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Gene: Zfp319 (zinc finger protein 319) Mus musculus

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Symbol:

Zfp319

Name:

zinc finger protein 319

RGD ID:

1314678

MGI Page

MGI

Description:

Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleus. Is expressed in several structures, including central nervous system and genitourinary system. Orthologous to human ZNF319 (zinc finger protein 319).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

AI225750; AI413472; KIAA1388; mKIAA1388; Znf319

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF319 (zinc finger protein 319)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Zfp319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Znf319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ZNF319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf319 (zinc finger protein 319)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Zfp319 (zinc finger protein 319)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	ZNF319 (zinc finger protein 319)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	znf319b (zinc finger protein 319b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Xenopus tropicalis (tropical clawed frog):	znf319	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	96,052,759 - 96,058,439 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	96,049,639 - 96,058,578 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	95,326,131 - 95,331,811 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	95,323,011 - 95,331,950 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	97,850,036 - 97,855,850 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	98,215,265 - 98,221,079 (-)	NCBI		MGSCv36	mm8
Celera	8	99,647,100 - 99,652,917 (-)	NCBI		Celera
Cytogenetic Map	8	C5	NCBI
cM Map	8	47.12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zfp319	Mouse	Bardet-Biedl syndrome		ISO	ZNF319 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Bardet-Biedl syndrome	ClinVar	PMID:11285252 more ...
Zfp319	Mouse	Chromosome 16q12 Duplication Syndrome		ISO	ZNF319 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome 16q12 duplication syndrome	ClinVar	PMID:25741868
Zfp319	Mouse	developmental and epileptic encephalopathy		ISO	ZNF319 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy	ClinVar	PMID:11285252 more ...
Zfp319	Mouse	early infantile epileptic encephalopathy		ISO	ZNF319 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Early infantile epileptic encephalopathy	ClinVar	PMID:11285252 more ...

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zfp319	Mouse	1,2-dimethylhydrazine	increases expression	EXP		6480464	1 and 2-Dimethylhydrazine results in increased expression of ZFP319 mRNA	CTD	PMID:22206623
Zfp319	Mouse	17alpha-ethynylestradiol	increases expression	ISO	Zfp319 (Rattus norvegicus)	6480464	Ethinyl Estradiol results in increased expression of ZFP319 mRNA	CTD	PMID:29097150
Zfp319	Mouse	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of ZFP319 mRNA	CTD	PMID:21570461
Zfp319	Mouse	2-methylcholine	affects expression	ISO	ZNF319 (Homo sapiens)	6480464	beta-methylcholine affects the expression of ZNF319 mRNA	CTD	PMID:21179406
Zfp319	Mouse	4-hydroxyphenyl retinamide	increases expression	EXP		6480464	Fenretinide results in increased expression of ZNF319 mRNA	CTD	PMID:28973697
Zfp319	Mouse	aflatoxin B1	decreases expression	ISO	Zfp319 (Rattus norvegicus)	6480464	Aflatoxin B1 results in decreased expression of ZFP319 mRNA	CTD	PMID:33354967
Zfp319	Mouse	amphetamine	decreases expression	ISO	Zfp319 (Rattus norvegicus)	6480464	Amphetamine results in decreased expression of ZFP319 mRNA	CTD	PMID:30779732
Zfp319	Mouse	atrazine	decreases expression	ISO	ZNF319 (Homo sapiens)	6480464	Atrazine results in decreased expression of ZNF319 mRNA	CTD	PMID:22378314
Zfp319	Mouse	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of ZFP319 mRNA	CTD	PMID:26063408
Zfp319	Mouse	bisphenol A	increases expression	ISO	Zfp319 (Rattus norvegicus)	6480464	bisphenol A results in increased expression of ZFP319 mRNA	CTD	PMID:34947998
Zfp319	Mouse	bisphenol A	affects expression	ISO	Zfp319 (Rattus norvegicus)	6480464	bisphenol A affects the expression of ZNF319 mRNA	CTD	PMID:25181051
Zfp319	Mouse	cadmium dichloride	decreases expression	ISO	ZNF319 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of ZNF319 mRNA	CTD	PMID:38568856
Zfp319	Mouse	carbon nanotube	increases expression	EXP		6480464	Nanotubes and Carbon results in increased expression of ZFP319 mRNA	CTD	PMID:25554681
Zfp319	Mouse	CGP 52608	multiple interactions	ISO	ZNF319 (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to ZNF319 gene]	CTD	PMID:28238834
Zfp319	Mouse	cisplatin	increases expression	ISO	ZNF319 (Homo sapiens)	6480464	Cisplatin results in increased expression of ZNF319 mRNA	CTD	PMID:19561079
Zfp319	Mouse	copper(II) sulfate	decreases expression	ISO	ZNF319 (Homo sapiens)	6480464	Copper Sulfate results in decreased expression of ZNF319 mRNA	CTD	PMID:19549813
Zfp319	Mouse	Dibutyl phosphate	affects expression	ISO	ZNF319 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of ZNF319 mRNA	CTD	PMID:37042841
Zfp319	Mouse	disodium selenite	increases expression	ISO	ZNF319 (Homo sapiens)	6480464	Sodium Selenite results in increased expression of ZNF319 mRNA	CTD	PMID:18175754
Zfp319	Mouse	ethyl methanesulfonate	increases expression	ISO	ZNF319 (Homo sapiens)	6480464	Ethyl Methanesulfonate results in increased expression of ZNF319 mRNA	CTD	PMID:23649840
Zfp319	Mouse	folic acid	decreases expression	EXP		6480464	Folic Acid results in decreased expression of ZFP319 mRNA	CTD	PMID:25629700
Zfp319	Mouse	gentamycin	decreases expression	ISO	Zfp319 (Rattus norvegicus)	6480464	Gentamicins results in decreased expression of ZFP319 mRNA	CTD	PMID:33387578
Zfp319	Mouse	GSK-J4	decreases expression	ISO	ZNF319 (Homo sapiens)	6480464	GSK-J4 results in decreased expression of ZNF319 mRNA	CTD	PMID:29301935
Zfp319	Mouse	iron dichloride	decreases expression	ISO	ZNF319 (Homo sapiens)	6480464	ferrous chloride results in decreased expression of ZNF319 mRNA	CTD	PMID:35984750
Zfp319	Mouse	methyl methanesulfonate	increases expression	ISO	ZNF319 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of ZNF319 mRNA	CTD	PMID:23649840
Zfp319	Mouse	N-ethyl-N-nitrosourea	increases mutagenesis	EXP		6480464	Ethylnitrosourea results in increased mutagenesis of ZFP319 mRNA	CTD	PMID:27776689
Zfp319	Mouse	orphenadrine	affects expression	ISO	Zfp319 (Rattus norvegicus)	6480464	Orphenadrine affects the expression of ZFP319 mRNA	CTD	PMID:23665939
Zfp319	Mouse	ozone	multiple interactions	EXP		6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of ZFP319 mRNA	CTD	PMID:34911549
Zfp319	Mouse	paracetamol	increases expression	ISO	Zfp319 (Rattus norvegicus)	6480464	Acetaminophen results in increased expression of ZFP319 mRNA	CTD	PMID:33387578
Zfp319	Mouse	perfluorooctane-1-sulfonic acid	multiple interactions	EXP		6480464	[perfluorooctane sulfonic acid co-treated with Pectins] results in decreased expression of ZFP319 mRNA	CTD	PMID:36331819
Zfp319	Mouse	pirinixic acid	decreases expression	EXP		6480464	pirinixic acid results in decreased expression of ZFP319 mRNA	CTD	PMID:20813756
Zfp319	Mouse	sunitinib	increases expression	ISO	ZNF319 (Homo sapiens)	6480464	Sunitinib results in increased expression of ZNF319 mRNA	CTD	PMID:31533062
Zfp319	Mouse	thiram	decreases expression	ISO	ZNF319 (Homo sapiens)	6480464	Thiram results in decreased expression of ZNF319 mRNA	CTD	PMID:38568856
Zfp319	Mouse	tungsten	decreases expression	EXP		6480464	Tungsten results in decreased expression of ZFP319 mRNA	CTD	PMID:30912803
Zfp319	Mouse	valproic acid	increases methylation	ISO	ZNF319 (Homo sapiens)	6480464	Valproic Acid results in increased methylation of ZNF319 gene	CTD	PMID:29154799
Zfp319	Mouse	valproic acid	affects expression	ISO	ZNF319 (Homo sapiens)	6480464	Valproic Acid affects the expression of ZNF319 mRNA	CTD	PMID:25979313
Zfp319	Mouse	valproic acid	decreases expression	ISO	ZNF319 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of ZNF319 mRNA	CTD	PMID:28001369
Zfp319	Mouse	valproic acid	decreases expression	ISO	Zfp319 (Rattus norvegicus)	6480464	Valproic Acid results in decreased expression of ZFP319 mRNA	CTD	PMID:29427782

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zfp319	Mouse	regulation of transcription by RNA polymerase II	involved_in	IBA	PANTHER:PTN002393781 more ...	2290270		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zfp319	Mouse	nucleus	is_active_in	IBA	PANTHER:PTN002393781 more ...	2290270		GO_Central	GO_REF:0000033
Zfp319	Mouse	nucleus	located_in	IDA		2290270	PMID:11161788	MGI	PMID:11161788

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zfp319	Mouse	DNA binding	enables	IEA	UniProtKB-KW:KW-0238	2290270		UniProt	GO_REF:0000043
Zfp319	Mouse	protein binding	enables	ISO	UniProtKB:A8MQ03 more ...	9068941	PMID:32296183	IntAct	PMID:32296183
Zfp319	Mouse	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	2290270		UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Mouse brain organization revealed through direct genome-scale TF expression analysis.	Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
2.	Electronic Transfer of Homolog Data	MGD and Homologene mouse data transfer
3.	MGDs mouse GO annotations	MGD data from the GO Consortium
4.	Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries.	Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
5.	Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11161788	PMID:11217851	PMID:12477932	PMID:15489334	PMID:16141072	PMID:16141073	PMID:16602821	PMID:18287559
PMID:20059953	PMID:21267068	PMID:21677750	PMID:21873635

Zfp319
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	96,052,759 - 96,058,439 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	96,049,639 - 96,058,578 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	95,326,131 - 95,331,811 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	95,323,011 - 95,331,950 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	97,850,036 - 97,855,850 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	98,215,265 - 98,221,079 (-)	NCBI		MGSCv36	mm8
Celera	8	99,647,100 - 99,652,917 (-)	NCBI		Celera
Cytogenetic Map	8	C5	NCBI
cM Map	8	47.12	NCBI

ZNF319
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	57,994,676 - 58,000,672 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	57,994,676 - 58,000,672 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	58,028,580 - 58,034,576 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	56,586,074 - 56,591,263 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	56,586,073 - 56,591,263	NCBI
Celera	16	42,525,897 - 42,531,086 (-)	NCBI		Celera
Cytogenetic Map	16	q21	NCBI
HuRef	16	43,895,562 - 43,900,755 (-)	NCBI		HuRef
CHM1_1	16	59,435,643 - 59,440,836 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	63,789,961 - 63,795,961 (-)	NCBI		T2T-CHM13v2.0

Zfp319
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	9,708,881 - 9,712,860 (+)	NCBI		GRCr8
mRatBN7.2	19	9,702,827 - 9,706,806 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	9,702,144 - 9,713,198 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	9,667,826 - 9,671,808 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	10,434,655 - 10,438,637 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	9,720,986 - 9,724,968 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	10,119,253 - 10,123,232 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	10,119,253 - 10,123,232 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	10,103,086 - 10,107,065 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	10,162,638 - 10,166,617 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	19	10,169,697 - 10,171,443 (+)	NCBI
Celera	19	9,595,697 - 9,599,676 (+)	NCBI		Celera
Cytogenetic Map	19	p13	NCBI

Znf319
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955433	15,561,801 - 15,567,417 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955433	15,561,801 - 15,567,417 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF319
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	67,465,739 - 67,472,449 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	73,386,612 - 73,393,324 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	38,271,321 - 38,277,306 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	57,402,775 - 57,408,189 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	57,404,624 - 57,406,372 (-)	Ensembl	panpan1.1		panPan2

ZNF319
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	58,549,931 - 58,556,406 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	58,551,659 - 58,557,037 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	55,179,448 - 55,186,214 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	59,088,382 - 59,095,149 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	59,088,357 - 59,095,149 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	55,919,773 - 55,926,540 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	56,927,290 - 56,934,057 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	57,820,559 - 57,827,330 (+)	NCBI		UU_Cfam_GSD_1.0

Znf319
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	49,656,542 - 49,662,040 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	9,927,055 - 9,931,905 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	9,926,867 - 9,932,477 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF319
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	19,842,585 - 19,851,288 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	19,845,190 - 19,865,842 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	17,761,912 - 17,767,354 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF319
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	43,926,105 - 43,932,069 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	43,927,948 - 43,929,696 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	32,246,686 - 32,252,717 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf319
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	28,167,741 - 28,174,604 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624746	28,166,141 - 28,174,623 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Zfp319
259 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	1015
Count of miRNA genes:	544
Interacting mature miRNAs:	657
Transcripts:	ENSMUST00000057717, ENSMUST00000098479
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	66326836	100326976	Mouse
14696809	Rbcn3_m	rod bipolar cell number 3 (mouse)					8	95056628	102856632	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	35109930	115563747	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	66084397	100084549	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	71032003	105032123	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	76411976	110412125	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	85486208	119486373	Mouse
1301253	Skmw2_m	skeletal muscle weight 2 (mouse)			Not determined		8	86443553	120443701	Mouse
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32506572	117965439	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71740461	124622354	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			64186736	98186736	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	64666176	98666325	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	82345783	116345783	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37867154	110326632	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79808806	113809031	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	76411976	110412125	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	72122809	106123021	Mouse
10045619	Heal14_m	wound healing/regeneration 14 (mouse)			Not determined		8	86443553	120443701	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71829531	105829637	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73929123	107929226	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81819296	115819296	Mouse
1302049	Heal1_m	wound healing/regeneration 1 (mouse)			Not determined		8	86443553	120443701	Mouse
27226796	Scvln16_m	sacral vertebrae length 2, 16 week (mouse)					8	89726628	130027694	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	71032003	105032123	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	74126628	126826739	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71740461	124622354	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	79245241	113245331	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	76402145	110402251	Mouse

RH135968

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	95,323,457 - 95,323,664	UniSTS	GRCm38
MGSCv37	8	97,847,357 - 97,847,564	UniSTS	GRCm37
Celera	8	99,644,423 - 99,644,630	UniSTS
Cytogenetic Map	8	D1	UniSTS

AI413472

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	95,323,051 - 95,323,168	UniSTS	GRCm38
MGSCv37	8	97,846,951 - 97,847,068	UniSTS	GRCm37
Celera	8	99,644,017 - 99,644,134	UniSTS
Cytogenetic Map	8	D1	UniSTS
Whitehead/MRC_RH	8	1158.85	UniSTS

UniSTS:235966

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	95,324,469 - 95,324,798	UniSTS	GRCm38
MGSCv37	8	97,848,369 - 97,848,698	UniSTS	GRCm37
Celera	8	99,645,433 - 99,645,762	UniSTS
Cytogenetic Map	8	D1	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	NM_024467	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC165414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF288403	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK048624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK052274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK089263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK122500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK148655	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC033441	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC059823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000057717 ⟹ ENSMUSP00000053397

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	8	96,049,639 - 96,058,578 (-)	Ensembl
GRCm38.p6 Ensembl	8	95,323,011 - 95,331,950 (-)	Ensembl

RefSeq Acc Id:

NM_024467 ⟹ NP_077787

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	96,052,759 - 96,058,439 (-)	NCBI
GRCm38	8	95,326,131 - 95,331,811 (-)	NCBI
MGSCv37	8	97,850,036 - 97,855,850 (-)	RGD
Celera	8	99,647,100 - 99,652,917 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

CTACCCGGCCTCGCGCCGACCCTCTGTCCGCCGGTCTCTGCAAGACCCGTCGGTCTGTCCGCTCGCCCGTCCGTCCGCTGCCCCGGTCCCGCTAACCCGAGTGCGCGGGTCGATTCGTCGGTTCCGGC
TGCTGCAAACCTGTCTCCCGACTCCGCGCTGCCTGCCTCTGCTACGCGAGGCCCGGGGATTGGCAGGACGCGTAGGCCGCGCCGCGGCGGATGGAGCCGGAATAAAGAGGCGGCAGAGAAAGCAGCTG
GTCTTCGCTTGTCCCGCGCCTGACCCCTGGAGCAGAACCGATTACTGGGGAAGGCACAGCCTTCTTAGCATTGCCAGGACCCTGTCTCGAAGAGCCCTCCCGTCCTGCAGGCTATCTTCTTGGCTAAT
GACAAGGGCTATCTGACAAGGCCTCTGTGCCCTGTGTGAGGTTCTTGTCCGAACCTGAGATCCGGTAGCTTCTCTCAGGGTTAGGTTCACCTTAAGCGGGGAAACTGAAGCCATTACTGTCCAAACCC
AGTTTCATCTTCCCAAGCATGTCAGAAAGCTGGCAGCAGCCACCGCAGACTCAGCCACAGCAGCCACAGGCGCCGCAGCCTCAGCACCATGCAGAGACACCTCCAGCCCTGGCTGAGCACACGCTGCC
CCCAGGCTCGGCCGAGAACCCCCTGGGCTGTGCCGTGTACGGCATACTCCTGCAACCCGACCCAGGCCTCCAGCCCCCACAGCATGCACCCCTGCAAGCCGGGGAGCCGGGCCCCAAATGTGGCGTGT
GTGGCCATGATCTGGCACACCTGTCCAGTCCGCATGAGCACCAGTGCCTGGCAGGCCACGACCGCTCATTCCAGTGCACACAGTGTCTTAAGATCTTCCATCAGGCCACCGACCTGCTGGAGCACCAG
TGTGTGCAGGCCGAGCAGAAGCCTTTTGTCTGCGGTGTTTGCAAAATGGGCTTCTCCCTGCTCACCTCACTGGCCCAACACCACAGCTCCCACACCGGCATGGTCAAGTGCTCCATTTGTGATAAGAC
CTACAAGCCAGCTGAGGCTGCGGAGCCGGCCACCACCACCGCCCCATCACTGCCCTCAGCACCTCCACCTGCTAACATAGCCCCTGTGGAGCAACCGGAAAAGCCCTATAGCTGCCCCGTTTGCCAGA
AGCCCTTCAAGCACCTGTCGGAGCTCTCCCGGCATGAGCGGATCCACACCGGAGAGAAGCCGTATAAGTGCACGCTGTGTGACAAGAGCTTCAGCCAGTCCTCGCACCTCGTGCACCACAAGCGCACA
CACAGCTCGGAGCGGCCCTACAAGTGCGCTGTCTGCGAGAAGACCTTTAAGCACCGCTCGCATCTGGTGCGCCACATGTACGCGCATTCTGGCGAGCATCACCTCTTCCGCTGCAACGTGTGCGAGCT
GCATTTCAAAGAGTCGTCCGAGCTGCTGCAGCACCCCTGTACCCCGAGCGGCGAGCGGCCCTTCCGCTGCGGCGAGTGCCAGAAGGCCTTCAAGCGGCCGTCGGACCTGCGGCAGCATGAGCGCACGC
ACAGTGCGGAGAGGCCCTTCAAGTGTGATCTGTGCCCCATGGGCTTCAAACAGCAGTACGCACTGATGCGCCACCGGCGCACACACAAGACGGAAGAACCCTTTAAGTGCGGCCTGTGCGAGAAGGGC
TTCGGCCAGCCCAGCCACCTGCTCTACCACCAGCACGTGCACACCCTGGAGACTCTGTTCAAGTGCCCGGTGTGCCAGAAGGGCTTCGACCAGTCGGCCGAGCTGCTGCGGCACAAGTGCCTGCCAAC
CTCCACCGAGCGGCCCTTCAAGTGCCCCGTGTGTAACAAGGCCTACAAGCGGGCATCCGCTCTGCAGAAGCACCAGCTGTCCCACTGCGCTGCCGCCGAGAAGCCTCTGCGGTGCACCCTGTGCGAGC
GCCGCTTTTTTTCTTCCTCGGAGTTCGTGCAGCACCGCTGTGACCCGGCCCGGGAGAAGCCGCTCAAGTGTCCGGACTGCGAGAAGCGCTTCAAGTATGCCTCAGACCTGCAACGCCACCGGCGGGTG
CACACGGGCGAGAAGCCCTACAAGTGCCCTAGCTGCGATAAAGCCTTCAAGCAGCGAGAGCATCTCAACAAGCACCAGGGCGTGCATGCCCGAGAGCAGCAGTTCAAGTGTGTGTGGTGCGGCGAACG
CTTTCTGGATGTGGCGCTGCTACAGGAGCACAGTGCCCAGCACAGTGCTGCCGCCGCAGCCGCGGAGGGCGCCTACCAGGTGGCAGCCTGCTTGCCCTAAGGCCTCGGTGCCCGCCGCCACCTGCCCT
GTCTAGTCTTGCCTGCTTGCAGCTGCATGGCAGCAAGCCTGTCAGTCAGCTGCCTCCTCAGGAGTCGGGACCAAAGGGCTCTTCTGGGCAGGTGGAGGGTGCGCATGTTCGGTATTCTTAGCACCAGC
CTGGCCGTGGGAAGAGCCAAACTGCAGTGGCCAGACCCCAATTCCATCCACTTCTTCCCCATGACAGGACTTGCTTTCTGAGAACCTGCTACACCCCTTACCTGTAGGGAACTTGAATTCTACCTGTA
ATCAGGTGCCTCTCTGCCCCAGGAGTCGGGGATGCCAACCCAATTTTCCCAGCTCTTCAGCCTAGTTAGAAAGCTGATGGCTTGGGAAGAAGTAAGTACGGTTTCTTCTCAAGTTGCGTTTTTATTGG
GGGTGGGGGGAGGCAAGCTTGAGACAGATCTGGGGACTTAGAATGGAGACAGAGCTACAGTCCCCTGACTGCCCAGCTAGGACAAATGTGCCCCAACCCCAAGTTTTTGATAGAGATGTAGGATAGGA
AGGAGTCTGTGGGTACTGTCTGCTTGGAGACTAGGGGCCCAATCAGGGTGGGGGAAGCAGAAACATTCCACGACACCCTCAGTTCAGCCAGGGCTGTCCACAGAGAAAGGGACACAAGCAGCCCATGT
CCTGAGTCTGTGGAAGACTCTCCTGCCTGTGAGTGGTTCTGAGCTGCAGGGGAATGAGTGTGCCCAGAGCAGAGCTGCGGTGTGGAAGTGGAGGACTGTTAGTCCCCTGACCTTCATCCCTGGGTTGG
GGAGGAAGGAAGACCAAGCCTATGATTTCCCGGCAGATGTAAACAGGTCCCTTCCTATGTCATGTGAACCAAAGTGTCCGGGGCTCAGAGTCATAGGCTTGTCCCAGCCCTGCCTGAGGGCCAAAGGG
AGTCCCAGGTATCCAGGGTGAGGACTGTCCTCTTACCCCCACAGAGCCCCCAGGCCCTAAGGATCGTCCATTGCTGTAACAACCTGCTGTCTTTTGAGCCCTGGGAACCCTACCCCCACCCCCCAGGT
CTTTGGCTTCTCACAGCCTGCTTCCTGTAGCAGATGTGGGTACACAAGGAGTGGGAAGCCCAGCAGGCAGCATTCTTGGTAGGTACACGGTCAGCCACCATCACTGGATGGCCAGAGCCACCACGGGA
GACTGGAGGACCTTTGTTGTCAGTCATCGTTCTGAACCCAGCACTGACCATGCCCCTTTCAGCCCCCTCTCTACCCGTGAGTCTTGGAAGACGACTGATCACTAAGTCAGGGGTCAGATGGGTAGGAG
GAAACCACCTCACCTCATCTGAAAAGTCCAGCTGGCCACATCCGGCTCTCTGTCTGCCCAGGTTCTCTCCTGTGTCCATAGAGACTGAGCTTAGCACTTCTCTTGGGTTGACTCTTGGTCACAAAGCC
TCAAAAAACTGGAACTCAGGCTTATAACAGCCTAGTCCTAACTGCTAGGTTTTTTTCCTTTCATTTTTGCATTCTAAAAGCTGTTTATTATACTATTCATAACATTGTATAGCTTAATTTCATGTCAT
TTTGGATCATATATAAATATGAGAGTTTGGAATTTTTAAAAGAATGACTCCATTTTAGGCAGCCACTTTTGATGTTAAATACAGTGAGTTTGACATGTGCTCTAGAAGTAAAGACATTGACCGGTGCA
GCCCA

hide sequence


Protein RefSeqs	NP_077787	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG28743	(Get FASTA)	NCBI Sequence Viewer
	AAH59823	(Get FASTA)	NCBI Sequence Viewer
	BAC34912	(Get FASTA)	NCBI Sequence Viewer
	BAC65782	(Get FASTA)	NCBI Sequence Viewer
	BAE28634	(Get FASTA)	NCBI Sequence Viewer
	EDL11166	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000053397
	ENSMUSP00000053397.7
GenBank Protein	Q9ERR8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_077787 ⟸ NM_024467

- UniProtKB:

Q9ERR8 (UniProtKB/Swiss-Prot), Q8C7A0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSESWQQPPQTQPQQPQAPQPQHHAETPPALAEHTLPPGSAENPLGCAVYGILLQPDPGLQPPQHAPLQAGEPGPKCGVCGHDLAHLSSPHEHQCLAGHDRSFQCTQCLKIFHQATDLLEHQCVQAEQ
KPFVCGVCKMGFSLLTSLAQHHSSHTGMVKCSICDKTYKPAEAAEPATTTAPSLPSAPPPANIAPVEQPEKPYSCPVCQKPFKHLSELSRHERIHTGEKPYKCTLCDKSFSQSSHLVHHKRTHSSERP
YKCAVCEKTFKHRSHLVRHMYAHSGEHHLFRCNVCELHFKESSELLQHPCTPSGERPFRCGECQKAFKRPSDLRQHERTHSAERPFKCDLCPMGFKQQYALMRHRRTHKTEEPFKCGLCEKGFGQPSH
LLYHQHVHTLETLFKCPVCQKGFDQSAELLRHKCLPTSTERPFKCPVCNKAYKRASALQKHQLSHCAAAEKPLRCTLCERRFFSSSEFVQHRCDPAREKPLKCPDCEKRFKYASDLQRHRRVHTGEKP
YKCPSCDKAFKQREHLNKHQGVHAREQQFKCVWCGERFLDVALLQEHSAQHSAAAAAAEGAYQVAACLP

hide sequence

Ensembl Acc Id:

ENSMUSP00000053397 ⟸ ENSMUST00000057717

Protein Domains

C2H2-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9ERR8-F1-model_v2	AlphaFold	Q9ERR8	1-581	view protein structure

RGD ID:

8667953

Promoter ID:

EPDNEW_M12008

Type:

single initiation site

Name:

Zfp319_1

Description:

Mus musculus zinc finger protein 319 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	95,331,932 - 95,331,992	EPDNEW

RGD ID:

6842603

Promoter ID:

MM_KWN:55390

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

ENSMUST00000057717, NM_133954, OTTMUST00000077546, OTTMUST00000077547

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	97,855,491 - 97,857,197 (+)	MPROMDB

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000046556	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000057717	ENTREZGENE
	ENSMUST00000057717.8	UniProtKB/Swiss-Prot
Gene3D-CATH	Classic Zinc Finger	UniProtKB/Swiss-Prot
InterPro	Znf_C2H2_sf	UniProtKB/Swiss-Prot
	Znf_C2H2_type	UniProtKB/Swiss-Prot
KEGG Report	mmu:79233	UniProtKB/Swiss-Prot
MGD	MGI:1890618	ENTREZGENE
NCBI Gene	79233	ENTREZGENE
PANTHER	ZINC FINGER PROTEIN	UniProtKB/Swiss-Prot
	ZINC FINGER PROTEIN 672-RELATED	UniProtKB/Swiss-Prot
Pfam	zf-C2H2	UniProtKB/Swiss-Prot
	zf-H2C2_2	UniProtKB/Swiss-Prot
PhenoGen	Zfp319	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/Swiss-Prot
	ZINC_FINGER_C2H2_2	UniProtKB/Swiss-Prot
SMART	ZnF_C2H2	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF57667	UniProtKB/Swiss-Prot
UniProt	Q3UFC7_MOUSE	UniProtKB/TrEMBL
	Q80TE5_MOUSE	UniProtKB/TrEMBL
	Q8C7A0	ENTREZGENE, UniProtKB/TrEMBL
	Q9ERR8	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar