LOC120098497 (uncharacterized LOC120098497) - Rat Genome Database
Welcome
Sign In
Message Center
1 Messages
Go to Message Center
Watched Genes
Watched Ontology Terms
×
Save List to My RGD
Create Name:
Description:
You must be logged in to use this feature
Subscribe to Updates
Select categories you would like to watch. Updates to this gene will be sent to Sign In
Analyze List
×
Gene Annotator (Functional Annotation)
unavailable
Gene Annotator (Annotation Distribution)
unavailable
Variant Visualizer (Genomic Variants)
unavailable
InterViewer (Protein-Protein Interactions)
unavailable
Gviewer (Genome Viewer)
unavailable
Variant Visualizer (Damaging Variants)
unavailable
Gene Annotator (Annotation Comparison)
unavailable
OLGA (Gene List Generator)
unavailable
Excel (Download)
MOET (Multi-Ontology Enrichement)
unavailable
GOLF (Gene-Ortholog Location Finder)
unavailable
x
Send Message
x
Send us a Message
Your email
Message
Send
Submit Data
|
Help
|
Video Tutorials
|
News
|
Publications
|
Download
|
REST API
|
Citing RGD
|
Contact
Home
Search RGD
Grant Resources
Citing RGD
About Us
Contact Us
Data
Genes
Variants
Community Projects
QTLs
Strains
Markers
Genome Information
Ontologies
Cell Lines
References
Download
Submit Data
Analysis & Visualization
OntoMate (Literature Search)
JBrowse (Genome Browser)
Synteny Browser (VCMap)
Variant Visualizer
Multi-Ontology Enrichment (MOET)
Gene-Ortholog Location Finder (GOLF)
InterViewer (Protein-Protein Interactions)
PhenoMiner (Quatitative Phenotypes)
Gene Annotator
OLGA (Gene List Generator)
AllianceMine
GViewer (Genome Viewer)
Diseases
Aging & Age-Related Disease
Cancer & Neoplastic Disease
Cardiovascular Disease
Coronavirus Disease
Developmental Disease
Diabetes
Hematologic Disease
Immune & Inflammatory Disease
Infectious Disease
Liver Disease
Neurological Disease
Obesity & Metabolic Syndrome
Renal Disease
Respiratory Disease
Sensory Organ Disease
Phenotypes & Models
Find Models
Genetic Models
Autism Models
Rat PhenoMiner (Quantitative Phenotypes)
Chinchilla PhenoMiner
Expected Ranges (Quantitative Phenotype)
PhenoMiner Term Comparison
Hybrid Rat Diversity Panel
Phenotypes
Phenotypes in Other Animal Models
Animal Husbandry
Strain Medical Records
Phylogenetics
Strain Availability
Calendar
Rats 101
Submissions
Photo Archive
Pathways
Community
Rat Community Forum
Directory of Rat Laboratories
Video Tutorials
News
RGD Publications
RGD Presentations Archive
Nomenclature Guidelines
Resource Links
Laboratory Resources
Employment Resources
Advanced Search (OLGA)
Summary
References
Genomics
Variants
QTLs in Region (GRCr8)
Expression
RNA-SEQ Expression
Sequence
Nucleotide Sequences
Reference Sequences
Protein Sequences
Reference Protein Sequences
Additional Information
External Database Links
Nomenclature History
Gene: LOC120098497 (uncharacterized LOC120098497) Rattus norvegicus
Subscribe to Updates
Analyze
General
Array IDs
Symbol:
LOC120098497
Name:
uncharacterized LOC120098497
RGD ID:
41041632
Description:
Type:
protein-coding
RefSeq Status:
MODEL
Previously known as:
NEDD8-activating enzyme E1 regulatory subunit-like
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly
Chr
Position (strand)
Source
Genome Browsers
JBrowse
NCBI
UCSC
Ensembl
GRCr8
19
208,628 - 279,173 (+)
NCBI
GRCr8
mRatBN7.2
19
230,203 - 269,086 (+)
NCBI
mRatBN7.2
mRatBN7.2
Cytogenetic Map
19
p14
NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Annotation
Click to see Annotation Summary View
References
Genomics
.
Variants
.
Variants in LOC120098497
225 total Variants
QTLs in Region (GRCr8)
1 to 9 of 9 rows
10
20
30
40
100
All Rows
The following
QTLs
overlap with this region.
Full Report
CSV
TAB
Printer
Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549847
Bss8
Bone structure and strength QTL 8
4
lumbar vertebra strength trait (VT:0010574)
vertebra ultimate force (CMO:0001678)
19
1
31963836
Rat
8552935
Pigfal10
Plasma insulin-like growth factor 1 level QTL 10
5.7
blood insulin-like growth factor amount (VT:0010479)
plasma insulin-like growth factor 1 level (CMO:0001299)
19
1
36824771
Rat
7411590
Foco7
Food consumption QTL 7
6.8
0.001
eating behavior trait (VT:0001431)
feed conversion ratio (CMO:0001312)
19
1
24688055
Rat
631678
Cm9
Cardiac mass QTL 9
4.27
0.0001
aorta mass (VT:0002845)
aorta weight (CMO:0000076)
19
1
28982497
Rat
631681
Cm12
Cardiac mass QTL 12
3.33
0.00053
heart left ventricle mass (VT:0007031)
heart left ventricle weight to body weight ratio (CMO:0000530)
19
1
28982497
Rat
9590298
Uminl5
Urine mineral level QTL 5
3.59
0.001
urine mineral amount (VT:0015086)
urine electrolyte level (CMO:0000593)
19
1
36824771
Rat
9590250
Scort11
Serum corticosterone level QTL 11
23.45
0.001
blood corticosterone amount (VT:0005345)
plasma corticosterone level (CMO:0001173)
19
1
36824771
Rat
9590090
Insglur8
Insulin/glucose ratio QTL 8
10.81
0.001
blood insulin amount (VT:0001560)
calculated plasma insulin level (CMO:0002170)
19
1
36824771
Rat
10054132
Srcrt9
Stress Responsive Cort QTL 9
2.87
0.0017
blood corticosterone amount (VT:0005345)
plasma corticosterone level (CMO:0001173)
19
1
27355345
Rat
1 to 9 of 9 rows
10
20
30
40
100
All Rows
Expression
RNA-SEQ Expression
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
Download All Expressed Objects for this Gene
Too many to show, limit is 500. Download them if you would like to view them all.
Strain/Cell Line
(Click to sort Ascending)
Sex
(Click to sort Ascending)
Age
(Click to sort Ascending)
Tissue
(Click to sort Ascending)
Geo Sample Id
(Click to sort Ascending)
Value
(Click to sort Ascending)
Unit
(Click to sort Ascending)
Assembly
(Click to sort Ascending)
Reference
(Click to sort Ascending)
Sequence
Nucleotide Sequences
1 to 6 of 6 rows
3
5
10
20
30
100
All Rows
RefSeq Transcripts
XM_039098084
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
XM_039098085
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
XM_063278752
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
XM_063278753
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
XM_063278754
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
GenBank Nucleotide
JAXUCZ010000019
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
1 to 6 of 6 rows
3
5
10
20
30
100
All Rows
Reference Sequences
0 to 0 of 0 rows
3
5
10
20
100
All Rows
RefSeq Acc Id:
XM_039098084 ⟹ XP_038954012
Type:
CODING
Position:
Rat Assembly
Chr
Position (strand)
Source
GRCr8
19
208,628 - 229,292 (+)
NCBI
RefSeq Acc Id:
XM_039098085 ⟹ XP_038954013
Type:
CODING
Position:
Rat Assembly
Chr
Position (strand)
Source
GRCr8
19
208,628 - 229,292 (+)
NCBI
RefSeq Acc Id:
XM_063278752 ⟹ XP_063134822
Type:
CODING
Position:
Rat Assembly
Chr
Position (strand)
Source
GRCr8
19
214,388 - 279,173 (+)
NCBI
RefSeq Acc Id:
XM_063278753 ⟹ XP_063134823
Type:
CODING
Position:
Rat Assembly
Chr
Position (strand)
Source
GRCr8
19
214,388 - 279,173 (+)
NCBI
RefSeq Acc Id:
XM_063278754 ⟹ XP_063134824
Type:
CODING
Position:
Rat Assembly
Chr
Position (strand)
Source
GRCr8
19
208,628 - 229,385 (+)
NCBI
0 to 0 of 0 rows
3
5
10
20
100
All Rows
Protein Sequences
1 to 5 of 5 rows
10
20
30
40
100
All Rows
Protein RefSeqs
XP_038954012
(Get FASTA)
NCBI Sequence Viewer
XP_038954013
(Get FASTA)
NCBI Sequence Viewer
XP_063134822
(Get FASTA)
NCBI Sequence Viewer
XP_063134823
(Get FASTA)
NCBI Sequence Viewer
XP_063134824
(Get FASTA)
NCBI Sequence Viewer
1 to 5 of 5 rows
10
20
30
40
100
All Rows
Reference Protein Sequences
1 to 5 of 5 rows
3
5
10
20
100
All Rows
1 to 5 of 5 rows
3
5
10
20
100
All Rows
RefSeq Acc Id:
XP_063134824 ⟸ XM_063278754
- Peptide Label:
isoform X2
RefSeq Acc Id:
XP_038954012 ⟸ XM_039098084
- Peptide Label:
isoform X2
RefSeq Acc Id:
XP_038954013 ⟸ XM_039098085
- Peptide Label:
isoform X3
RefSeq Acc Id:
XP_063134822 ⟸ XM_063278752
- Peptide Label:
isoform X1
RefSeq Acc Id:
XP_063134823 ⟸ XM_063278753
- Peptide Label:
isoform X1
Additional Information
External Database Links
1 to 3 of 3 rows
3
5
10
20
40
100
All Rows
Database
Acc Id
Source(s)
BioCyc Gene
G2FUF-6666
BioCyc
NCBI Gene
LOC120098497
ENTREZGENE
PhenoGen
LOC120098497
PhenoGen
1 to 3 of 3 rows
3
5
10
20
40
100
All Rows
Nomenclature History
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2021-01-27
LOC120098497
uncharacterized LOC120098497
Symbol and Name status set to provisional
70820
PROVISIONAL