Exoc3l1 (exocyst complex component 3 like 1) - Rat Genome Database

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Gene: Exoc3l1 (exocyst complex component 3 like 1) Heterocephalus glaber
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Symbol: Exoc3l1
Name: exocyst complex component 3 like 1
RGD ID: 18907358
Description: ENCODES a protein that exhibits SNARE binding (inferred); INVOLVED IN peptide hormone secretion (ortholog); FOUND IN secretory granule (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: exocyst complex component 3-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,127,860 - 19,133,639 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474619,128,010 - 19,133,703 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Exoc3l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,127,860 - 19,133,639 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474619,128,010 - 19,133,703 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
EXOC3L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,184,379 - 67,190,136 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,184,314 - 67,190,242 (-)Ensemblhg38GRCh38
GRCh371667,218,282 - 67,224,039 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,775,783 - 65,781,608 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1651,726,514 - 51,732,339 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,091,458 - 53,097,283 (-)NCBIHuRef
CHM1_11668,625,609 - 68,631,434 (-)NCBICHM1_1
T2T-CHM13v2.01672,978,663 - 72,984,420 (-)NCBIT2T-CHM13v2.0
Exoc3l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,016,555 - 106,024,258 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,016,556 - 106,022,733 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388105,289,923 - 105,296,966 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,289,924 - 105,296,101 (-)Ensemblmm10GRCm38
MGSCv378107,813,824 - 107,819,998 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368108,179,053 - 108,185,227 (-)NCBIMGSCv36mm8
Celera8109,513,072 - 109,519,246 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Exoc3l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,076,761 - 50,084,278 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1950,076,266 - 50,082,422 (-)EnsemblGRCr8
mRatBN7.21933,166,836 - 33,174,371 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,166,837 - 33,172,486 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1939,982,441 - 39,988,090 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01940,635,760 - 40,641,409 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01942,924,667 - 42,930,324 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1943,864,056 - 43,869,786 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1941,988,909 - 41,994,639 (-)NCBILyon_Normotensive
Lyon_Hypertensive1943,862,231 - 43,867,961 (-)NCBILyon_Hypertensive
F344_StmMcwi1941,621,231 - 41,626,961 (-)NCBIF344_StmMcwi
Rnor_6.01937,245,269 - 37,252,789 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,245,270 - 37,250,919 (-)Ensemblrn6Rnor6.0
Rnor_5.01948,110,991 - 48,118,508 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41935,104,614 - 35,110,263 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1932,595,613 - 32,601,262 (-)NCBICelera
RGSC_v3.11935,109,531 - 35,116,033 (-)NCBI
Cytogenetic Map19q11NCBI
Exoc3l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554849,429,683 - 9,434,982 (+)Ensembl
ChiLan1.0NW_0049554849,429,578 - 9,434,982 (+)NCBIChiLan1.0ChiLan1.0
EXOC3L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,714,090 - 76,721,789 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11682,626,651 - 82,634,356 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01647,528,974 - 47,536,826 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11666,918,267 - 66,924,246 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,918,261 - 66,924,223 (-)EnsemblpanPan2panpan1.1
EXOC3L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,176,552 - 82,182,423 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,176,960 - 82,190,214 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha582,166,280 - 82,171,844 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0582,611,961 - 82,617,525 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,612,087 - 82,617,529 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,438,058 - 82,443,622 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0582,123,606 - 82,129,170 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,762,877 - 82,768,441 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Exoc3l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,925,287 - 41,932,256 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647517,656,858 - 17,662,301 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647517,656,858 - 17,662,856 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC3L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,827,350 - 27,832,452 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1627,827,268 - 27,832,553 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,116,657 - 25,121,948 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EXOC3L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,266,216 - 60,272,393 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl560,266,583 - 60,272,378 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604723,017,961 - 23,024,581 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exoc3l1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11725,016,534 - 25,032,641 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000014554   ⟹   ENSHGLP00000014410
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474619,127,860 - 19,133,639 (+)Ensembl
RefSeq Acc Id: XM_004843054   ⟹   XP_004843111
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,128,010 - 19,133,703 (+)NCBI
RefSeq Acc Id: XM_013071570   ⟹   XP_012927024
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,128,010 - 19,133,703 (+)NCBI
RefSeq Acc Id: XM_013071571   ⟹   XP_012927025
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,128,010 - 19,133,703 (+)NCBI
RefSeq Acc Id: XM_021256896   ⟹   XP_021112555
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,129,104 - 19,133,703 (+)NCBI
RefSeq Acc Id: XM_021256897   ⟹   XP_021112556
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,129,128 - 19,133,703 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843111 (Get FASTA)   NCBI Sequence Viewer  
  XP_012927024 (Get FASTA)   NCBI Sequence Viewer  
  XP_012927025 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112555 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112556 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000014410
RefSeq Acc Id: XP_004843111   ⟸   XM_004843054
- Peptide Label: isoform X2
- UniProtKB: A0AAX6P413 (UniProtKB/TrEMBL),   G5C649 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012927024   ⟸   XM_013071570
- Peptide Label: isoform X1
- UniProtKB: A0AAX6QWQ1 (UniProtKB/TrEMBL),   G5C649 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012927025   ⟸   XM_013071571
- Peptide Label: isoform X3
- UniProtKB: A0AAX6QVV1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112555   ⟸   XM_021256896
- Peptide Label: isoform X4
- UniProtKB: A0AAX6ST56 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112556   ⟸   XM_021256897
- Peptide Label: isoform X4
- UniProtKB: A0AAX6ST56 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000014410   ⟸   ENSHGLT00000014554


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010315 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014554 ENTREZGENE
Gene3D-CATH 1.10.357.50 UniProtKB/TrEMBL
  Exocyst complex component Sec6, C-terminal domain UniProtKB/TrEMBL
InterPro EXOC3/Sec6 UniProtKB/TrEMBL
  EXOC3/Sec6_C UniProtKB/TrEMBL
KEGG Report hgl:101718873 UniProtKB/TrEMBL
NCBI Gene Exoc3l1 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 3-LIKE PROTEIN UniProtKB/TrEMBL
  EXOCYST COMPLEX COMPONENT SEC6-RELATED UniProtKB/TrEMBL
Pfam Sec6 UniProtKB/TrEMBL
UniProt A0AAX6P413 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QVV1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6QWQ1 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6ST56 ENTREZGENE, UniProtKB/TrEMBL
  G5C649 ENTREZGENE, UniProtKB/TrEMBL