Znf469 (zinc finger protein 469) - Rat Genome Database

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Gene: Znf469 (zinc finger protein 469) Heterocephalus glaber
Analyze
Symbol: Znf469
Name: zinc finger protein 469
RGD ID: 18931539
Description: ENCODES a protein that exhibits zinc ion binding (inferred); INVOLVED IN cell-matrix adhesion (ortholog); collagen fibril organization (ortholog); extracellular matrix constituent secretion (ortholog); ASSOCIATED WITH Brittle Cornea Syndrome (ortholog); brittle cornea syndrome 1 (ortholog); connective tissue disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247461,043,117 - 1,074,776 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




References

Genomics

Comparative Map Data
Znf469
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247461,043,117 - 1,074,776 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
ZNF469
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381688,100,931 - 88,440,753 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1688,382,959 - 88,440,757 (+)Ensemblhg38GRCh38
GRCh371688,449,367 - 88,507,161 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361687,021,380 - 87,034,666 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1673,564,290 - 73,577,602 (+)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1674,187,210 - 74,200,522 (+)NCBIHuRef
CHM1_11689,905,133 - 89,918,418 (+)NCBICHM1_1
T2T-CHM13v2.01694,449,769 - 94,508,741 (+)NCBIT2T-CHM13v2.0
Zfp469
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,770,009 - 122,999,389 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8122,985,359 - 122,999,389 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388122,043,123 - 122,272,650 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8122,258,620 - 122,272,650 (+)Ensemblmm10GRCm38
MGSCv378124,783,967 - 124,796,550 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368125,146,157 - 125,158,740 (+)NCBIMGSCv36mm8
Celera8126,489,037 - 126,501,620 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.85NCBI
Zfp469
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81967,190,901 - 67,232,569 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1967,190,901 - 67,232,569 (+)EnsemblGRCr8
mRatBN7.21950,282,337 - 50,324,010 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1957,075,429 - 57,117,094 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01957,757,281 - 57,798,955 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01959,974,031 - 60,015,706 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1960,987,721 - 61,029,423 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1959,111,861 - 59,153,531 (+)NCBILyon_Normotensive
Lyon_Hypertensive1960,985,311 - 61,026,981 (+)NCBILyon_Hypertensive
F344_StmMcwi1958,718,197 - 58,759,831 (+)NCBIF344_StmMcwi
Rnor_6.01954,843,864 - 55,083,935 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01965,758,945 - 65,800,160 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41952,474,513 - 52,514,139 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1949,329,658 - 49,566,287 (+)NCBICelera
Cytogenetic Map19q12NCBI
Znf469
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555412,404,549 - 2,438,183 (+)NCBIChiLan1.0ChiLan1.0
ZNF469
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21897,864,686 - 98,210,176 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116103,781,045 - 104,124,393 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01668,777,496 - 69,151,995 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11688,800,542 - 88,816,811 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1688,803,202 - 88,815,390 (+)EnsemblpanPan2panpan1.1
ZNF469
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1564,887,534 - 64,903,553 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha564,897,119 - 64,909,874 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0565,106,202 - 65,118,957 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl565,107,572 - 65,118,884 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1565,131,802 - 65,144,557 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0564,963,589 - 64,976,332 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,370,098 - 65,382,853 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf469
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,439,524 - 25,454,515 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366411,193,085 - 1,205,283 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF469
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,162,822 - 1,174,257 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.161,161,514 - 1,208,406 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF469
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1573,762,456 - 73,820,262 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660471,866,974 - 1,926,024 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf469
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11741,890,954 - 41,902,845 (+)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004843210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01025585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_004843210   ⟹   XP_004843267
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247461,043,117 - 1,074,776 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004843267 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004843267   ⟸   XM_004843210
- UniProtKB: A0AAX6P3V6 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro ZNF469 UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report hgl:101710656 UniProtKB/TrEMBL
NCBI Gene Znf469 ENTREZGENE
PANTHER ZINC FINGER PROTEIN 469 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 469 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt A0AAX6P3V6 ENTREZGENE, UniProtKB/TrEMBL