Ddx19b (DEAD-box helicase 19B) - Rat Genome Database

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Gene: Ddx19b (DEAD-box helicase 19B) Heterocephalus glaber
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Symbol: Ddx19b
Name: DEAD-box helicase 19B
RGD ID: 18905006
Description: ENCODES a protein that exhibits ATP binding (inferred); helicase activity (inferred); hydrolase activity (inferred); PARTICIPATES IN NXF1-NXT1 export pathway; FOUND IN nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ATP-dependent RNA helicase DDX19B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474612,569,331 - 12,587,821 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474612,569,308 - 12,592,168 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ddx19b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474612,569,331 - 12,587,821 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474612,569,308 - 12,592,168 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
DDX19B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381670,289,767 - 70,335,305 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1670,289,663 - 70,335,305 (+)Ensemblhg38GRCh38
GRCh371670,323,670 - 70,369,208 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361668,890,573 - 68,925,232 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341668,890,598 - 68,925,230NCBI
Celera1655,160,454 - 55,195,108 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1656,156,341 - 56,200,270 (+)NCBIHuRef
CHM1_11671,731,134 - 71,775,217 (+)NCBICHM1_1
T2T-CHM13v2.01676,100,775 - 76,146,326 (+)NCBIT2T-CHM13v2.0
Ddx19b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398111,729,818 - 111,758,383 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8111,729,820 - 111,758,383 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388111,003,186 - 111,031,751 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,003,188 - 111,031,751 (-)Ensemblmm10GRCm38
MGSCv378113,527,088 - 113,551,664 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368113,889,863 - 113,914,439 (-)NCBIMGSCv36mm8
Celera8115,227,150 - 115,251,693 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.88NCBI
Ddx19b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81955,877,567 - 55,910,134 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1955,877,567 - 55,906,745 (-)EnsemblGRCr8
mRatBN7.21938,968,215 - 38,998,907 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1938,968,215 - 38,997,259 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1945,772,703 - 45,798,431 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01946,426,046 - 46,451,774 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01948,736,974 - 48,762,706 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1949,654,137 - 49,679,857 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1947,777,633 - 47,803,353 (-)NCBILyon_Normotensive
Lyon_Hypertensive1949,652,394 - 49,678,114 (-)NCBILyon_Hypertensive
F344_StmMcwi1947,408,323 - 47,434,074 (-)NCBIF344_StmMcwi
Rnor_6.01943,217,199 - 43,246,196 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,217,161 - 43,275,287 (+)Ensemblrn6Rnor6.0
Rnor_5.01954,067,897 - 54,072,633 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.01954,045,135 - 54,061,405 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41940,924,875 - 40,947,452 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1938,360,365 - 38,385,589 (-)NCBICelera
Cytogenetic Map19q12NCBI
Ddx19b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554843,120,480 - 3,137,917 (+)Ensembl
ChiLan1.0NW_0049554843,120,480 - 3,137,917 (+)NCBIChiLan1.0ChiLan1.0
LOC100984626
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21883,831,985 - 83,871,412 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11689,760,567 - 89,806,986 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01654,683,291 - 54,718,133 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11670,131,115 - 70,167,548 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1670,126,833 - 70,167,548 (+)EnsemblpanPan2panpan1.1
DDX19B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1576,314,675 - 76,336,318 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl576,314,725 - 76,364,587 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha576,276,509 - 76,298,134 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0576,751,096 - 76,772,739 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl576,725,513 - 76,802,090 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1576,573,320 - 76,594,990 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0576,396,617 - 76,418,072 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0576,888,426 - 76,910,065 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
DDX19B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl613,325,351 - 13,359,459 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1613,328,241 - 13,358,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2613,239,713 - 13,271,120 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103233156
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1553,438,552 - 53,480,623 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl553,443,037 - 53,481,987 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604716,225,728 - 16,268,284 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000014072   ⟹   ENSHGLP00000013929
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474612,569,331 - 12,587,217 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000014073   ⟹   ENSHGLP00000013930
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474612,572,318 - 12,587,821 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000014074   ⟹   ENSHGLP00000013931
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474612,572,458 - 12,587,217 (+)Ensembl
RefSeq Acc Id: XM_004842873   ⟹   XP_004842930
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474612,572,317 - 12,592,168 (+)NCBI
RefSeq Acc Id: XM_021256709   ⟹   XP_021112368
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474612,569,308 - 12,592,168 (+)NCBI
RefSeq Acc Id: XM_021256710   ⟹   XP_021112369
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474612,572,329 - 12,592,168 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004842930 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112368 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112369 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04673 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013929
  ENSHGLP00000013930
RefSeq Acc Id: XP_021112368   ⟸   XM_021256709
- Peptide Label: isoform X1
- UniProtKB: G5B5W2 (UniProtKB/TrEMBL),   A0AAX6SUL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004842930   ⟸   XM_004842873
- Peptide Label: isoform X2
- UniProtKB: A0A0P6JB98 (UniProtKB/TrEMBL),   G5B5W2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112369   ⟸   XM_021256710
- Peptide Label: isoform X3
- UniProtKB: A0AAX6SUD8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000013929   ⟸   ENSHGLT00000014072
Ensembl Acc Id: ENSHGLP00000013930   ⟸   ENSHGLT00000014073
Ensembl Acc Id: ENSHGLP00000013931   ⟸   ENSHGLT00000014074


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009955 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000014072 ENTREZGENE
  ENSHGLT00000014073 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  6.10.250.2170 UniProtKB/TrEMBL
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RNA_helicase_DEAD_Q_motif UniProtKB/TrEMBL
KEGG Report hgl:101720257 UniProtKB/TrEMBL
NCBI Gene Ddx19b ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE DBP3 UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
PROSITE HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  Q_MOTIF UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A0P6JB98 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SUD8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6SUL8 ENTREZGENE, UniProtKB/TrEMBL
  G5B5W2 ENTREZGENE, UniProtKB/TrEMBL