LOC120100104 (sperm motility kinase Y-like) - Rat Genome Database

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Gene: LOC120100104 (sperm motility kinase Y-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120100104 (Ensembl: LOC102556715)
Name: sperm motility kinase Y-like (Ensembl:uncharacterized LOC102556715)
RGD ID: 41297741
Description: Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction. Predicted to be active in cytoplasm.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein LOC120100104
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8158,218,426 - 58,226,719 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.2154,082,413 - 54,992,728 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl154,081,437 - 54,090,776 (+)EnsemblmRatBN7.2
Cytogenetic Map1q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Variants

.
Variants in LOC120100104
73 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat


Expression

RNA-SEQ Expression

adipose tissue
appendage
circulatory system
ectoderm
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
1 1 67 39 1 93 78 11 33 16 17 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000104925   ⟹   ENSRNOP00000090351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl154,081,437 - 54,090,776 (+)Ensembl
RefSeq Acc Id: XM_063277001   ⟹   XP_063133071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,222,505 - 58,226,719 (+)NCBI
RefSeq Acc Id: XR_005499844
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,218,426 - 58,226,719 (+)NCBI
mRatBN7.2154,082,414 - 54,091,918 (+)NCBI
RefSeq Acc Id: XR_005499845
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,218,426 - 58,226,719 (+)NCBI
mRatBN7.2154,082,414 - 54,091,918 (+)NCBI
RefSeq Acc Id: XR_010059411
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,218,426 - 58,226,719 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063133071 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000105200.1
  ENSRNOP00000112274.1
Ensembl Acc Id: ENSRNOP00000090351   ⟸   ENSRNOT00000104925
RefSeq Acc Id: XP_063133071   ⟸   XM_063277001

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41297741 AgrOrtholog
BioCyc Gene G2FUF-61407 BioCyc
Ensembl Genes ENSRNOG00000065613 Ensembl
  ENSRNOG00000083056 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000121814.1 UniProtKB/TrEMBL
  ENSRNOT00000136082 ENTREZGENE
  ENSRNOT00000136082.1 UniProtKB/TrEMBL
NCBI Gene LOC120100104 ENTREZGENE
PhenoGen LOC120100104 PhenoGen
RatGTEx ENSRNOG00000065613 RatGTEx
  ENSRNOG00000083056 RatGTEx
UniProt A0ABK0LI72_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120100104  sperm motility kinase Y-like      Symbol and Name status set to provisional 70820 PROVISIONAL