Slc38a7 (solute carrier family 38 member 7) - Rat Genome Database

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Gene: Slc38a7 (solute carrier family 38 member 7) Heterocephalus glaber
Analyze
Symbol: Slc38a7
Name: solute carrier family 38 member 7
RGD ID: 18901026
Description: ENCODES a protein that exhibits L-asparagine:sodium symporter activity (ortholog); L-glutamine:sodium symporter activity (ortholog); INVOLVED IN amino acid transmembrane transport (inferred); amino acid transport (inferred); asparagine transport (inferred); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN neuronal cell body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Putative sodium-coupled neutral amino acid transporter 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474627,596,125 - 27,611,022 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474627,596,061 - 27,610,214 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Slc38a7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474627,596,125 - 27,611,022 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474627,596,061 - 27,610,214 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
SLC38A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381658,665,109 - 58,684,770 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1658,663,015 - 58,684,770 (-)Ensemblhg38GRCh38
GRCh371658,699,013 - 58,718,674 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361657,257,799 - 57,276,175 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1643,199,597 - 43,219,111 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1644,565,692 - 44,584,050 (-)NCBIHuRef
CHM1_11660,107,195 - 60,125,575 (-)NCBICHM1_1
T2T-CHM13v2.01664,457,615 - 64,477,277 (-)NCBIT2T-CHM13v2.0
Slc38a7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39896,562,548 - 96,580,205 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl896,562,548 - 96,580,167 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38895,835,920 - 95,853,577 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,835,920 - 95,853,539 (-)Ensemblmm10GRCm38
MGSCv37898,359,823 - 98,377,391 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36898,725,052 - 98,742,620 (-)NCBIMGSCv36mm8
Celera8100,146,714 - 100,164,200 (-)NCBICelera
Cytogenetic Map8D1NCBI
cM Map847.67NCBI
Slc38a7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,215,336 - 9,231,592 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl199,215,383 - 9,231,589 (+)EnsemblGRCr8
mRatBN7.2199,209,203 - 9,225,472 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,209,257 - 9,225,454 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx199,177,964 - 9,192,877 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0199,944,782 - 9,959,695 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,231,088 - 9,246,002 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd199,207,086 - 9,223,381 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1913,019,011 - 13,035,306 (+)NCBILyon_Normotensive
Lyon_Hypertensive1913,511,824 - 13,528,119 (+)NCBILyon_Hypertensive
F344_StmMcwi199,060,604 - 9,076,899 (+)NCBIF344_StmMcwi
Rnor_6.0199,622,594 - 9,638,221 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl199,622,611 - 9,638,222 (+)Ensemblrn6Rnor6.0
Rnor_5.0199,607,716 - 9,623,404 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4199,664,603 - 9,681,055 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera199,107,765 - 9,121,788 (+)NCBICelera
RGSC_v3.1199,670,000 - 9,685,871 (+)NCBI
Cytogenetic Map19p13NCBI
Slc38a7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543316,086,510 - 16,101,184 (-)Ensembl
ChiLan1.0NW_00495543316,086,747 - 16,100,185 (-)NCBIChiLan1.0ChiLan1.0
SLC38A7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21868,144,012 - 68,168,045 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11674,067,639 - 74,091,676 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01638,949,484 - 38,973,523 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11658,076,825 - 58,098,972 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1658,076,840 - 58,098,897 (-)EnsemblpanPan2panpan1.1
SLC38A7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1257,998,908 - 58,011,288 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl257,999,419 - 58,009,461 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha254,630,120 - 54,642,500 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0258,539,794 - 58,552,185 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl258,539,861 - 58,552,185 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1255,366,877 - 55,379,276 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,371,630 - 56,384,019 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,269,398 - 57,281,818 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Slc38a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,158,292 - 49,180,280 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647510,416,557 - 10,430,713 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647510,408,880 - 10,430,689 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl620,337,137 - 20,401,684 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1620,387,113 - 20,401,733 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC38A7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1544,602,899 - 44,625,094 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl544,601,662 - 44,625,106 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604731,540,351 - 31,564,619 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1172,652,784 - 2,667,871 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000016991   ⟹   ENSHGLP00000016820
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474627,596,125 - 27,611,022 (+)Ensembl
RefSeq Acc Id: XM_004843121   ⟹   XP_004843178
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474627,596,061 - 27,610,214 (+)NCBI
RefSeq Acc Id: XM_013071587   ⟹   XP_012927041
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474627,596,088 - 27,610,214 (+)NCBI
RefSeq Acc Id: XM_021256955   ⟹   XP_021112614
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474627,596,145 - 27,610,214 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843178 (Get FASTA)   NCBI Sequence Viewer  
  XP_012927041 (Get FASTA)   NCBI Sequence Viewer  
  XP_021112614 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB01269 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000016820
GenBank Protein JAO01585 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004843178   ⟸   XM_004843121
- UniProtKB: A0A0P6JDS9 (UniProtKB/TrEMBL),   G5AW58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012927041   ⟸   XM_013071587
- UniProtKB: A0A0P6JDS9 (UniProtKB/TrEMBL),   G5AW58 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021112614   ⟸   XM_021256955
- UniProtKB: A0A0P6JDS9 (UniProtKB/TrEMBL),   G5AW58 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000016820   ⟸   ENSHGLT00000016991


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012028 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000016991 ENTREZGENE
InterPro AA_transpt_TM UniProtKB/TrEMBL
KEGG Report hgl:101713062 UniProtKB/TrEMBL
NCBI Gene Slc38a7 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 7-RELATED UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/TrEMBL
UniProt A0A0P6JDS9 ENTREZGENE, UniProtKB/TrEMBL
  G5AW58 ENTREZGENE, UniProtKB/TrEMBL