Gabarapl2 (GABA type A receptor associated protein like 2) - Rat Genome Database

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Gene: Gabarapl2 (GABA type A receptor associated protein like 2) Heterocephalus glaber
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Symbol: Gabarapl2
Name: GABA type A receptor associated protein like 2
RGD ID: 18901269
Description: ENCODES a protein that exhibits phosphatidylethanolamine binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); negative regulation of proteasomal protein catabolic process (ortholog); protein localization to endoplasmic reticulum (ortholog); PARTICIPATES IN autophagy pathway; FOUND IN autophagosome membrane (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: gamma-aminobutyric acid receptor-associated protein-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474611,393,439 - 11,405,126 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474611,393,439 - 11,405,152 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Gabarapl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474611,393,439 - 11,405,126 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474611,393,439 - 11,405,152 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
GABARAPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381675,566,379 - 75,577,881 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1675,566,375 - 75,577,881 (+)Ensemblhg38GRCh38
GRCh371675,600,277 - 75,611,779 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361674,157,750 - 74,169,280 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341674,157,749 - 74,169,279NCBI
Celera1659,894,551 - 59,906,124 (+)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1661,353,919 - 61,365,449 (+)NCBIHuRef
CHM1_11677,012,617 - 77,024,147 (+)NCBICHM1_1
T2T-CHM13v2.01681,614,626 - 81,626,171 (+)NCBIT2T-CHM13v2.0
Gabarapl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398112,667,335 - 112,679,547 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8112,667,335 - 112,680,244 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388111,940,703 - 111,952,915 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,940,703 - 111,953,612 (+)Ensemblmm10GRCm38
MGSCv378114,464,618 - 114,476,480 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368114,827,395 - 114,842,055 (+)NCBIMGSCv36mm8
Celera8116,169,489 - 116,181,347 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map858.19NCBI
Gabarapl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81956,819,826 - 56,830,662 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1956,819,791 - 56,830,660 (+)EnsemblGRCr8
mRatBN7.21939,910,572 - 39,921,408 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1939,910,534 - 39,924,628 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1946,774,406 - 46,785,021 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01947,427,736 - 47,438,351 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01949,673,177 - 49,684,013 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1950,655,817 - 50,666,432 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1948,779,280 - 48,789,895 (+)NCBILyon_Normotensive
Lyon_Hypertensive1950,654,061 - 50,664,676 (+)NCBILyon_Hypertensive
F344_StmMcwi1948,347,091 - 48,357,804 (+)NCBIF344_StmMcwi
Rnor_6.01944,164,935 - 44,175,771 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1944,164,935 - 44,175,770 (+)Ensemblrn6Rnor6.0
Rnor_5.01954,972,028 - 54,982,864 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41941,880,238 - 41,891,074 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1939,271,261 - 39,281,863 (+)NCBICelera
RGSC_v3.11941,885,118 - 41,895,954 (+)NCBI
Cytogenetic Map19q12NCBI
Gabarapl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554841,991,020 - 2,004,925 (-)Ensembl
ChiLan1.0NW_0049554841,991,020 - 2,004,925 (-)NCBIChiLan1.0ChiLan1.0
GABARAPL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21885,284,079 - 85,295,639 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11691,206,742 - 91,218,301 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01656,135,482 - 56,147,046 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11675,483,459 - 75,495,019 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1675,483,459 - 75,495,019 (+)EnsemblpanPan2panpan1.1
GABARAPL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1575,230,214 - 75,240,724 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl575,230,243 - 75,240,730 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha575,207,568 - 75,218,596 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0575,544,321 - 75,555,339 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl575,544,322 - 75,554,830 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1575,480,287 - 75,491,305 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0575,315,531 - 75,326,538 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0575,806,854 - 75,817,870 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gabarapl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934935,339,865 - 35,350,864 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647524,238,209 - 24,249,557 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647524,238,262 - 24,249,249 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABARAPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl612,107,422 - 12,132,991 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1612,122,219 - 12,132,986 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2611,963,183 - 11,973,930 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GABARAPL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1561,053,283 - 61,078,675 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl561,053,262 - 61,066,083 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604714,980,713 - 15,005,010 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabarapl2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11731,632,346 - 31,633,514 (+)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000013743   ⟹   ENSHGLP00000013602
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474611,393,439 - 11,405,126 (-)Ensembl
RefSeq Acc Id: XM_004842829   ⟹   XP_004842886
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474611,393,439 - 11,405,152 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004842886 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000013602
GenBank Protein JAN96817 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004842886   ⟸   XM_004842829
- UniProtKB: G5B5Y4 (UniProtKB/TrEMBL),   A0AAX6P3J5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000013602   ⟸   ENSHGLT00000013743


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009724 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000013743 ENTREZGENE
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/TrEMBL
InterPro Atg8-like UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
KEGG Report hgl:101706208 UniProtKB/TrEMBL
NCBI Gene Gabarapl2 ENTREZGENE
PANTHER PTHR10969 UniProtKB/TrEMBL
Pfam Atg8 UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A0P6J366_HETGA UniProtKB/TrEMBL
  A0AAX6P3J5 ENTREZGENE, UniProtKB/TrEMBL
  G5B5Y4 ENTREZGENE, UniProtKB/TrEMBL