Znf319 (zinc finger protein 319) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Znf319 (zinc finger protein 319) Heterocephalus glaber
Analyze
Symbol: Znf319
Name: zinc finger protein 319
RGD ID: 18923457
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN DNA-templated transcription (inferred); positive regulation of transcription by RNA polymerase II (inferred); regulation of transcription by RNA polymerase II (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,167,741 - 28,174,604 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474628,166,141 - 28,174,623 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Znf319
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,167,741 - 28,174,604 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474628,166,141 - 28,174,623 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
ZNF319
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,994,676 - 58,000,672 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,994,673 - 58,000,672 (-)Ensemblhg38GRCh38
GRCh371658,028,580 - 58,034,576 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361656,586,074 - 56,591,263 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341656,586,073 - 56,591,263NCBI
Celera1642,525,897 - 42,531,086 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1643,895,562 - 43,900,755 (-)NCBIHuRef
CHM1_11659,435,643 - 59,440,836 (-)NCBICHM1_1
T2T-CHM13v2.01663,789,961 - 63,795,961 (-)NCBIT2T-CHM13v2.0
Zfp319
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39896,052,759 - 96,058,439 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl896,049,639 - 96,058,578 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38895,326,131 - 95,331,811 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,323,011 - 95,331,950 (-)Ensemblmm10GRCm38
MGSCv37897,850,036 - 97,855,850 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36898,215,265 - 98,221,079 (-)NCBIMGSCv36mm8
Celera899,647,100 - 99,652,917 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map847.12NCBI
Zfp319
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,708,881 - 9,712,860 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl199,707,983 - 9,728,711 (+)EnsemblGRCr8
mRatBN7.2199,702,827 - 9,706,806 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,702,144 - 9,713,198 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx199,667,826 - 9,671,808 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,434,655 - 10,438,637 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,720,986 - 9,724,968 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd199,699,785 - 9,703,767 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1913,511,722 - 13,515,704 (+)NCBILyon_Normotensive
Lyon_Hypertensive1914,004,611 - 14,008,593 (+)NCBILyon_Hypertensive
F344_StmMcwi199,551,767 - 9,555,749 (+)NCBIF344_StmMcwi
Rnor_6.01910,119,253 - 10,123,232 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,119,253 - 10,123,232 (+)Ensemblrn6Rnor6.0
Rnor_5.01910,103,086 - 10,107,065 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41910,162,638 - 10,166,617 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera199,595,697 - 9,599,676 (+)NCBICelera
RGSC_v3.11910,169,697 - 10,171,443 (+)NCBI
Cytogenetic Map19p13NCBI
Znf319
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,561,801 - 15,567,417 (-)Ensembl
ChiLan1.0NW_00495543315,561,801 - 15,567,417 (-)NCBIChiLan1.0ChiLan1.0
ZNF319
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21867,465,739 - 67,472,449 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11673,386,612 - 73,393,324 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01638,271,321 - 38,277,306 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11657,402,775 - 57,408,189 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1657,404,624 - 57,406,372 (-)EnsemblpanPan2panpan1.1
ZNF319
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,549,931 - 58,556,406 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,551,659 - 58,557,037 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha255,179,448 - 55,186,214 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0259,088,382 - 59,095,149 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,088,357 - 59,095,149 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1255,919,773 - 55,926,540 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,927,290 - 56,934,057 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,820,559 - 57,827,330 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Znf319
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,656,542 - 49,662,040 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,927,055 - 9,931,905 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,926,867 - 9,932,477 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF319
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,842,585 - 19,851,288 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1619,845,190 - 19,865,842 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,761,912 - 17,767,354 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF319
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,926,105 - 43,932,069 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,927,948 - 43,929,696 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604732,246,686 - 32,252,717 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf319
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1172,187,457 - 2,193,229 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000016253   ⟹   ENSHGLP00000016084
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474628,167,741 - 28,174,604 (+)Ensembl
RefSeq Acc Id: XM_013071600   ⟹   XP_012927054
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,166,611 - 28,174,623 (+)NCBI
RefSeq Acc Id: XM_013071601   ⟹   XP_012927055
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,166,611 - 28,174,623 (+)NCBI
RefSeq Acc Id: XM_021256975   ⟹   XP_021112634
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,166,611 - 28,174,623 (+)NCBI
RefSeq Acc Id: XM_021256976   ⟹   XP_021112635
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,166,611 - 28,174,623 (+)NCBI
RefSeq Acc Id: XM_021256977   ⟹   XP_021112636
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,166,611 - 28,174,623 (+)NCBI
RefSeq Acc Id: XM_021256978   ⟹   XP_021112637
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,166,141 - 28,174,623 (+)NCBI
RefSeq Acc Id: XM_021256979   ⟹   XP_021112638
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474628,166,611 - 28,174,623 (+)NCBI
RefSeq Acc Id: XP_021112637   ⟸   XM_021256978
- UniProtKB: G5AUF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112634   ⟸   XM_021256975
- UniProtKB: G5AUF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112635   ⟸   XM_021256976
- UniProtKB: G5AUF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112636   ⟸   XM_021256977
- UniProtKB: G5AUF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112638   ⟸   XM_021256979
- UniProtKB: G5AUF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012927054   ⟸   XM_013071600
- UniProtKB: G5AUF9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012927055   ⟸   XM_013071601
- UniProtKB: G5AUF9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000016084   ⟸   ENSHGLT00000016253


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011504 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016253 ENTREZGENE
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report hgl:101720039 UniProtKB/TrEMBL
NCBI Gene Znf319 ENTREZGENE
PANTHER ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 319 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RNAcentral URS00027F77B5 RNACentral
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt G5AUF9 ENTREZGENE, UniProtKB/TrEMBL