Mir351 (microRNA 351) - Rat Genome Database

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Gene: Mir351 (microRNA 351) Rattus norvegicus
Analyze
Symbol: Mir351 (Ensembl: Mir351-2)
Name: microRNA 351 (Ensembl:microRNA mir-351-2)
RGD ID: 2325338
Description:
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-351-2; Mir351-1; rno-mir-351; rno-mir-351-1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X137,725,116 - 137,725,196 (-)NCBIGRCr8
mRatBN7.2X132,805,563 - 132,805,643 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX132,805,563 - 132,805,643 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX134,965,612 - 134,965,692 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X138,548,460 - 138,548,540 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X136,114,172 - 136,114,252 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X158,149,206 - 158,149,286 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX158,149,206 - 158,149,286 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X152,774,513 - 152,774,593 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic MapXq36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14691248   PMID:16381832   PMID:16766679   PMID:17604727   PMID:20403161   PMID:26541756   PMID:31990052   PMID:33970551  


Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X103312877148312877Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X103312877148312877Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX100567703150256146Rat
634346Insul4Insulin level QTL 40blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)X126975089152453651Rat
738029Stresp2Stress response QTL 23.40.0004stress-related behavior trait (VT:0010451)defensive burying - approachX112934952138400867Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X113937816152453651Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat

Markers in Region
RH141390  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X132,807,218 - 132,807,415 (-)MAPPERmRatBN7.2
Rnor_6.0X158,147,434 - 158,147,630NCBIRnor6.0
Rnor_6.0X158,583,815 - 158,584,011NCBIRnor6.0
Rnor_5.0X153,210,458 - 153,210,654UniSTSRnor5.0
Rnor_5.0X152,772,741 - 152,772,937UniSTSRnor5.0
RGSC_v3.4X140,000,786 - 140,000,982UniSTSRGSC3.4
BG381125  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X132,805,446 - 132,805,577 (-)MAPPERmRatBN7.2
Rnor_6.0X158,149,272 - 158,149,402NCBIRnor6.0
Rnor_6.0X158,585,653 - 158,585,783NCBIRnor6.0
Rnor_5.0X153,212,296 - 153,212,426UniSTSRnor5.0
Rnor_5.0X152,774,579 - 152,774,709UniSTSRnor5.0
RGSC_v3.4X139,999,014 - 139,999,144UniSTSRGSC3.4
RH 3.4 MapX945.91UniSTS


Expression

RNA-SEQ Expression

circulatory system
ectoderm
endocrine system
endoderm
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
4 11 8 5 3 12 12 2 3 5

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_031796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000075048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 EnsemblX158,149,206 - 158,149,286 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX132,805,563 - 132,805,643 (-)Ensembl
RefSeq Acc Id: NR_031796
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X137,725,116 - 137,725,196 (-)NCBI
mRatBN7.2X132,805,563 - 132,805,643 (-)NCBI
Rnor_6.0X158,149,206 - 158,149,286 (+)NCBI
Rnor_5.0X152,774,513 - 152,774,593 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-986 BioCyc
Ensembl Genes ENSRNOG00000050456 Ensembl
  ENSRNOG00000069684 Ensembl
miRBase MI0000642 ENTREZGENE
NCBI Gene 100314289 ENTREZGENE
PhenoGen Mir351 PhenoGen
RatGTEx ENSRNOG00000050456 RatGTEx
  ENSRNOG00000069684 RatGTEx
RNAcentral URS0000535C1B RNACentral
  URS000075C074 RNACentral
  URS000075E8BD RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Mir351  microRNA 351  Mir351  microRNA mir-351-2  Data merged from RGD:149736341 737654 PROVISIONAL
2021-08-09 Mir351  microRNA mir-351-2      Symbol and Name status set to provisional 45752 PROVISIONAL
2015-04-09 Mir351  microRNA 351  Mir351  microRNA mir-351  Name updated 61478 APPROVED
2010-06-02 Mir351  microRNA mir-351      Symbol and Name status set to provisional 70820 PROVISIONAL