Advanced Search (OLGA)

Gene: Zfand4 (zinc finger AN1-type containing 4) Rattus norvegicus

Analyze

Symbol:

Zfand4

Name:

zinc finger AN1-type containing 4

RGD ID:

628707

Description:

Predicted to enable zinc ion binding activity. Orthologous to human ZFAND4 (zinc finger AN1-type containing 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AN1, ubiquitin-like, homolog; AN1, ubiquitin-like, homolog (Xenopus laevis); AN1-type zinc finger and ubiquitin domain-containing protein 1; AN1-type zinc finger protein 4; Anubl1; Rsd7; testis-specific gene including a ubiquitin-likely domain; zinc finger, AN1-type domain 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZFAND4 (zinc finger AN1-type containing 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Zfand4 (zinc finger, AN1-type domain 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Zfand4 (zinc finger AN1-type containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZFAND4 (zinc finger AN1-type containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZFAND4 (zinc finger AN1-type containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zfand4 (zinc finger AN1-type containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZFAND4 (zinc finger AN1-type containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZFAND4 (zinc finger AN1-type containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Zfand4 (zinc finger AN1-type containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Zfand4 (zinc finger AN1-type containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZFAND4 (zinc finger AN1-type containing 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zfand4 (zinc finger, AN1-type domain 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zfand4 (zinc finger, AN1-type domain 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zfand4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	zfand4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	150,999,821 - 151,071,942 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	150,999,836 - 151,072,055 (+)	Ensembl				GRCr8
mRatBN7.2	4	149,327,339 - 149,399,495 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	149,327,412 - 149,399,487 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	155,556,084 - 155,626,746 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	151,340,118 - 151,410,781 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	149,963,020 - 150,033,685 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	148,198,810 - 148,270,273 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	148,199,102 - 148,268,405 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	214,144,903 - 214,216,253 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	152,403,931 - 152,476,350 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	138,212,199 - 138,282,557 (+)	NCBI		Celera
RGSC_v3.1	4	152,648,884 - 152,700,038 (+)	NCBI
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-D (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acrylamide (EXP)

aflatoxin B1 (EXP)

aldehydo-D-glucose (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

chloroprene (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

dibutyl phthalate (ISO)

doxorubicin (ISO)

ethanol (ISO)

fructose (ISO)

genistein (ISO)

gentamycin (EXP)

glucose (ISO)

inulin (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

Triptolide (ISO)

trovafloxacin (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

metal ion binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Information Derived from GenBank Report	RGD, Sept. 2003
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Zfand4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	150,999,821 - 151,071,942 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	150,999,836 - 151,072,055 (+)	Ensembl				GRCr8
mRatBN7.2	4	149,327,339 - 149,399,495 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	149,327,412 - 149,399,487 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	155,556,084 - 155,626,746 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	151,340,118 - 151,410,781 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	149,963,020 - 150,033,685 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	148,198,810 - 148,270,273 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	148,199,102 - 148,268,405 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	214,144,903 - 214,216,253 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	152,403,931 - 152,476,350 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	138,212,199 - 138,282,557 (+)	NCBI		Celera
RGSC_v3.1	4	152,648,884 - 152,700,038 (+)	NCBI
Cytogenetic Map	4	q42	NCBI

ZFAND4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	45,615,500 - 45,672,813 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	45,613,375 - 45,673,047 (-)	Ensembl			hg38	GRCh38
GRCh37	10	46,110,948 - 46,168,261 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	45,431,049 - 45,487,802 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	45,431,049 - 45,487,802	NCBI
Celera	10	42,108,967 - 42,166,179 (-)	NCBI		Celera
Cytogenetic Map	10	q11.22	NCBI
HuRef	10	42,634,888 - 42,692,337 (-)	NCBI		HuRef
CHM1_1	10	46,150,262 - 46,207,492 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	46,496,511 - 46,553,811 (-)	NCBI		T2T-CHM13v2.0

Zfand4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	116,241,046 - 116,310,384 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	116,241,183 - 116,307,263 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	116,263,594 - 116,333,423 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	116,264,222 - 116,330,302 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	116,214,253 - 116,279,645 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	116,229,854 - 116,295,246 (+)	NCBI		MGSCv36	mm8
Celera	6	118,102,481 - 118,167,748 (+)	NCBI		Celera
Cytogenetic Map	6	E3	NCBI
cM Map	6	53.77	NCBI

Zfand4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955546	2,679,821 - 2,716,122 (-)	Ensembl
ChiLan1.0	NW_004955546	2,666,182 - 2,716,317 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZFAND4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	58,438,269 - 58,499,153 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	58,443,598 - 58,504,482 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	42,697,963 - 42,758,825 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	45,877,008 - 45,937,549 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	45,877,008 - 45,937,539 (-)	Ensembl			panPan2	panpan1.1

ZFAND4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	1,926,028 - 1,987,995 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	1,926,067 - 1,987,995 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	2,160,220 - 2,221,723 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	2,103,743 - 2,165,920 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	2,110,340 - 2,170,796 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	1,900,471 - 1,962,313 (+)	NCBI		UMICH_Zoey_3.1
UU_Cfam_GSD_1.0	28	2,070,038 - 2,132,007 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Zfand4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	78,969,108 - 79,058,330 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936728	172,755 - 249,516 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936728	172,242 - 261,020 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZFAND4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	90,643,582 - 90,710,505 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	90,643,536 - 90,711,273 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	98,686,372 - 98,756,836 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZFAND4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	41,313,473 - 41,372,725 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	41,313,682 - 41,371,030 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666048	1,006,913 - 1,064,934 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zfand4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624966	388,278 - 434,528 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Zfand4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	30,406,326 - 30,468,193 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Zfand4
583 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	30
Count of miRNA genes:	29
Interacting mature miRNAs:	30
Transcripts:	ENSRNOT00000015742
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	107346299	152346299	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	149763204	169799698	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	150095743	159267220	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	117737142	152833657	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	111383604	156383604	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	108206096	153206096	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	111383604	156383604	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	148834094	168870974	Rat

Markers in Region

D4Rat83

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	149,368,097 - 149,368,240 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	148,238,860 - 148,239,000	NCBI	Rnor6.0
Rnor_5.0	4	214,184,861 - 214,185,001	UniSTS	Rnor5.0
RGSC_v3.4	4	152,446,157 - 152,446,399	RGD	RGSC3.4
RGSC_v3.4	4	152,446,207 - 152,446,347	UniSTS	RGSC3.4
Celera	4	138,253,074 - 138,253,214	UniSTS
RGSC_v3.1	4	152,691,048 - 152,691,188	RGD
RH 3.4 Map	4	951.8	RGD
RH 3.4 Map	4	951.8	UniSTS
RH 2.0 Map	4	943.1	RGD
FHH x ACI Map	4	87.92	RGD
Cytogenetic Map	4	q42	UniSTS

RH130293

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	150,998,060 - 150,998,218 (+)	Marker Load Pipeline
mRatBN7.2	4	149,325,608 - 149,325,767 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	148,197,120 - 148,197,278	NCBI	Rnor6.0
Rnor_5.0	4	214,143,121 - 214,143,279	UniSTS	Rnor5.0
RGSC_v3.4	4	152,402,062 - 152,402,220	UniSTS	RGSC3.4
Celera	4	138,210,330 - 138,210,488	UniSTS
RH 3.4 Map	4	969.12	UniSTS
Cytogenetic Map	4	q42	UniSTS

RH136774

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	149,399,046 - 149,399,128 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	148,269,830 - 148,269,911	NCBI	Rnor6.0
Rnor_5.0	4	214,215,810 - 214,215,891	UniSTS	Rnor5.0
RGSC_v3.4	4	152,477,777 - 152,477,858	UniSTS	RGSC3.4
Celera	4	138,283,984 - 138,284,065	UniSTS
RH 3.4 Map	4	968.3	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_173332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237142	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237143	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592499	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF315467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC162051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015742 ⟹ ENSRNOP00000015742

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	150,999,912 - 151,072,055 (+)	Ensembl
mRatBN7.2 Ensembl	4	149,327,412 - 149,399,487 (+)	Ensembl
Rnor_6.0 Ensembl	4	148,208,260 - 148,268,405 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083563 ⟹ ENSRNOP00000074111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	151,000,042 - 151,048,914 (+)	Ensembl
mRatBN7.2 Ensembl	4	149,327,591 - 149,376,466 (+)	Ensembl
Rnor_6.0 Ensembl	4	148,199,102 - 148,247,250 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099009 ⟹ ENSRNOP00000088081

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	150,999,912 - 151,069,970 (+)	Ensembl
mRatBN7.2 Ensembl	4	149,327,423 - 149,397,523 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000141253 ⟹ ENSRNOP00000110180

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	150,999,856 - 151,071,939 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000142625 ⟹ ENSRNOP00000112245

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	150,999,836 - 151,070,067 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000168161 ⟹ ENSRNOP00000104398

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	150,999,912 - 151,048,899 (+)	Ensembl

RefSeq Acc Id:

NM_173332 ⟹ NP_775454

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	150,999,856 - 151,071,942 (+)	NCBI
mRatBN7.2	4	149,327,405 - 149,399,495 (+)	NCBI
Rnor_6.0	4	148,198,989 - 148,268,403 (+)	NCBI
Rnor_5.0	4	214,144,903 - 214,216,253 (+)	NCBI
RGSC_v3.4	4	152,403,931 - 152,476,350 (+)	RGD
Celera	4	138,212,199 - 138,282,557 (+)	RGD

Sequence:

show sequence

CGACCACCGGAGGGCGAGCGGGTACAAAACTCAAACATGAACAACGATACATATTACCAATGTT
CAAAGCTGATTTGGGTACAATTGGAATACAGTTGCATACAACCTATTCCAGAAGAATTAGAAAA
GTCAAAGTAATGGATAACAGAAAAGAGCCTCCATTCTTCAATGAGGATAACGTGGGACCATTTT
ATTTCAAGCTTCCTTTCTATGACCCCATGGAGCTCTTCATCGAGACGCTGACCGGAACATGTTT
TGAACTAAGAGTTTCACCCTTTGAAGCTGTTATCTCTGTGAAAGGAAAAATTCAAAGATTGGAA
GGTATTCCCATCTGTCAGCAGCACTTAATTTGGAATAACATGGAGCTTGAAGATGATTATTGCT
TGAATGATTACAACATTTCCGAAGGTTGTACCTTGAAGCTGGTATTGGCTATGCGTGGCGGACC
AATAAGTACTAGAAAAGTTCCTGTGGAAGACCCACTCAGGGAGCTTGCTGAGTACATGGATTCC
AGTCGAGATGAGGTCTGGGAAAAGACCTCTTGCAACAAACAAGTTACATTTTTGGTATACCGGG
AAGGAGATCAACTAAATTTCTTTCGTGTAGTAGATAGGGGAGATGGCACTTTAACACCATTATC
AGAATCTTTAAGTGGTGGCTCTGTATATAATTTGTACACAGATGAGGATGAAGAGACTGAGCCT
TCTCCTTCTGGGCAACAAATCATTGAAAATTCAATAACTATGAACAAGATGAAGCTGCTGAAGG
CTAAGATGGAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGTTGTCAAGGTAAAACCTCGCCC
ACCCATAGCTCCTCGGCCATCCAGCAGTTCTGCAGCAGCAGCCCGGCACAGACTGTTAAGAGTC
CTCCCTCATATTGGGCAGTCTTGTTTGCCTTCTGGGAATGCATATGTCCCTGAAACATCCAGGA
ATGCAGGCACAAGCTCTGCAGCTCAGGCCCCTGCCGATAGACCGATGCCATCTCTCAGGAGTGA
GCTGCTGAAGGATGATGGTAACTGGGAGAGAAACATGCTGTCTCACTCCACGAGTAGCATCAGA
CTGCTTCCTCAGCTGACCCACCTAGACCTGGAAAACGACAAAGAGCTTCCAGATTCTGTTCTTC
ATCTTGGATCATCCCTGCCTCGGCGGACCAAGCACCTTTCAGGAAACTTGTCATCTAATAATGA
GGAGGATGTTGTCTTATTTCCACGGTCAGAAGAATGTGTAGCTGACGAGTTGCTCCTGCCAGAA
GTAGGTCCTTTTGCTCCATTTGCAGAAGGAAATGGTGCGGAGCAGAGCAGTGGTGTAGAAGGGT
TAGGGAAGGTAACACCAGAGTTCCCACTCACTAAAGGTGATGGAGGACTGAGGGCAGCAGAGCA
GCCTCTGAGCCATATGGCAAGAGTGCTGAGCAGTGACCCAGGAGACAATGCAGTTCTTAACCAC
CACCGAGAGCCAGGCTCTCACAAGAACAGACTCCTGTCACCTCTTCTCTGTGTTGCACCAGTGT
CACTACATAATTCTCTGGTGAAGCCACAGAGACAGTCGAAATGTTTTGAGTCAGGCAACCCCTC
AGCGTCTACATCACAAAACACCCTGCGGGAATTGGACATTCGAACCATAGCAGATTCTCCTTTC
TCTAGGACTGCTCGCTTCCGTGGTGTTAAAGTCGATTCGCCTGGGAAAAGATCTGATGTTATTT
CCAAAGTGGAAGCCCGAGATATTACAGAAATGGCTAACAAAGCTTCCAAAGAGCCCGTTGGTTG
TGTAAACAACAATGGCTTTTTGGCCTCACTGGCACGGAGTGCGAGCAGAGACAGTTTGCATAGC
ACGCGTGGAGTAGGCAGGCTTCGGTCCTCCGGAATTGGGTTGTCTACAAACTTCCAGCATTTTC
AGGATGAAAACATTAGGAAAAGTTCTCCCCAGTCAGAACCTACAGATTTTTTTCTATCTGCCCG
TGGTATTGGAATGAATGGAAGTAATGCAGCAGCAGGGAAGAGAATAGGAGAAAGTACTCACCAC
CTTCCACCTGTGAAAGCCCCTCTTCAAACAAAGAAGAAAGTAACGAAACATTGTTTTCTTTGTG
GAAAGAAAACAGGACTGGCCACTAGCTTTGAATGCAGGCAGGTGGTCAGCTGGAGAAGCTGAGA
GGCTTTCTCTGTGGGGACTCAGCATGGTATAATGCAGAATAAAACAAGTTTAAATGGCAAAAAA
AAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237141 ⟹ XP_006237203

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	150,999,961 - 151,071,937 (+)	NCBI
mRatBN7.2	4	149,327,522 - 149,399,490 (+)	NCBI
Rnor_6.0	4	148,199,039 - 148,270,273 (+)	NCBI
Rnor_5.0	4	214,144,903 - 214,216,253 (+)	NCBI

Sequence:

show sequence

GCGGCCGGGAGGGCGGGCGGCTGAAAGGCCTCCTGCTCCTTCGCTGCCCTGGCAGGCAGGAGAG
GTACGCCCGCCTCAATTGCAGCCTGGTCACACCCTCCACGCTTCTCTGCCTACGGACTCAGGAC
TCACAGACAAACCGGTCGCGCCCGTGGCTCCGGGTGCTGCTGACCGGACTTTGGGTCTGAGTGT
AGCAGCACACCGGCACTTGTGCATCAGTCCCAGGCTAGAGTGTGACTCCAATCTGAAGCTCGAT
TTTCACGCATCTGTAAAAGTTCAAGAGTCACCTTTTAAAAAGGCTGCAATATATTGTGGGTATA
TTTATGTTGGGGGAAAATTTTAAAAACTAACTCGTCGTGTGACTAAGTTTCTGTGGACGAGAAG
GAACCAAGTCCAAGGGTTCCCTGAGGGCTGAGGGGAAGGATTTAATGGAGACATCCCAGTTAGT
ACTTCCATGGTCTCTCTCTGCATTCTGTCTGGCTGTGGGTCTGTATTTGTTCCCAGCTGCTGCA
GAAGATAGCGTCTCTGATGATGGCTGAGCAAGGTACAAAACTCAAACATGAACAACGATACATA
TTACCAATGTTCAAAGCTGATTTGGGTACAATTGGAATACAGTTGCATACAACCTATTCCAGAA
GAATTAGAAAAGTCAAAGTAATGGATAACAGAAAAGAGCCTCCATTCTTCAATGAGGATAACGT
GGGACCATTTTATTTCAAGCTTCCTTTCTATGACCCCATGGAGCTCTTCATCGAGACGCTGACC
GGAACATGTTTTGAACTAAGAGTTTCACCCTTTGAAGCTGTTATCTCTGTGAAAGGAAAAATTC
AAAGATTGGAAGGTATTCCCATCTGTCAGCAGCACTTAATTTGGAATAACATGGAGCTTGAAGA
TGATTATTGCTTGAATGATTACAACATTTCCGAAGGTTGTACCTTGAAGCTGGTATTGGCTATG
CGTGGCGGACCAATAAGTACTAGAAAAGTTCCTGTGGAAGACCCACTCAGGGAGCTTGCTGAGT
ACATGGATTCCAGTCGAGATGAGGTCTGGGAAAAGACCTCTTGCAACAAACAAGTTACATTTTT
GGTATACCGGGAAGGAGATCAACTAAATTTCTTTCGTGTAGTAGATAGGGGAGATGGCACTTTA
ACACCATTATCAGAATCTTTAAGTGGTGGCTCTGTATATAATTTGTACACAGATGAGGATGAAG
AGACTGAGCCTTCTCCTTCTGGGCAACAAATCATTGAAAATTCAATAACTATGAACAAGATGAA
GCTGCTGAAGGCTAAGATGGAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGTTGTCAAGGTA
AAACCTCGCCCACCCATAGCTCCTCGGCCATCCAGCAGTTCTGCAGCAGCAGCCCGGCACAGAC
TGTTAAGAGTCCTCCCTCATATTGGGCAGTCTTGTTTGCCTTCTGGGAATGCATATGTCCCTGA
AACATCCAGGAATGCAGGCACAAGCTCTGCAGCTCAGGCCCCTGCCGATAGACCGATGCCATCT
CTCAGGAGTGAGCTGCTGAAGGATGATGGTAACTGGGAGAGAAACATGCTGTCTCACTCCACGA
GTAGCATCAGACTGCTTCCTCAGCTGACCCACCTAGACCTGGAAAACGACAAAGAGCTTCCAGA
TTCTGTTCTTCATCTTGGATCATCCCTGCCTCGGCGGACCAAGCACCTTTCAGGAAACTTGTCA
TCTAATAATGAGGAGGATGTTGTCTTATTTCCACGGTCAGAAGAATGTGTAGCTGACGAGTTGC
TCCTGCCAGAAGTAGGTCCTTTTGCTCCATTTGCAGAAGGAAATGGTGCGGAGCAGAGCAGTGG
TGTAGAAGGGTTAGGGAAGGTAACACCAGAGTTCCCACTCACTAAAGGTGATGGAGGACTGAGG
GCAGCAGAGCAGCCTCTGAGCCATATGGCAAGAGTGCTGAGCAGTGACCCAGGAGACAATGCAG
TTCTTAACCACCACCGAGAGCCAGGCTCTCACAAGAACAGACTCCTGTCACCTCTTCTCTGTGT
TGCACCAGTGTCACTACATAATTCTCTGGTGAAGCCACAGAGACAGTCGAAATGTTTTGAGTCA
GGCAACCCCTCAGCGTCTACATCACAAAACACCCTGCGGGAATTGGACATTCGAACCATAGCAG
ATTCTCCTTTCTCTAGGACTGCTCGCTTCCGTGGTGTTAAAGTCGATTCGCCTGGGAAAAGATC
TGATGTTATTTCCAAAGTGGAAGCCCGAGATATTACAGAAATGGCTAACAAAGCTTCCAAAGAG
CCCGTTGGTTGTGTAAACAACAATGGCTTTTTGGCCTCACTGGCACGGAGTGCGAGCAGAGACA
GTTTGCATAGCACGCGTGGAGTAGGCAGGCTTCGGTCCTCCGGAATTGGGTTGTCTACAAACTT
CCAGCATTTTCAGGATGAAAACATTAGGAAAAGTTCTCCCCAGTCAGAACCTACAGATTTTTTT
CTATCTGCCCGTGGTATTGGAATGAATGGAAGTAATGCAGCAGCAGGGAAGAGAATAGGAGAAA
GTACTCACCACCTTCCACCTGTGAAAGCCCCTCTTCAAACAAAGAAGAAAGTAACGAAACATTG
TTTTCTTTGTGGAAAGAAAACAGGACTGGCCACTAGCTTTGAATGCAGATGTGGAAACAACTTC
TGTGCATCTCATCGCTATGCAGAAGCTCATGGCTGCACTTATGACTACAAAAGTACAGGGAGGA
GATACTTGCAGGAGGCAAACCCTGTGGTCAACGCACCAAAACTTCCCAAAATCTAATTCTTCTC
TGCGCTTTACTGCTTTGCCTGAGGAATCGATTATATTGACAGAGAAATATTGTTTAGACTGCAT
TATTTTTGTTCGACTCCAAAAGATTTGCCAAATAACAAGCGCACACAGTGTGCACTGTTGGAGA
CTGAAAATGCCTACTGTATTGATGTCTTTATTCTTTGGTGAATCAAAAGTTTTAAAAGTAGTTT
TAAAAACTTTACACTATAATGATTTAGTTTTGTTATTGCATGTCTGTGTTAAGTATTTTCTATT
TGAGATTGGAATTATTTATTAGACAGATCTTCAAAGATGCACTTTAGGAAGTTACTATTGGCCG
CATAACTAGGCTTCCGTCTTGTACAGCAATGGGTGGCTTCGTAATGGCTCTGTTCAAACTGAGC
ACATTTTGCCCTTTTTTCTTCCTTTTCTTGTGGGGATGGGATAAATGGGATTTTTTTTTAAATC
CTGCACATGAAAGTTTATGAGGTTTACTAGCACGTTCTTTTTAAAAGAACATTTGTTTTTCCAG
TGTGATTTTTAACACATATATTTCTTCTATATTCAGATTGGCATTCATATATGTATCCATTCTG
TAGAACACATCATGTTAATATAGTATACATTTTTAAAAATACTACTTTTTAAATGGTAGTTTTA
AAATAACATTGTCTTCCTTGTTGCCATTGAAAACAGAAACCAACTTTTCAACTTTTCAAAAATG
GCTATAGATATTTTTAAAAGTCTCACAAACTTGGTTTATTTTTCTTACATATTGAGTGCTTTTA
CAGGGGAAATTCAAATAAATATTCAACTTCA

hide sequence

RefSeq Acc Id:

XM_039107167 ⟹ XP_038963095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	150,999,961 - 151,071,937 (+)	NCBI
mRatBN7.2	4	149,327,520 - 149,399,490 (+)	NCBI

RefSeq Acc Id:

XM_039107168 ⟹ XP_038963096

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	150,999,821 - 151,071,937 (+)	NCBI
mRatBN7.2	4	149,327,370 - 149,399,490 (+)	NCBI

RefSeq Acc Id:

XM_039107170 ⟹ XP_038963098

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	150,999,893 - 151,071,937 (+)	NCBI
mRatBN7.2	4	149,327,438 - 149,399,490 (+)	NCBI

RefSeq Acc Id:

XM_039107172 ⟹ XP_038963100

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	150,999,961 - 151,070,069 (+)	NCBI
mRatBN7.2	4	149,327,522 - 149,397,535 (+)	NCBI

RefSeq Acc Id:

XM_039107173 ⟹ XP_038963101

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	151,009,361 - 151,071,937 (+)	NCBI
mRatBN7.2	4	149,336,919 - 149,399,490 (+)	NCBI

RefSeq Acc Id:

XM_039107174 ⟹ XP_038963102

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	151,031,847 - 151,071,937 (+)	NCBI
mRatBN7.2	4	149,359,410 - 149,399,490 (+)	NCBI

RefSeq Acc Id:

XM_039107177 ⟹ XP_038963105

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	151,009,364 - 151,071,937 (+)	NCBI
mRatBN7.2	4	149,336,919 - 149,399,490 (+)	NCBI

RefSeq Acc Id:

XM_039107179 ⟹ XP_038963107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	150,999,961 - 151,059,446 (+)	NCBI
mRatBN7.2	4	149,327,522 - 149,386,895 (+)	NCBI

RefSeq Acc Id:

XM_063285657 ⟹ XP_063141727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	150,999,848 - 151,071,937 (+)	NCBI

RefSeq Acc Id:

XM_063285658 ⟹ XP_063141728

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	151,001,031 - 151,071,937 (+)	NCBI

RefSeq Acc Id:

XM_063285659 ⟹ XP_063141729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	150,999,840 - 151,071,937 (+)	NCBI

RefSeq Acc Id:

XM_063285660 ⟹ XP_063141730

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	150,999,961 - 151,071,937 (+)	NCBI

RefSeq Acc Id:

XM_063285661 ⟹ XP_063141731

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	151,009,364 - 151,071,937 (+)	NCBI

RefSeq Acc Id:

XM_063285662 ⟹ XP_063141732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	151,035,149 - 151,071,937 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_775454	(Get FASTA)	NCBI Sequence Viewer
	XP_006237203	(Get FASTA)	NCBI Sequence Viewer
	XP_038963095	(Get FASTA)	NCBI Sequence Viewer
	XP_038963096	(Get FASTA)	NCBI Sequence Viewer
	XP_038963098	(Get FASTA)	NCBI Sequence Viewer
	XP_038963100	(Get FASTA)	NCBI Sequence Viewer
	XP_038963101	(Get FASTA)	NCBI Sequence Viewer
	XP_038963102	(Get FASTA)	NCBI Sequence Viewer
	XP_038963105	(Get FASTA)	NCBI Sequence Viewer
	XP_038963107	(Get FASTA)	NCBI Sequence Viewer
	XP_063141727	(Get FASTA)	NCBI Sequence Viewer
	XP_063141728	(Get FASTA)	NCBI Sequence Viewer
	XP_063141729	(Get FASTA)	NCBI Sequence Viewer
	XP_063141730	(Get FASTA)	NCBI Sequence Viewer
	XP_063141731	(Get FASTA)	NCBI Sequence Viewer
	XP_063141732	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH78692	(Get FASTA)	NCBI Sequence Viewer
	AAI62051	(Get FASTA)	NCBI Sequence Viewer
	AAK11281	(Get FASTA)	NCBI Sequence Viewer
	EDM02126	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015742
	ENSRNOP00000015742.6
	ENSRNOP00000074111.1
	ENSRNOP00000088081.2
	ENSRNOP00000104398.1
	ENSRNOP00000110180
	ENSRNOP00000110180.1
	ENSRNOP00000112245
	ENSRNOP00000112245.1

RefSeq Acc Id:

NP_775454 ⟸ NM_173332

- UniProtKB:

B1WC93 (UniProtKB/TrEMBL), F7EY43 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFKADLGTIGIQLHTTYSRRIRKVKVMDNRKEPPFFNEDNVGPFYFKLPFYDPMELFIETLTGT
CFELRVSPFEAVISVKGKIQRLEGIPICQQHLIWNNMELEDDYCLNDYNISEGCTLKLVLAMRG
GPISTRKVPVEDPLRELAEYMDSSRDEVWEKTSCNKQVTFLVYREGDQLNFFRVVDRGDGTLTP
LSESLSGGSVYNLYTDEDEETEPSPSGQQIIENSITMNKMKLLKAKMENMNLSKKPKKVVKVKP
RPPIAPRPSSSSAAAARHRLLRVLPHIGQSCLPSGNAYVPETSRNAGTSSAAQAPADRPMPSLR
SELLKDDGNWERNMLSHSTSSIRLLPQLTHLDLENDKELPDSVLHLGSSLPRRTKHLSGNLSSN
NEEDVVLFPRSEECVADELLLPEVGPFAPFAEGNGAEQSSGVEGLGKVTPEFPLTKGDGGLRAA
EQPLSHMARVLSSDPGDNAVLNHHREPGSHKNRLLSPLLCVAPVSLHNSLVKPQRQSKCFESGN
PSASTSQNTLRELDIRTIADSPFSRTARFRGVKVDSPGKRSDVISKVEARDITEMANKASKEPV
GCVNNNGFLASLARSASRDSLHSTRGVGRLRSSGIGLSTNFQHFQDENIRKSSPQSEPTDFFLS
ARGIGMNGSNAAAGKRIGESTHHLPPVKAPLQTKKKVTKHCFLCGKKTGLATSFECRQVVSWRS

hide sequence

RefSeq Acc Id:	XP_006237203 ⟸ XM_006237141
- Peptide Label:	isoform X3
- UniProtKB:	B1WC93 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMAEQGTKLKHEQRYILPMFKADLGTIGIQLHTTYSRRIRKVKVMDNRKEPPFFNEDNVGPFYF KLPFYDPMELFIETLTGTCFELRVSPFEAVISVKGKIQRLEGIPICQQHLIWNNMELEDDYCLN DYNISEGCTLKLVLAMRGGPISTRKVPVEDPLRELAEYMDSSRDEVWEKTSCNKQVTFLVYREG DQLNFFRVVDRGDGTLTPLSESLSGGSVYNLYTDEDEETEPSPSGQQIIENSITMNKMKLLKAK MENMNLSKKPKKVVKVKPRPPIAPRPSSSSAAAARHRLLRVLPHIGQSCLPSGNAYVPETSRNA GTSSAAQAPADRPMPSLRSELLKDDGNWERNMLSHSTSSIRLLPQLTHLDLENDKELPDSVLHL GSSLPRRTKHLSGNLSSNNEEDVVLFPRSEECVADELLLPEVGPFAPFAEGNGAEQSSGVEGLG KVTPEFPLTKGDGGLRAAEQPLSHMARVLSSDPGDNAVLNHHREPGSHKNRLLSPLLCVAPVSL HNSLVKPQRQSKCFESGNPSASTSQNTLRELDIRTIADSPFSRTARFRGVKVDSPGKRSDVISK VEARDITEMANKASKEPVGCVNNNGFLASLARSASRDSLHSTRGVGRLRSSGIGLSTNFQHFQD ENIRKSSPQSEPTDFFLSARGIGMNGSNAAAGKRIGESTHHLPPVKAPLQTKKKVTKHCFLCGK KTGLATSFECRCGNNFCASHRYAEAHGCTYDYKSTGRRYLQEANPVVNAPKLPKI hide sequence

Ensembl Acc Id:

ENSRNOP00000074111 ⟸ ENSRNOT00000083563

Ensembl Acc Id:

ENSRNOP00000015742 ⟸ ENSRNOT00000015742

RefSeq Acc Id:	XP_038963096 ⟸ XM_039107168
- Peptide Label:	isoform X2
- UniProtKB:	B1WC93 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963098 ⟸ XM_039107170
- Peptide Label:	isoform X2
- UniProtKB:	B1WC93 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963095 ⟸ XM_039107167
- Peptide Label:	isoform X1
- UniProtKB:	B1WC93 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963100 ⟸ XM_039107172
- Peptide Label:	isoform X4
- UniProtKB:	B1WC93 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963107 ⟸ XM_039107179
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_038963101 ⟸ XM_039107173
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038963105 ⟸ XM_039107177
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038963102 ⟸ XM_039107174
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000088081 ⟸ ENSRNOT00000099009

RefSeq Acc Id:	XP_063141729 ⟸ XM_063285659
- Peptide Label:	isoform X3
- UniProtKB:	B1WC93 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141727 ⟸ XM_063285657
- Peptide Label:	isoform X1
- UniProtKB:	B1WC93 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141730 ⟸ XM_063285660
- Peptide Label:	isoform X3
- UniProtKB:	B1WC93 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141728 ⟸ XM_063285658
- Peptide Label:	isoform X1
- UniProtKB:	B1WC93 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141731 ⟸ XM_063285661
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063141732 ⟸ XM_063285662
- Peptide Label:	isoform X7

Ensembl Acc Id:

ENSRNOP00000110180 ⟸ ENSRNOT00000141253

Ensembl Acc Id:

ENSRNOP00000112245 ⟸ ENSRNOT00000142625

Ensembl Acc Id:

ENSRNOP00000104398 ⟸ ENSRNOT00000168161

Protein Domains

Ubiquitin-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B1WC93-F1-model_v2	AlphaFold	B1WC93	1-704	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:628707	AgrOrtholog
BioCyc Gene	G2FUF-43300	BioCyc
Ensembl Genes	ENSRNOG00000011791	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015742	ENTREZGENE
	ENSRNOT00000015742.8	UniProtKB/TrEMBL
	ENSRNOT00000083563.3	UniProtKB/TrEMBL
	ENSRNOT00000099009.2	UniProtKB/TrEMBL
	ENSRNOT00000141253	ENTREZGENE
	ENSRNOT00000141253.1	UniProtKB/TrEMBL
	ENSRNOT00000142625	ENTREZGENE
	ENSRNOT00000142625.1	UniProtKB/TrEMBL
	ENSRNOT00000168161.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.1110.10	UniProtKB/TrEMBL
	Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7112072	IMAGE-MGC_LOAD
InterPro	AN1-like_Znf	UniProtKB/TrEMBL
	AN1-type_zinc_finger	UniProtKB/TrEMBL
	Ubiquitin	UniProtKB/TrEMBL
	Ubiquitin-rel_dom	UniProtKB/TrEMBL
	Ubiquitin_subgr	UniProtKB/TrEMBL
	Znf_AN1	UniProtKB/TrEMBL
KEGG Report	rno:286998	UniProtKB/TrEMBL
MGC_CLONE	MGC:188031	IMAGE-MGC_LOAD
NCBI Gene	286998	ENTREZGENE
PANTHER	AN1-TYPE ZINC FINGER PROTEIN 4	UniProtKB/TrEMBL
	AN1-TYPE ZINC FINGER PROTEIN 4	UniProtKB/TrEMBL
Pfam	ubiquitin	UniProtKB/TrEMBL
	zf-AN1	UniProtKB/TrEMBL
PhenoGen	Zfand4	PhenoGen
PRINTS	UBIQUITIN	UniProtKB/TrEMBL
PROSITE	UBIQUITIN_2	UniProtKB/TrEMBL
	ZF_AN1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011791	RatGTEx
SMART	UBQ	UniProtKB/TrEMBL
	ZnF_AN1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF118310	UniProtKB/TrEMBL
	SSF54236	UniProtKB/TrEMBL
UniProt	A0A8I6GGQ2_RAT	UniProtKB/TrEMBL
	A0ABK0LMV0_RAT	UniProtKB/TrEMBL
	A0ABK0LR66_RAT	UniProtKB/TrEMBL
	B1WC93	ENTREZGENE, UniProtKB/TrEMBL
	F7EY43	ENTREZGENE, UniProtKB/TrEMBL
	Q99PD3_RAT	UniProtKB/TrEMBL
UniProt Secondary	A6IL13	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Zfand4	zinc finger AN1-type containing 4	Zfand4	zinc finger, AN1-type domain 4	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-13	Zfand4	zinc finger, AN1-type domain 4	Anubl1	AN1, ubiquitin-like, homolog (Xenopus laevis)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-25	Anubl1	AN1, ubiquitin-like, homolog (Xenopus laevis)	Anubl1	testis-specific gene including a ubiquitin-likely domain	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Anubl1	testis-specific gene including a ubiquitin-likely domain	Rsd7		Symbol and Name updated	1299863	APPROVED
2003-02-27	Rsd7	testis-specific gene including a ubiquitin-likely domain			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message