Mir511 (microRNA 511) - Rat Genome Database

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Gene: Mir511 (microRNA 511) Rattus norvegicus
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Symbol: Mir511
Name: microRNA 511
RGD ID: 2325483
Description: Predicted to be involved in miRNA-mediated post-transcriptional gene silencing; INTERACTS WITH atrazine; bleomycin A2; zinc atom.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: rno-mir-511
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81782,187,953 - 82,188,031 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1782,187,953 - 82,188,031 (+)EnsemblGRCr8
mRatBN7.21777,279,415 - 77,279,493 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1777,279,415 - 77,279,493 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1780,728,400 - 80,728,478 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01784,563,798 - 84,563,876 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01778,611,701 - 78,611,779 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01781,382,966 - 81,383,044 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1781,382,966 - 81,383,044 (+)Ensemblrn6Rnor6.0
Rnor_5.01783,129,840 - 83,129,918 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera1776,613,614 - 76,613,692 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
atrazine  (EXP)
bleomycin A2  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)

References
Additional References at PubMed
PMID:16381832   PMID:18215311   PMID:20403161   PMID:29353062  


Genomics

Variants

.
Variants in Mir511
2 total Variants
miRNA Target Status (No longer updated)

Predicted Targets
Summary Value
Count of predictions:8815
Count of gene targets:5587
Count of transcripts:5950
Interacting mature miRNAs:rno-miR-511-3p, rno-miR-511-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174238816487388164Rat
631502Cm26Cardiac mass QTL 263.71heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)177061350286062352Rat
1354588Bvd4Brain ventricular dilatation QTL 45.310.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)175819406487388164Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)175482950393515804Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
61466Niddm12Non-insulin dependent diabetes mellitus QTL 123.20.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)176515487293515804Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)174238816487388164Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)174605012691050126Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175560459793006569Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)174265489587654895Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat
1300131Bp193Blood pressure QTL 1933.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176855004093515804Rat
7488963Bp369Blood pressure QTL 3690.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)176369714782818564Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
2302365Gluco40Glucose level QTL 404.79blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)176456982086954580Rat


Expression

RNA-SEQ Expression

appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
4 8 10 22 24 9 14 9 47 30 2 4 11 15 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_032742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000063072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1782,187,953 - 82,188,031 (+)Ensembl
mRatBN7.2 Ensembl1777,279,415 - 77,279,493 (+)Ensembl
Rnor_6.0 Ensembl1781,382,966 - 81,383,044 (+)Ensembl
RefSeq Acc Id: NR_032742
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81782,187,953 - 82,188,031 (+)NCBI
mRatBN7.21777,279,415 - 77,279,493 (+)NCBI
Rnor_6.01781,382,966 - 81,383,044 (+)NCBI
Rnor_5.01783,129,840 - 83,129,918 (+)NCBI
Celera1776,613,614 - 76,613,692 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-8599 BioCyc
Ensembl Genes ENSRNOG00000041319 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000063072 ENTREZGENE
miRBase MI0012591 ENTREZGENE
NCBI Gene 100314126 ENTREZGENE
PhenoGen Mir511 PhenoGen
RatGTEx ENSRNOG00000041319 RatGTEx
RNAcentral URS0000759C8A RNACentral
  URS000075A1EE RNACentral
  URS000075ED9C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-04-09 Mir511  microRNA 511  Mir511  microRNA mir-511  Name updated 61478 APPROVED
2010-06-02 Mir511  microRNA mir-511      Symbol and Name status set to provisional 70820 PROVISIONAL