Mir3543 (microRNA 3543) - Rat Genome Database

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Gene: Mir3543 (microRNA 3543) Rattus norvegicus
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Symbol: Mir3543
Name: microRNA 3543
RGD ID: 4888615
Description: Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex; INTERACTS WITH ozone.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-3543-2; Mir3543-1; rno-mir-3543; rno-mir-3543-1
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86134,330,369 - 134,330,483 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.26128,548,130 - 128,548,244 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6128,548,130 - 128,548,244 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6128,688,201 - 128,688,315 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06141,857,854 - 141,857,968 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06128,345,629 - 128,345,743 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd6135,509,405 - 135,509,519 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive6134,946,625 - 134,946,739 (-)NCBILyon_Normotensive
Lyon_Hypertensive6132,729,055 - 132,729,169 (-)NCBILyon_Hypertensive
F344_StmMcwi6131,855,654 - 131,855,768 (-)NCBIF344_StmMcwi
Rnor_6.06133,715,345 - 133,715,459 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6133,715,345 - 133,715,459 (-)Ensemblrn6Rnor6.0
Rnor_5.06142,877,522 - 142,877,636 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera6126,096,569 - 126,096,683 (-)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
ozone  (EXP)

References
Additional References at PubMed
PMID:16381832   PMID:20403161  


Genomics

Variants

.
Variants in Mir3543
3 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6131392689143944780Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NR_037317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000062197
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl6133,715,345 - 133,715,459 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107185
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6128,548,130 - 128,548,244 (-)Ensembl
RefSeq Acc Id: NR_037317
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86134,330,369 - 134,330,483 (-)NCBI
mRatBN7.26128,548,130 - 128,548,244 (-)NCBI
Dahl_SR_JrHsd6135,509,405 - 135,509,519 (-)NCBI
Lyon_Normotensive6134,946,625 - 134,946,739 (-)NCBI
Lyon_Hypertensive6132,729,055 - 132,729,169 (-)NCBI
F344_StmMcwi6131,855,654 - 131,855,768 (-)NCBI
Rnor_6.06133,715,345 - 133,715,459 (-)NCBI
Rnor_5.06142,877,522 - 142,877,636 (-)NCBI
Celera6126,096,569 - 126,096,683 (-)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-36181 BioCyc
Ensembl Genes ENSRNOG00000047142 Ensembl
  ENSRNOG00000064775 Ensembl
miRBase MI0015397 ENTREZGENE
NCBI Gene 100526563 ENTREZGENE
PhenoGen Mir3543 PhenoGen
RatGTEx ENSRNOG00000047142 RatGTEx
  ENSRNOG00000064775 RatGTEx
RNAcentral URS000075D70F RNACentral
  URS000075E123 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Mir3543  microRNA 3543  Mir3543  microRNA mir-3543-2  Data merged from RGD:149736479 737654 PROVISIONAL
2021-08-09 Mir3543  microRNA mir-3543-2      Symbol and Name status set to provisional 45752 PROVISIONAL
2015-04-09 Mir3543  microRNA 3543  Mir3543  microRNA mir-3543  Name updated 61478 APPROVED
2010-11-23 Mir3543  microRNA mir-3543      Symbol and Name status set to provisional 70820 PROVISIONAL