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)	4	1	33250345	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	5214602	78882945	Rat
1357343	Gluco4	Glucose level QTL 4		0.00002	adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	4	1	33250345	Rat
1358201	Gluco12	Glucose level QTL12	1.6		adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake (CMO:0000870)	4	5218392	29593287	Rat
738021	Hcar13	Hepatocarcinoma resistance QTL 13	4.3		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	4	1	32584199	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5218294	65958103	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5219178	56647776	Rat
61333	Gluco16	Glucose level QTL 16	4.3	0.00001	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	1	30372989	Rat
634323	Hc2	Hypercalciuria QTL 2	2.15		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	4	210796	45210796	Rat
9589097	Slep11	Serum leptin concentration QTL 11	5.09	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	4	1	31934116	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_199393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC062004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000011814 ⟹ ENSRNOP00000011815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	9,837,629 - 9,871,140 (-)	Ensembl
Rnor_6.0 Ensembl	4	6,297,258 - 6,330,765 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078077 ⟹ ENSRNOP00000074237

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	9,837,629 - 9,871,086 (-)	Ensembl
Rnor_6.0 Ensembl	4	6,297,258 - 6,330,699 (-)	Ensembl

RefSeq Acc Id:

NM_001271319 ⟹ NP_001258248

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	10,571,464 - 10,604,974 (-)	NCBI
mRatBN7.2	4	9,837,629 - 9,871,140 (-)	NCBI
Rnor_6.0	4	6,297,255 - 6,330,765 (-)	NCBI
Rnor_5.0	4	6,318,181 - 6,351,691 (-)	NCBI
Celera	4	448,605 - 482,107 (+)	NCBI

Sequence:

show sequence

ATCGGAGGCGGGGGCATGCGTGCCGTGACGTGAGCCCTGGAGCGCGGCTCCGTAAGGCTGCGTG
TCGTGGGCCGCGTTGCGCGGCGCGGCTCGTGCGGCTCGGCCCGGGCTGTGGCGGGAGCGAAGAT
GCCACAGCCCGTGCCCCGGAGCGCCGCTATCCCGGCCTGCGGGTGTCGCGATGTTCAGCTTCTC
ATTTTCCAACCACTTTCTTCAGCACTCGCTCAGCCTCTTAGGCACCTTGAATCACCAGTCTGGT
CACAGGGAACTGAAAATGGCCTTTGAGCTATGCTAGGTCTATGATGGGCAGTGTCACAATTCGA
TATTTCTGCTACGGGTGCCTCTTTACATCTGCTACCTGGACAGTTCTGCTTTTCATTTATTTTA
ACTTCAGTGAAGTGACTCAGCCCCTTAGGAATGTGCCCATCAAGGGGTCTGGGCCCCATGGGCC
GTTTCCCAAAAAATTCTACCCACGTTTCACTCGAGGTCCAGGCCGAGTATTAGAGCCACAGTTC
AAAGCAAACAGAATGGACGATTTGATGAATAATAACATTGAAGATCCAGATAAAGGCCTCTCAA
AATCTTCCTCTGAGCTAGGTATGATTTTCAATGAACGTGATCAGGAATTGAGAGACCTGGGCTA
CCAGAAACACGCCTTTAATATGCTCATTAGTAACCGCTTGGGGTACCACAGAGACGTGCCAGAC
ACCAGGAATGCAGAGTGTAGGGGGAAGTCCTACCCAACTGACCTGCCAACTGCTAGCGTTGTTA
TCTGTTTCTACAACGAAGCTTTTTCTGCCTTGTTGCGGACTGTGCACAGTGTTGTGGACCGCAC
GCCGGCACACCTTCTCCATGAGATCATCCTCGTGGATGACAGCAGTGACTTTGATGATTTAAAA
GGAGAACTAGATGAGTACATCCAAAGATACCTGCCCGCAAAGGTCAAGGTCATAAGAAATATGA
AGCGAGAGGGACTGATCCGAGGAAGAATGATTGGAGCAGCCCACGCTACAGGAGAAGTCCTGGT
CTTCCTGGACAGCCACTGCGAAGTGAATGTGATGTGGTTACAGCCCCTTCTGGCCATCATCCTT
GAAGACCCACATACAGTGGTGTGCCCTGTGATTGACATCATCAGTGCTGACACACTCGCTTACA
GTTCATCCCCAGTGGTTCGGGGAGGTTTCAACTGGGGGCTGCACTTCAAGTGGGATCTAGTTCC
TGTATCTGACCTGGGAGGCGCAGACAGTGCCACAGCCCCAATACGGTCACCTACAATGGCCGGA
GGACTGTTTGCCATGAACAGACAGTATTTCAATGATCTTGGACAGTATGACAGTGGCATGGATA
TCTGGGGAGGAGAAAATCTGGAAATCTCATTTCGGATCTGGATGTGCGGCGGCAAGCTCTTCAT
CATCCCTTGCTCAAGAGTCGGGCACATTTTTCGGAAAAGGCGACCGTATGGATCTCCTGAAGGC
CAGGACACCATGACACACAACTCGCTGAGACTGGCACATGTGTGGCTGGATGAGTACAAGGAGC
AGTATTTTTCCTTAAGACCTGATTTGAAGACCAAAAGCTTTGGGAATATCAGCGAGCGTGTTGA
ATTGAGGAAGAAACTGGGCTGTCAGTCGTTCAAGTGGTATTTGGATAATGTTTACCCTGAGATG
CAGGTGTCTGGTCCGAAGGCCAGACTGCAGCAGCCCGTGTTCATCAACAGAGGACCGAAGCGCC
CCAGAGTCCTGCTGCGTGGAAGGCTCTACCACTTGCAGACCAACAAATGCCTGGTGGCCCAGGG
CCGCTCCAGCCAGAAAGGAGGCCTGGTGCTGCTTAAGGCCTGTGACTACGGAGACCCAACTCAG
GTCTGGATTTACAACGAAGAGCATGAATTGATCTTAAACAACCTCCTTTGCCTCGACATGTCAG
AAACCCGCTCGTCAGACCCTCCTCGACTCATGAAGTGCCACGGGTCAGGAGGGTCGCAGCAGTG
GACCTTTGGGAAGAACAATCGGCTGTACCAAGTGTCGGTTGGGCAGTGCCTGAGAGTTGTGGAC
CAGATGGATCAGAAGGGCTACGTCGGCATGGCGATCTGTGATGGCTCCTCTTCCCAACAGTGGC
GCCTAGAAGGCTAAAGGTGGGCGGGCCCTGGCTGGGGGCAACTAATTCACCTGGTTTTGTCACG
CCTGCCATAAGTCAAGGTGCTTTGTAAAAGATGTTGTTGACTGCAAAAGGCAAGAACCTGCTGC
AGGGCAGCCATCTCAGGGTCTTCACTGGAATTGGTTAATTTCCGGGCTGCTGTTAAGGGATTCT
TATTTATCCAGGGAAGACAGAAAATAACTGTAAAGAGTTGGTCTACCTAGGATAAACCCAGGAA
GTAGGTGTTTCTGTTCATATTCATGTTTCTCTTGTTCTCCCTTGGAGATGGAATGGTTTCTGTC
TTAACAGGAACTTGTCACAATTTCCTTTCGTAGAGGACTTCATAAGAGATTTTTTTTCTACTTT
TATCATGTTTAATGTTCCAAATAGATTTTAAAAACTGGTTGAGTGCATATTACTTTTAGCTTCA
GAAGATAACATGTATATTTAAGAGGCATCTAACTATTATAAATTATTTTGATGACTTACTAGGC
TGTCTACATTAAATAAAGGATCTCTTTGATCATTTAACAAGGA

hide sequence

RefSeq Acc Id:

NM_199393 ⟹ NP_955425

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	10,571,464 - 10,604,974 (-)	NCBI
mRatBN7.2	4	9,837,629 - 9,871,140 (-)	NCBI
Rnor_6.0	4	6,297,255 - 6,330,765 (-)	NCBI
Rnor_5.0	4	6,318,181 - 6,351,691 (-)	NCBI
RGSC_v3.4	4	5,241,867 - 5,275,305 (-)	RGD
Celera	4	448,605 - 482,107 (+)	NCBI

Sequence:

show sequence

ATCGGAGGCGGGGGCATGCGTGCCGTGACGTGAGCCCTGGAGCGCGGCTCCGTAAGGCTGCGTG
TCGTGGGCCGCGTTGCGCGGCGCGGCTCGTGCGGCTCGGCCCGGGCTGTGGCGGGAGCGAAGAT
GCCACAGCCCGTGCCCCGGAGCGCCGCTATCCCGGCCTGCGGGTGTCGCGGGAACTGAAAATGG
CCTTTGAGCTATGCTAGGTCTATGATGGGCAGTGTCACAATTCGATATTTCTGCTACGGGTGCC
TCTTTACATCTGCTACCTGGACAGTTCTGCTTTTCATTTATTTTAACTTCAGTGAAGTGACTCA
GCCCCTTAGGAATGTGCCCATCAAGGGGTCTGGGCCCCATGGGCCGTTTCCCAAAAAATTCTAC
CCACGTTTCACTCGAGGTCCAGGCCGAGTATTAGAGCCACAGTTCAAAGCAAACAGAATGGACG
ATTTGATGAATAATAACATTGAAGATCCAGATAAAGGCCTCTCAAAATCTTCCTCTGAGCTAGG
TATGATTTTCAATGAACGTGATCAGGAATTGAGAGACCTGGGCTACCAGAAACACGCCTTTAAT
ATGCTCATTAGTAACCGCTTGGGGTACCACAGAGACGTGCCAGACACCAGGAATGCAGAGTGTA
GGGGGAAGTCCTACCCAACTGACCTGCCAACTGCTAGCGTTGTTATCTGTTTCTACAACGAAGC
TTTTTCTGCCTTGTTGCGGACTGTGCACAGTGTTGTGGACCGCACGCCGGCACACCTTCTCCAT
GAGATCATCCTCGTGGATGACAGCAGTGACTTTGATGATTTAAAAGGAGAACTAGATGAGTACA
TCCAAAGATACCTGCCCGCAAAGGTCAAGGTCATAAGAAATATGAAGCGAGAGGGACTGATCCG
AGGAAGAATGATTGGAGCAGCCCACGCTACAGGAGAAGTCCTGGTCTTCCTGGACAGCCACTGC
GAAGTGAATGTGATGTGGTTACAGCCCCTTCTGGCCATCATCCTTGAAGACCCACATACAGTGG
TGTGCCCTGTGATTGACATCATCAGTGCTGACACACTCGCTTACAGTTCATCCCCAGTGGTTCG
GGGAGGTTTCAACTGGGGGCTGCACTTCAAGTGGGATCTAGTTCCTGTATCTGACCTGGGAGGC
GCAGACAGTGCCACAGCCCCAATACGGTCACCTACAATGGCCGGAGGACTGTTTGCCATGAACA
GACAGTATTTCAATGATCTTGGACAGTATGACAGTGGCATGGATATCTGGGGAGGAGAAAATCT
GGAAATCTCATTTCGGATCTGGATGTGCGGCGGCAAGCTCTTCATCATCCCTTGCTCAAGAGTC
GGGCACATTTTTCGGAAAAGGCGACCGTATGGATCTCCTGAAGGCCAGGACACCATGACACACA
ACTCGCTGAGACTGGCACATGTGTGGCTGGATGAGTACAAGGAGCAGTATTTTTCCTTAAGACC
TGATTTGAAGACCAAAAGCTTTGGGAATATCAGCGAGCGTGTTGAATTGAGGAAGAAACTGGGC
TGTCAGTCGTTCAAGTGGTATTTGGATAATGTTTACCCTGAGATGCAGGTGTCTGGTCCGAAGG
CCAGACTGCAGCAGCCCGTGTTCATCAACAGAGGACCGAAGCGCCCCAGAGTCCTGCTGCGTGG
AAGGCTCTACCACTTGCAGACCAACAAATGCCTGGTGGCCCAGGGCCGCTCCAGCCAGAAAGGA
GGCCTGGTGCTGCTTAAGGCCTGTGACTACGGAGACCCAACTCAGGTCTGGATTTACAACGAAG
AGCATGAATTGATCTTAAACAACCTCCTTTGCCTCGACATGTCAGAAACCCGCTCGTCAGACCC
TCCTCGACTCATGAAGTGCCACGGGTCAGGAGGGTCGCAGCAGTGGACCTTTGGGAAGAACAAT
CGGCTGTACCAAGTGTCGGTTGGGCAGTGCCTGAGAGTTGTGGACCAGATGGATCAGAAGGGCT
ACGTCGGCATGGCGATCTGTGATGGCTCCTCTTCCCAACAGTGGCGCCTAGAAGGCTAAAGGTG
GGCGGGCCCTGGCTGGGGGCAACTAATTCACCTGGTTTTGTCACGCCTGCCATAAGTCAAGGTG
CTTTGTAAAAGATGTTGTTGACTGCAAAAGGCAAGAACCTGCTGCAGGGCAGCCATCTCAGGGT
CTTCACTGGAATTGGTTAATTTCCGGGCTGCTGTTAAGGGATTCTTATTTATCCAGGGAAGACA
GAAAATAACTGTAAAGAGTTGGTCTACCTAGGATAAACCCAGGAAGTAGGTGTTTCTGTTCATA
TTCATGTTTCTCTTGTTCTCCCTTGGAGATGGAATGGTTTCTGTCTTAACAGGAACTTGTCACA
ATTTCCTTTCGTAGAGGACTTCATAAGAGATTTTTTTTCTACTTTTATCATGTTTAATGTTCCA
AATAGATTTTAAAAACTGGTTGAGTGCATATTACTTTTAGCTTCAGAAGATAACATGTATATTT
AAGAGGCATCTAACTATTATAAATTATTTTGATGACTTACTAGGCTGTCTACATTAAATAAAGG
ATCTCTTTGATCATTTAACAAGGA

hide sequence

RefSeq Acc Id:

XM_006235923 ⟹ XP_006235985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	10,571,464 - 10,595,184 (-)	NCBI
mRatBN7.2	4	9,837,629 - 9,861,368 (-)	NCBI
Rnor_6.0	4	6,297,255 - 6,321,369 (-)	NCBI
Rnor_5.0	4	6,318,181 - 6,351,691 (-)	NCBI

Sequence:

show sequence

AAAAACAAAACAAAACAAAAAACAAAACTGTCCAAGCAAGTAGTTATTGTTAACACAAGGCAAT
GATGAACATTTGGGTTTGAGAAGATGGAAGGATCCCTCTGTTCTGGGGTCTGTCTTATGCTTCT
AAGGGGTGAAGGTCTCTGGGTGAGGTCTTTATAACCTTGCTTATATTGTGGATACATTGTTTAT
TGAGATGCTGTCAGCTCACATCTGGAATTACGGTTCTGTTTACAGATGTTCAGCTTCTCATTTT
CCAACCACTTTCTTCAGCACTCGCTCAGCCTCTTAGGCACCTTGAATCACCAGTCTGGTCACAG
GTTTATGCTAGTTCTCACCTCACCTTTTTGCCTGGCTTTATTTTGTGATCTTTCCACTATAATG
ATCGTGTTCTGTGTACTTTGCTCACTTGCTCCTCCTCTGAAAGCAGCCACCAAACCAATGAAAG
AAATGCAGAGTCAAACTAACGTTCTTACGGCTGAGCCGGTCATTCCTGCAACACTGATATCTGG
TTGTGACTGTTTTTGCTTTATTAACCATTTACGTTTTTCACTGAAAAGTTTTTCACTGATTGTT
TGGCTTGGCATTAATTGGCCTTATGTATCTGCTTTGACCTTCCTTGACATTCGGCCGTGGACAT
TGAAGCCAGTAGAAGAAATAACAAACAAAGGGAACTGAAAATGGCCTTTGAGCTATGCTAGGTC
TATGATGGGCAGTGTCACAATTCGATATTTCTGCTACGGGTGCCTCTTTACATCTGCTACCTGG
ACAGTTCTGCTTTTCATTTATTTTAACTTCAGTGAAGTGACTCAGCCCCTTAGGAATGTGCCCA
TCAAGGGGTCTGGGCCCCATGGGCCGTTTCCCAAAAAATTCTACCCACGTTTCACTCGAGGTCC
AGGCCGAGTATTAGAGCCACAGTTCAAAGCAAACAGAATGGACGATTTGATGAATAATAACATT
GAAGATCCAGATAAAGGCCTCTCAAAATCTTCCTCTGAGCTAGGTATGATTTTCAATGAACGTG
ATCAGGAATTGAGAGACCTGGGCTACCAGAAACACGCCTTTAATATGCTCATTAGTAACCGCTT
GGGGTACCACAGAGACGTGCCAGACACCAGGAATGCAGAGTGTAGGGGGAAGTCCTACCCAACT
GACCTGCCAACTGCTAGCGTTGTTATCTGTTTCTACAACGAAGCTTTTTCTGCCTTGTTGCGGA
CTGTGCACAGTGTTGTGGACCGCACGCCGGCACACCTTCTCCATGAGATCATCCTCGTGGATGA
CAGCAGTGACTTTGATGATTTAAAAGGAGAACTAGATGAGTACATCCAAAGATACCTGCCCGCA
AAGGTCAAGGTCATAAGAAATATGAAGCGAGAGGGACTGATCCGAGGAAGAATGATTGGAGCAG
CCCACGCTACAGGAGAAGTCCTGGTCTTCCTGGACAGCCACTGCGAAGTGAATGTGATGTGGTT
ACAGCCCCTTCTGGCCATCATCCTTGAAGACCCACATACAGTGGTGTGCCCTGTGATTGACATC
ATCAGTGCTGACACACTCGCTTACAGTTCATCCCCAGTGGTTCGGGGAGGTTTCAACTGGGGGC
TGCACTTCAAGTGGGATCTAGTTCCTGTATCTGACCTGGGAGGCGCAGACAGTGCCACAGCCCC
AATACGGTCACCTACAATGGCCGGAGGACTGTTTGCCATGAACAGACAGTATTTCAATGATCTT
GGACAGTATGACAGTGGCATGGATATCTGGGGAGGAGAAAATCTGGAAATCTCATTTCGGATCT
GGATGTGCGGCGGCAAGCTCTTCATCATCCCTTGCTCAAGAGTCGGGCACATTTTTCGGAAAAG
GCGACCGTATGGATCTCCTGAAGGCCAGGACACCATGACACACAACTCGCTGAGACTGGCACAT
GTGTGGCTGGATGAGTACAAGGAGCAGTATTTTTCCTTAAGACCTGATTTGAAGACCAAAAGCT
TTGGGAATATCAGCGAGCGTGTTGAATTGAGGAAGAAACTGGGCTGTCAGTCGTTCAAGTGGTA
TTTGGATAATGTTTACCCTGAGATGCAGGTGTCTGGTCCGAAGGCCAGACTGCAGCAGCCCGTG
TTCATCAACAGAGGACCGAAGCGCCCCAGAGTCCTGCTGCGTGGAAGGCTCTACCACTTGCAGA
CCAACAAATGCCTGGTGGCCCAGGGCCGCTCCAGCCAGAAAGGAGGCCTGGTGCTGCTTAAGGC
CTGTGACTACGGAGACCCAACTCAGGTCTGGATTTACAACGAAGAGCATGAATTGATCTTAAAC
AACCTCCTTTGCCTCGACATGTCAGAAACCCGCTCGTCAGACCCTCCTCGACTCATGAAGTGCC
ACGGGTCAGGAGGGTCGCAGCAGTGGACCTTTGGGAAGAACAATCGGCTGTACCAAGTGTCGGT
TGGGCAGTGCCTGAGAGTTGTGGACCAGATGGATCAGAAGGGCTACGTCGGCATGGCGATCTGT
GATGGCTCCTCTTCCCAACAGTGGCGCCTAGAAGGCTAAAGGTGGGCGGGCCCTGGCTGGGGGC
AACTAATTCACCTGGTTTTGTCACGCCTGCCATAAGTCAAGGTGCTTTGTAAAAGATGTTGTTG
ACTGCAAAAGGCAAGAACCTGCTGCAGGGCAGCCATCTCAGGGTCTTCACTGGAATTGGTTAAT
TTCCGGGCTGCTGTTAAGGGATTCTTATTTATCCAGGGAAGACAGAAAATAACTGTAAAGAGTT
GGTCTACCTAGGATAAACCCAGGAAGTAGGTGTTTCTGTTCATATTCATGTTTCTCTTGTTCTC
CCTTGGAGATGGAATGGTTTCTGTCTTAACAGGAACTTGTCACAATTTCCTTTCGTAGAGGACT
TCATAAGAGATTTTTTTTCTACTTTTATCATGTTTAATGTTCCAAATAGATTTTAAAAACTGGT
TGAGTGCATATTACTTTTAGCTTCAGAAGATAACATGTATATTTAAGAGGCATCTAACTATTAT
AAATTATTTTGATGACTTACTAGGCTGTCTACATTAAATAAAGGATCTCTTTGATCATTTAACA
AGGA

hide sequence

RefSeq Acc Id:

XM_063285940 ⟹ XP_063142010

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	10,575,172 - 10,604,969 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258248	(Get FASTA)	NCBI Sequence Viewer
	NP_955425	(Get FASTA)	NCBI Sequence Viewer
	XP_006235985	(Get FASTA)	NCBI Sequence Viewer
	XP_063142010	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH62004	(Get FASTA)	NCBI Sequence Viewer
	EDL86386	(Get FASTA)	NCBI Sequence Viewer
	EDL86387	(Get FASTA)	NCBI Sequence Viewer
	EDL86388	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000011815.4
	ENSRNOP00000074237.2
GenBank Protein	Q6P6V1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_955425 ⟸ NM_199393

- UniProtKB:

Q6P6V1 (UniProtKB/Swiss-Prot), A0A0H2UHG8 (UniProtKB/TrEMBL), A6KJI6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMGSVTIRYFCYGCLFTSATWTVLLFIYFNFSEVTQPLRNVPIKGSGPHGPFPKKFYPRFTRGP
GRVLEPQFKANRMDDLMNNNIEDPDKGLSKSSSELGMIFNERDQELRDLGYQKHAFNMLISNRL
GYHRDVPDTRNAECRGKSYPTDLPTASVVICFYNEAFSALLRTVHSVVDRTPAHLLHEIILVDD
SSDFDDLKGELDEYIQRYLPAKVKVIRNMKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWL
QPLLAIILEDPHTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVPVSDLGGADSATAP
IRSPTMAGGLFAMNRQYFNDLGQYDSGMDIWGGENLEISFRIWMCGGKLFIIPCSRVGHIFRKR
RPYGSPEGQDTMTHNSLRLAHVWLDEYKEQYFSLRPDLKTKSFGNISERVELRKKLGCQSFKWY
LDNVYPEMQVSGPKARLQQPVFINRGPKRPRVLLRGRLYHLQTNKCLVAQGRSSQKGGLVLLKA
CDYGDPTQVWIYNEEHELILNNLLCLDMSETRSSDPPRLMKCHGSGGSQQWTFGKNNRLYQVSV
GQCLRVVDQMDQKGYVGMAICDGSSSQQWRLEG

hide sequence

RefSeq Acc Id:

NP_001258248 ⟸ NM_001271319

- UniProtKB:

Q6P6V1 (UniProtKB/Swiss-Prot), A0A0H2UHG8 (UniProtKB/TrEMBL), A6KJI6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MMGSVTIRYFCYGCLFTSATWTVLLFIYFNFSEVTQPLRNVPIKGSGPHGPFPKKFYPRFTRGP
GRVLEPQFKANRMDDLMNNNIEDPDKGLSKSSSELGMIFNERDQELRDLGYQKHAFNMLISNRL
GYHRDVPDTRNAECRGKSYPTDLPTASVVICFYNEAFSALLRTVHSVVDRTPAHLLHEIILVDD
SSDFDDLKGELDEYIQRYLPAKVKVIRNMKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWL
QPLLAIILEDPHTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVPVSDLGGADSATAP
IRSPTMAGGLFAMNRQYFNDLGQYDSGMDIWGGENLEISFRIWMCGGKLFIIPCSRVGHIFRKR
RPYGSPEGQDTMTHNSLRLAHVWLDEYKEQYFSLRPDLKTKSFGNISERVELRKKLGCQSFKWY
LDNVYPEMQVSGPKARLQQPVFINRGPKRPRVLLRGRLYHLQTNKCLVAQGRSSQKGGLVLLKA
CDYGDPTQVWIYNEEHELILNNLLCLDMSETRSSDPPRLMKCHGSGGSQQWTFGKNNRLYQVSV
GQCLRVVDQMDQKGYVGMAICDGSSSQQWRLEG

hide sequence

RefSeq Acc Id:	XP_006235985 ⟸ XM_006235923
- Peptide Label:	isoform X1
- UniProtKB:	Q6P6V1 (UniProtKB/Swiss-Prot), A0A0H2UHG8 (UniProtKB/TrEMBL), A6KJI6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMGSVTIRYFCYGCLFTSATWTVLLFIYFNFSEVTQPLRNVPIKGSGPHGPFPKKFYPRFTRGP GRVLEPQFKANRMDDLMNNNIEDPDKGLSKSSSELGMIFNERDQELRDLGYQKHAFNMLISNRL GYHRDVPDTRNAECRGKSYPTDLPTASVVICFYNEAFSALLRTVHSVVDRTPAHLLHEIILVDD SSDFDDLKGELDEYIQRYLPAKVKVIRNMKREGLIRGRMIGAAHATGEVLVFLDSHCEVNVMWL QPLLAIILEDPHTVVCPVIDIISADTLAYSSSPVVRGGFNWGLHFKWDLVPVSDLGGADSATAP IRSPTMAGGLFAMNRQYFNDLGQYDSGMDIWGGENLEISFRIWMCGGKLFIIPCSRVGHIFRKR RPYGSPEGQDTMTHNSLRLAHVWLDEYKEQYFSLRPDLKTKSFGNISERVELRKKLGCQSFKWY LDNVYPEMQVSGPKARLQQPVFINRGPKRPRVLLRGRLYHLQTNKCLVAQGRSSQKGGLVLLKA CDYGDPTQVWIYNEEHELILNNLLCLDMSETRSSDPPRLMKCHGSGGSQQWTFGKNNRLYQVSV GQCLRVVDQMDQKGYVGMAICDGSSSQQWRLEG hide sequence

Ensembl Acc Id:

ENSRNOP00000011815 ⟸ ENSRNOT00000011814

Ensembl Acc Id:

ENSRNOP00000074237 ⟸ ENSRNOT00000078077

RefSeq Acc Id:	XP_063142010 ⟸ XM_063285940
- Peptide Label:	isoform X2
- UniProtKB:	A6KJI5 (UniProtKB/TrEMBL)

Protein Domains

Glycosyltransferase 2-like Ricin B lectin Ricin B-type lectin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6P6V1-F1-model_v2	AlphaFold	Q6P6V1	1-608	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692781

Promoter ID:

EPDNEW_R3304

Type:

initiation region

Name:

Galnt11_1

Description:

polypeptide N-acetylgalactosaminyltransferase 11

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	6,330,712 - 6,330,772	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:735097	AgrOrtholog
BioCyc Gene	G2FUF-46084	BioCyc
BioCyc Pathway	PWY-7433 [mucin core 1 and core 2 O-glycosylation]	BioCyc
	PWY-7435 [mucin core 3 and core 4 O-glycosylation]	BioCyc
BioCyc Pathway Image	PWY-7433	BioCyc
	PWY-7435	BioCyc
Ensembl Genes	ENSRNOG00000008117	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000011814.8	UniProtKB/TrEMBL
	ENSRNOT00000078077.3	UniProtKB/TrEMBL
Gene3D-CATH	2.80.10.50	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5599809	IMAGE-MGC_LOAD
InterPro	GalNAc-T	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glyco_trans_2-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ricin_B-like_lectins	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ricin_B_lectin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:311952	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:72620	IMAGE-MGC_LOAD
NCBI Gene	311952	ENTREZGENE
PANTHER	N-ACETYLGALACTOSAMINYLTRANSFERASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 11	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Glycos_transf_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ricin_B_lectin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Galnt11	PhenoGen
PROSITE	RICIN_B_LECTIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008117	RatGTEx
SMART	RICIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50370	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF53448	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K7K0_RAT	UniProtKB/TrEMBL
	A0A0H2UHG8	ENTREZGENE, UniProtKB/TrEMBL
	A6KJI4_RAT	UniProtKB/TrEMBL
	A6KJI5	ENTREZGENE, UniProtKB/TrEMBL
	A6KJI6	ENTREZGENE, UniProtKB/TrEMBL
	GLT11_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-10	Galnt11	polypeptide N-acetylgalactosaminyltransferase 11	Galnt11	:polypeptide N-acetylgalactosaminyltransferase 11	Name changed	629549	APPROVED
2014-03-21	Galnt11	:polypeptide N-acetylgalactosaminyltransferase 11	Galnt11	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-17	Galnt11	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)	Galnt11	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-04	Galnt11	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	Galnt11	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Galnt11	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11)			Symbol and Name status set to approved	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)

BioCyc Pathways