Cdh11 (cadherin 11) - Rat Genome Database

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Gene: Cdh11 (cadherin 11) Heterocephalus glaber
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Symbol: Cdh11
Name: cadherin 11
RGD ID: 18915526
Description: ENCODES a protein that exhibits beta-catenin binding (inferred); cadherin binding (inferred); calcium ion binding (inferred); INVOLVED IN aortic valve formation (ortholog); cell-substrate adhesion (ortholog); corticospinal tract morphogenesis (ortholog); ASSOCIATED WITH Elsahy-Waters syndrome (ortholog); genetic disease (ortholog); Moebius syndrome (ortholog); FOUND IN adherens junction (inferred); catenin complex (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cadherin-11; cadherin-11 preproprotein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474621,345,310 - 21,503,822 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474621,345,304 - 21,501,542 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21452207   PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Cdh11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474621,345,310 - 21,503,822 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474621,345,304 - 21,501,542 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
CDH11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381664,943,753 - 65,123,744 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1664,943,753 - 65,126,112 (-)Ensemblhg38GRCh38
GRCh371664,977,656 - 65,155,966 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361663,538,184 - 63,713,420 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341663,538,185 - 63,713,420NCBI
Celera1649,484,273 - 49,659,540 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1650,850,425 - 51,025,603 (-)NCBIHuRef
CHM1_11666,388,690 - 66,563,938 (-)NCBICHM1_1
T2T-CHM13v2.01670,732,330 - 70,912,379 (-)NCBIT2T-CHM13v2.0
Cdh11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398103,358,727 - 103,512,125 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8103,358,727 - 103,512,274 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388102,632,095 - 102,785,493 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8102,632,095 - 102,785,642 (-)Ensemblmm10GRCm38
MGSCv378105,156,895 - 105,309,011 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368105,522,124 - 105,674,205 (-)NCBIMGSCv36mm8
Celera8106,868,993 - 107,021,043 (-)NCBICelera
Cytogenetic Map8D1NCBI
cM Map850.44NCBI
Cdh11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8192,152,961 - 2,312,140 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl192,154,840 - 2,312,140 (+)EnsemblGRCr8
mRatBN7.2192,148,447 - 2,305,754 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl192,148,458 - 2,304,272 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx192,138,285 - 2,294,837 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0192,905,067 - 3,061,627 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0192,180,332 - 2,336,874 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd192,162,371 - 2,319,681 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive195,970,353 - 6,127,659 (+)NCBILyon_Normotensive
Lyon_Hypertensive196,463,191 - 6,620,508 (+)NCBILyon_Hypertensive
F344_StmMcwi192,016,164 - 2,173,484 (+)NCBIF344_StmMcwi
Rnor_6.0192,391,181 - 2,551,245 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl192,393,059 - 2,551,245 (+)Ensemblrn6Rnor6.0
Rnor_5.0192,372,260 - 2,531,571 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4192,225,209 - 2,382,805 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera192,130,072 - 2,287,470 (+)NCBICelera
RGSC_v3.1192,380,123 - 2,380,442 (+)NCBI
Cytogenetic Map19p14NCBI
Cdh11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543321,612,297 - 21,687,281 (-)Ensembl
ChiLan1.0NW_00495543321,613,909 - 21,770,968 (-)NCBIChiLan1.0ChiLan1.0
CDH11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21874,445,794 - 74,623,499 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11680,357,007 - 80,533,939 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01645,261,269 - 45,436,597 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11664,367,862 - 64,543,189 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1664,367,862 - 64,475,028 (-)EnsemblpanPan2panpan1.1
CDH11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1583,977,267 - 84,122,712 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl584,038,317 - 84,122,110 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha584,033,015 - 84,079,562 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0584,409,502 - 84,557,344 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl584,411,628 - 84,557,341 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1584,232,531 - 84,381,087 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0583,924,826 - 84,072,777 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0584,557,786 - 84,705,744 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cdh11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934943,926,784 - 44,075,712 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647515,511,804 - 15,662,330 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647515,513,402 - 15,662,330 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl625,783,597 - 25,933,634 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1625,782,746 - 25,933,753 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2623,708,343 - 23,798,843 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDH11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1550,652,628 - 50,825,640 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl550,649,627 - 50,775,440 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604725,098,253 - 25,288,448 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdh11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11710,994,489 - 11,149,179 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000024256   ⟹   ENSHGLP00000024037
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474621,345,310 - 21,503,822 (+)Ensembl
RefSeq Acc Id: XM_004843113   ⟹   XP_004843170
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474621,345,304 - 21,501,542 (+)NCBI
RefSeq Acc Id: XM_004843114   ⟹   XP_004843171
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474621,345,304 - 21,501,542 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843170 (Get FASTA)   NCBI Sequence Viewer  
  XP_004843171 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAJ10654 (Get FASTA)   NCBI Sequence Viewer  
  EHA97761 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000024037
GenBank Protein JAN95922 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004843171   ⟸   XM_004843114
- UniProtKB: G5AL51 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004843170   ⟸   XM_004843113
- UniProtKB: G5AL51 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000024037   ⟸   ENSHGLT00000024256


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017133 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024256 ENTREZGENE
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Catenin-bd_sf UniProtKB/TrEMBL
KEGG Report hgl:101708158 UniProtKB/TrEMBL
NCBI Gene Cdh11 ENTREZGENE
PANTHER CADHERIN-11 UniProtKB/TrEMBL
  PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt G5AL51 ENTREZGENE, UniProtKB/TrEMBL