Gabarapl2 (GABA type A receptor associated protein like 2) - Rat Genome Database

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Gene: Gabarapl2 (GABA type A receptor associated protein like 2) Chinchilla lanigera
Analyze
Symbol: Gabarapl2
Name: GABA type A receptor associated protein like 2
RGD ID: 8810648
Description: ENCODES a protein that exhibits phosphatidylethanolamine binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN negative regulation of proteasomal protein catabolic process (ortholog); protein localization to endoplasmic reticulum (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH genetic disease (ortholog); Joubert syndrome 20 (ortholog); FOUND IN autophagosome (ortholog); autophagosome membrane (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GABA(A) receptor-associated protein like 2; GABA(A) receptor-associated protein-like 2; gamma-aminobutyric acid receptor-associated protein-like 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554841,991,020 - 2,004,925 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554841,991,020 - 2,004,925 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Gabarapl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554841,991,020 - 2,004,925 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554841,991,020 - 2,004,925 (-)NCBIChiLan1.0ChiLan1.0
GABARAPL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381675,566,379 - 75,577,881 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1675,566,375 - 75,577,881 (+)EnsemblGRCh38hg38GRCh38
GRCh371675,600,277 - 75,611,779 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361674,157,750 - 74,169,280 (+)NCBINCBI36Build 36hg18NCBI36
Build 341674,157,749 - 74,169,279NCBI
Celera1659,894,551 - 59,906,124 (+)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1661,353,919 - 61,365,449 (+)NCBIHuRef
CHM1_11677,012,617 - 77,024,147 (+)NCBICHM1_1
T2T-CHM13v2.01681,614,626 - 81,626,171 (+)NCBIT2T-CHM13v2.0
Gabarapl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398112,667,335 - 112,679,547 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8112,667,335 - 112,680,244 (+)EnsemblGRCm39 Ensembl
GRCm388111,940,703 - 111,952,915 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,940,703 - 111,953,612 (+)EnsemblGRCm38mm10GRCm38
MGSCv378114,464,618 - 114,476,480 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368114,827,395 - 114,842,055 (+)NCBIMGSCv36mm8
Celera8116,169,489 - 116,181,347 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map858.19NCBI
Gabarapl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81956,819,826 - 56,830,662 (+)NCBIGRCr8
mRatBN7.21939,910,572 - 39,921,408 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl889,246,195 - 89,247,139 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1939,910,534 - 39,924,628 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1946,774,406 - 46,785,021 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01947,427,736 - 47,438,351 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01949,673,177 - 49,684,013 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01944,164,935 - 44,175,771 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1944,164,935 - 44,175,770 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,972,028 - 54,982,864 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,880,238 - 41,891,074 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11941,885,118 - 41,895,954 (+)NCBI
Celera1939,271,261 - 39,281,863 (+)NCBICelera
Cytogenetic Map19q12NCBI
GABARAPL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21885,284,079 - 85,295,639 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11691,206,742 - 91,218,301 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01656,135,482 - 56,147,046 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11675,483,459 - 75,495,019 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1675,483,459 - 75,495,019 (+)Ensemblpanpan1.1panPan2
GABARAPL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1575,230,214 - 75,240,724 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl575,230,243 - 75,240,730 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha575,207,568 - 75,218,596 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0575,544,321 - 75,555,339 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl575,544,322 - 75,554,830 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1575,480,287 - 75,491,305 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0575,315,531 - 75,326,538 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0575,806,854 - 75,817,870 (-)NCBIUU_Cfam_GSD_1.0
Gabarapl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934935,339,865 - 35,350,864 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647524,238,209 - 24,249,557 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647524,238,262 - 24,249,249 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABARAPL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl612,107,422 - 12,132,991 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1612,122,219 - 12,132,986 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2611,963,183 - 11,973,930 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GABARAPL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1561,053,283 - 61,078,675 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl561,053,262 - 61,066,083 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604714,980,713 - 15,005,010 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabarapl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474611,393,439 - 11,405,126 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474611,393,439 - 11,405,152 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000010488   ⟹   ENSCLAP00000010358
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554841,991,020 - 2,004,925 (-)Ensembl
RefSeq Acc Id: XM_005403439   ⟹   XP_005403496
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554841,991,020 - 2,004,925 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005403496 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000010358
  ENSCLAP00000010358.1
RefSeq Acc Id: XP_005403496   ⟸   XM_005403439
- UniProtKB: A0A8C2V5L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000010358   ⟸   ENSCLAT00000010488


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007159 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000010488 ENTREZGENE
  ENSCLAT00000010488.1 UniProtKB/TrEMBL
InterPro Atg8-like UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Gabarapl2 ENTREZGENE
PANTHER GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 2 UniProtKB/TrEMBL
  PTHR10969 UniProtKB/TrEMBL
Pfam ATG8 UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/TrEMBL
UniProt A0A8C2V5L5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Gabarapl2  GABA type A receptor associated protein like 2    GABA(A) receptor-associated protein like 2  Symbol and/or name change 5135510 APPROVED
2015-08-25 Gabarapl2  GABA(A) receptor-associated protein like 2    GABA(A) receptor-associated protein-like 2  Symbol and/or name change 5135510 APPROVED