LOC100909782 (uncharacterized LOC100909782)

Advanced Search (OLGA)

Gene: LOC100909782 (uncharacterized LOC100909782) Rattus norvegicus

Analyze

Symbol:

LOC100909782

Name:

uncharacterized LOC100909782

RGD ID:

6501875

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Previously known as:

LOC100909810; uncharacterized LOC100909810

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	2,447,742 - 2,460,177 (-)	NCBI		GRCr8
mRatBN7.2	18	2,173,074 - 2,187,558 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	2,174,748 - 2,187,554 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	18	2,353,747 - 2,364,858 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	18	2,373,376 - 2,384,472 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	18	2,052,363 - 2,063,114 (-)	NCBI		Celera
Cytogenetic Map	18	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Variants

Variants in LOC100909782
92 total Variants

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
8552968	Pigfal19	Plasma insulin-like growth factor 1 level QTL 19	11.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	18	1	25758124	Rat
9590248	Scort10	Serum corticosterone level QTL 10	19.71	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	1	25758124	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat

Markers in Region

RH131043

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	2,182,469 - 2,182,666 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	2,361,263 - 2,361,459	NCBI	Rnor6.0
Rnor_6.0	18	2,410,170 - 2,410,366	NCBI	Rnor6.0
Rnor_5.0	18	2,429,799 - 2,429,995	UniSTS	Rnor5.0
Rnor_5.0	18	2,380,892 - 2,381,088	UniSTS	Rnor5.0
RGSC_v3.4	18	2,497,559 - 2,497,755	UniSTS	RGSC3.4
Celera	18	2,059,522 - 2,059,718	UniSTS

RH131938

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	2,185,223 - 2,185,422 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	2,412,924 - 2,413,122	NCBI	Rnor6.0
Rnor_6.0	18	2,364,017 - 2,364,215	NCBI	Rnor6.0
Rnor_5.0	18	2,432,553 - 2,432,751	UniSTS	Rnor5.0
Rnor_5.0	18	2,383,646 - 2,383,844	UniSTS	Rnor5.0
RGSC_v3.4	18	2,500,313 - 2,500,511	UniSTS	RGSC3.4
Celera	18	2,062,275 - 2,062,473	UniSTS
RH 3.4 Map	18	11.2	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_005496132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010059773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010059774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_361202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_598245	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000101028

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	2,175,024 - 2,176,439 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	2,182,399 - 2,187,554 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107430

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	2,174,985 - 2,178,292 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117494

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	2,174,748 - 2,187,554 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119009

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	2,175,024 - 2,186,500 (-)	Ensembl

RefSeq Acc Id:

XR_005496132

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	2,455,220 - 2,459,892 (-)	NCBI
mRatBN7.2	18	2,182,432 - 2,187,206 (-)	NCBI

RefSeq Acc Id:

XR_010059773

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	2,447,742 - 2,460,177 (-)	NCBI

RefSeq Acc Id:

XR_010059774

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	2,455,220 - 2,460,177 (-)	NCBI

RefSeq Acc Id:

XR_361202

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	18	2,447,742 - 2,459,892 (-)	NCBI
mRatBN7.2	18	2,173,074 - 2,187,205 (-)	NCBI
Rnor_6.0	18	2,353,747 - 2,364,858 (-)	NCBI
Rnor_5.0	18	2,373,376 - 2,384,472 (-)	NCBI

Sequence:

show sequence

GCTGGACACTGGAAGGCTGCGGGAAGGGAATTGAACAGGAGAAACACTCTTATGGGAGTGGATT
TTTACACGCACACCCCACGTAAATTAAATCACTGTGGCTTCAGTGTGACTGCCTTTCTGAAAGG
CTGAAAGTAGAAAACTCTGGAATGGAGAGGCTGGCAACTGGAGCAGGATTCGAAGGCTTTAAAT
TTTAACCCGCGTTCGATCGAAAGTTACTACCACAAGAGACTGGCACCGGCCGGCCCAATTCCCA
CCATGGCTTCCAGAGGCTTGCTTTGGGGTTGTCCGAAAAGGGAGAGACGGACATTCCTGGACTA
ACAGACAGTGCTGTGCCTTGGTGATTGGGGCCCCAAAGAGCTCACAGAATCTGAAATCTCTGAG
GAATATCATGCCTACTAATATGAAAGCCCTAAGCAAAGAAGGTCAGAAGCCCAGGGCCAAAGCA
GTTAAGATTCATCATCCCATGTGTTCCGCAACACAAGCGCTCTGAAGGAAGAGTTCACTGACAC
AAACATGGAGTATATGACAAGCTGTTCATCAAGAGAGTGAAGAAGACAAAGAACCCAGGGAAGA
GATCGCCAGGAGTCACCAGTTGTCCTCACTGAGAGCCTATACCTCCAAGCCTAAGTCCAGGCAA
AAAATGTCTTACAGGATATGGTCTGAGTAGTCCAACCATGGATATGTCATACTGGAGCAGCTGA
GAACCTGGCAATAGTCCACAATGCTGGATGTCTCCACAGTCCCAACCTGACACCAGAGACATGG
AGGACTCCTGAAGAACTTCTGGTCCTTAAGTGCACACTGGAAGCCCAGAGAAGCTAGCTCTAAT
ATCAACCAAGAATGCAGCAGAACAGGAGATAGGCTTGCCCTCTCATCATCCAGGCTGCAACCAA
CCAAAAGACACTTTTGTGGATTTGTAGTCTTTGCTTTTTCTGGACAGGGTTTCTCTGTATATCC
CCAGCTGTCCTGGAACTCTCTATACAGGCCAGTCTGGCCTTGAACTTAGAGATCTTCCTACCTC
TGCCTCCCTGAGCACTGGAATTAAAGGCTTATGCCACCTCACCCTGCTAATACCGCCCACTTTT
AGGATACATCTTTCTGCTTCAAATGATCAGATCAAGAAGAGTCTTTTGAAAGAGCAGGAGGTTT
GTGTTATTCCAGATCTAATCTACTTGACAGGTAAGACTGGAGTTCCACCACTGGGACCCCACAG
CAGAAGGATGGACTCCCACAAGCTGTCCTCTGACCTCCATACAAACCTTATGGTGCATGTTTGA
GGATATACATTTGAGTGTTTGCGCATATACACAAAATGAATAGATGTATTAAAAAGGATTTTTA
AAACCTTA

hide sequence

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-8387	BioCyc
Ensembl Genes	ENSRNOG00000067687	Ensembl
NCBI Gene	LOC100909782	ENTREZGENE
PhenoGen	LOC100909782	PhenoGen
RatGTEx	ENSRNOG00000067687	RatGTEx
RNAcentral	URS0000CCE68C	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	LOC100909782	uncharacterized LOC100909782	LOC100909810	uncharacterized LOC100909810	Data merged from RGD:6501622	737654	PROVISIONAL
2012-07-05	LOC100909782	uncharacterized LOC100909782			Symbol and Name status set to provisional	70820	PROVISIONAL
2012-07-05	LOC100909810	uncharacterized LOC100909810			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message