Igsf5 (immunoglobulin superfamily member 5) - Rat Genome Database

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Gene: Igsf5 (immunoglobulin superfamily member 5) Heterocephalus glaber
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Symbol: Igsf5
Name: immunoglobulin superfamily member 5
RGD ID: 18922830
Description: ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN bicellular tight junction (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474524,280,360 - 24,330,509 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Igsf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474524,280,360 - 24,330,509 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
IGSF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382139,711,771 - 39,802,081 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2139,745,183 - 39,802,081 (+)Ensemblhg38GRCh38
GRCh372141,117,110 - 41,174,008 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362140,039,204 - 40,095,893 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2126,314,757 - 26,371,484 (+)NCBICelera
Cytogenetic Map21q22.2NCBI
HuRef2126,586,615 - 26,643,328 (+)NCBIHuRef
CHM1_12140,678,069 - 40,734,791 (+)NCBICHM1_1
T2T-CHM13v2.02138,096,241 - 38,186,566 (+)NCBIT2T-CHM13v2.0
Igsf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391696,162,676 - 96,266,772 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1696,162,868 - 96,223,321 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381696,361,479 - 96,465,572 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1696,361,668 - 96,422,121 (+)Ensemblmm10GRCm38
MGSCv371696,583,364 - 96,643,728 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361696,466,704 - 96,508,938 (+)NCBIMGSCv36mm8
Celera1697,438,053 - 97,498,945 (+)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1656.93NCBI
Igsf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81149,155,990 - 49,198,872 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1149,156,341 - 49,210,603 (+)EnsemblGRCr8
mRatBN7.21135,686,513 - 35,729,396 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,686,705 - 35,741,129 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1144,337,555 - 44,379,045 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01137,008,927 - 37,050,415 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01136,161,291 - 36,203,722 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1151,027,277 - 51,070,517 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1149,318,629 - 49,361,867 (+)NCBILyon_Normotensive
Lyon_Hypertensive1150,237,746 - 50,280,988 (+)NCBILyon_Hypertensive
F344_StmMcwi1148,963,129 - 49,006,376 (+)NCBIF344_StmMcwi
Rnor_6.01136,736,580 - 36,779,614 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1136,736,586 - 36,779,615 (+)Ensemblrn6Rnor6.0
Rnor_5.01140,264,840 - 40,305,321 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41136,698,885 - 36,755,559 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1132,750,117 - 32,790,934 (-)NCBICelera
RGSC_v3.11136,756,473 - 36,813,146 (+)NCBI
Cytogenetic Map11q11NCBI
Igsf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540738,468,816 - 38,512,243 (+)Ensembl
ChiLan1.0NW_00495540738,468,873 - 38,510,040 (+)NCBIChiLan1.0ChiLan1.0
IGSF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22235,701,263 - 35,902,111 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12130,557,376 - 30,758,128 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02126,079,931 - 26,157,483 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12139,435,321 - 39,491,196 (+)NCBIPanPan1.1PanPan1.1panPan2
IGSF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13134,438,959 - 34,482,869 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3134,442,719 - 34,482,142 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3133,716,206 - 33,760,110 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03133,951,242 - 33,995,344 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3133,954,973 - 33,994,947 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13133,822,278 - 33,864,850 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03133,827,115 - 33,870,991 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03134,319,272 - 34,363,166 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Igsf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497133,911,941 - 33,939,814 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365003,519,224 - 3,553,071 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365003,518,884 - 3,553,071 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IGSF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113203,325,385 - 203,372,361 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213213,445,798 - 213,493,257 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IGSF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1283,671,466 - 83,695,487 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl283,694,619 - 83,732,133 (+)NCBIChlSab1.1 EnsemblchlSab2Vervet-AGM
ChlSab1.1 Ensembl283,694,619 - 83,732,133 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605411,524,249 - 11,582,822 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Igsf5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1448,266,315 - 48,304,200 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_004842355   ⟹   XP_004842412
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474524,280,360 - 24,330,509 (-)NCBI
RefSeq Acc Id: XM_004842356   ⟹   XP_004842413
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474524,280,360 - 24,330,507 (-)NCBI
RefSeq Acc Id: XM_004842357   ⟹   XP_004842414
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474524,280,360 - 24,330,502 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004842412 (Get FASTA)   NCBI Sequence Viewer  
  XP_004842413 (Get FASTA)   NCBI Sequence Viewer  
  XP_004842414 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000021114
RefSeq Acc Id: XP_004842412   ⟸   XM_004842355
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004842413   ⟸   XM_004842356
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004842414   ⟸   XM_004842357
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000015085 ENTREZGENE
Ensembl Transcript ENSHGLT00000021317 ENTREZGENE
NCBI Gene Igsf5 ENTREZGENE