SLC38A7 (solute carrier family 38 member 7) - Rat Genome Database

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Gene: SLC38A7 (solute carrier family 38 member 7) Homo sapiens
Analyze
Symbol: SLC38A7
Name: solute carrier family 38 member 7
RGD ID: 1602480
HGNC Page HGNC
Description: Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport and sodium ion transport. Predicted to be located in axon and neuronal cell body; INTERACTS WITH 3-isobutyl-1-methyl-7H-xanthine; aflatoxin B1; aflatoxin B2.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: amino acid transporter; FLJ10815; FLJ12724; putative sodium-coupled neutral amino acid transporter 7; SNAT7; solute carrier family 38, member 7
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1658,665,109 - 58,684,770 (-)EnsemblGRCh38hg38GRCh38
GRCh381658,665,109 - 58,684,770 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371658,699,013 - 58,718,674 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361657,257,799 - 57,276,175 (-)NCBINCBI36hg18NCBI36
Celera1643,199,597 - 43,219,111 (-)NCBI
Cytogenetic Map16q21NCBI
HuRef1644,565,692 - 44,584,050 (-)NCBIHuRef
CHM1_11660,107,195 - 60,125,575 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (HEP)

References

Additional References at PubMed
PMID:8125298   PMID:12477932   PMID:14702039   PMID:19305408   PMID:21511949   PMID:21873635   PMID:23506890   PMID:24623722   PMID:25056061   PMID:25416956   PMID:28416685   PMID:28514442  
PMID:30648747   PMID:32296183  


Genomics

Comparative Map Data
SLC38A7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1658,665,109 - 58,684,770 (-)EnsemblGRCh38hg38GRCh38
GRCh381658,665,109 - 58,684,770 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371658,699,013 - 58,718,674 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361657,257,799 - 57,276,175 (-)NCBINCBI36hg18NCBI36
Celera1643,199,597 - 43,219,111 (-)NCBI
Cytogenetic Map16q21NCBI
HuRef1644,565,692 - 44,584,050 (-)NCBIHuRef
CHM1_11660,107,195 - 60,125,575 (-)NCBICHM1_1
Slc38a7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39896,562,548 - 96,580,206 (-)NCBIGRCm39mm39
GRCm39 Ensembl896,562,548 - 96,580,167 (-)Ensembl
GRCm38895,835,920 - 95,853,577 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,835,920 - 95,853,539 (-)EnsemblGRCm38mm10GRCm38
MGSCv37898,359,823 - 98,377,391 (-)NCBIGRCm37mm9NCBIm37
MGSCv36898,725,052 - 98,742,620 (-)NCBImm8
Celera8100,146,714 - 100,164,200 (-)NCBICelera
Cytogenetic Map8D1NCBI
Slc38a7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2199,209,203 - 9,225,472 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl199,209,257 - 9,225,454 (+)Ensembl
Rnor_6.0199,622,594 - 9,638,221 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl199,622,611 - 9,638,222 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0199,607,716 - 9,623,404 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4199,664,603 - 9,681,055 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1199,670,000 - 9,685,871 (+)NCBI
Celera199,107,765 - 9,121,788 (+)NCBICelera
Cytogenetic Map19p13NCBI
Slc38a7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543316,086,510 - 16,101,184 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543316,086,747 - 16,100,185 (-)NCBIChiLan1.0ChiLan1.0
SLC38A7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11658,076,825 - 58,098,972 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1658,076,840 - 58,098,897 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01638,949,484 - 38,973,523 (-)NCBIMhudiblu_PPA_v0panPan3
SLC38A7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1257,998,908 - 58,011,288 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl257,999,419 - 58,009,461 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha254,630,120 - 54,642,500 (+)NCBI
ROS_Cfam_1.0258,539,794 - 58,552,185 (+)NCBI
UMICH_Zoey_3.1255,366,877 - 55,379,276 (+)NCBI
UNSW_CanFamBas_1.0256,371,630 - 56,384,019 (+)NCBI
UU_Cfam_GSD_1.0257,269,398 - 57,281,818 (+)NCBI
Slc38a7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,158,292 - 49,180,280 (+)NCBI
SpeTri2.0NW_00493647510,408,880 - 10,430,689 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl620,337,137 - 20,401,684 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1620,387,113 - 20,401,733 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC38A7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1544,602,899 - 44,625,094 (-)NCBI
Vero_WHO_p1.0NW_02366604731,540,351 - 31,564,619 (+)NCBI
Slc38a7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474627,596,061 - 27,610,214 (+)NCBI

Position Markers
RH98256  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371658,700,396 - 58,700,526UniSTSGRCh37
Build 361657,257,897 - 57,258,027RGDNCBI36
Celera1643,199,695 - 43,199,825RGD
Cytogenetic Map16q21UniSTS
HuRef1644,565,790 - 44,565,920UniSTS
GeneMap99-GB4 RH Map16370.39UniSTS
RH80140  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371658,700,305 - 58,700,527UniSTSGRCh37
Build 361657,257,806 - 57,258,028RGDNCBI36
Celera1643,199,604 - 43,199,826RGD
Cytogenetic Map16q21UniSTS
HuRef1644,565,699 - 44,565,921UniSTS
GeneMap99-GB4 RH Map16371.46UniSTS
D11S2921  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map14q13.2UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map10q24.33UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic MapXp11.4-p11.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map1q24.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map18pter-p11.3UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map4q34.1UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map7q21.12UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map6p22UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map12p11UniSTS
Cytogenetic Map17q21-q22UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11p13-p12UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map2q12.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map5q12-q13UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map12q13-q14UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map15q15-q21.1UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic MapXq25-q26.3UniSTS
Cytogenetic Map10q22.3UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map18p11.32UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map4p13UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map9p24.1-p23UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map1q42.1-q43UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map20q12-q13.12UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map6q25.1-q26UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map12p11.22UniSTS
Cytogenetic Map17q23.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map9p11UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map11p11.11UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map15q22-q23UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map15q22-qterUniSTS
Cytogenetic Map10q25UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map5p15.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map19p13.2-cenUniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic Map9q33UniSTS
Cytogenetic Map1p36-p35UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map4q25-q27UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic MapXq26.2UniSTS
Cytogenetic Map8q13.2UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map5q23.1UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic MapXq21.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map5p13.1-p12UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map6q14.3-q16.1UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map6q25UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map6q14.3UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map17q21.1-q21.3UniSTS
Cytogenetic Map6q11.1UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map12p13.2-p12.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map10q24-q25UniSTS
Cytogenetic Map7p11.1UniSTS
Cytogenetic Map14q11.2-q21UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map10q23.31UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map5p14.3UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map9p13.1UniSTS
Cytogenetic Map9q34.13UniSTS
D1S3688  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXq13UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map13q11UniSTS
Cytogenetic MapXp11.22UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map16q21UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6276
Count of miRNA genes:1199
Interacting mature miRNAs:1517
Transcripts:ENST00000219320, ENST00000562149, ENST00000562397, ENST00000563196, ENST00000564010, ENST00000564100, ENST00000564391, ENST00000564720, ENST00000564964, ENST00000565785, ENST00000566598, ENST00000566953, ENST00000567930, ENST00000569209, ENST00000570101, ENST00000570214
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 293 205 1130 161 300 124 597 272 994 164 761 1057 48 203 171 3
Low 2146 2763 596 463 1628 341 3760 1923 2740 255 699 556 127 1 1001 2617 3 2
Below cutoff 23 23 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001308384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001369611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_161424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001751952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC010287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI201677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK022786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK222932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK299424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX877274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC001961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC063399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR457236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY021779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000219320   ⟹   ENSP00000219320
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,665,109 - 58,684,770 (-)Ensembl
RefSeq Acc Id: ENST00000562149
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,671,572 - 58,684,743 (-)Ensembl
RefSeq Acc Id: ENST00000562397   ⟹   ENSP00000455490
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,678,743 - 58,684,743 (-)Ensembl
RefSeq Acc Id: ENST00000563196   ⟹   ENSP00000454734
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,678,881 - 58,684,770 (-)Ensembl
RefSeq Acc Id: ENST00000564010   ⟹   ENSP00000455362
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,667,362 - 58,684,770 (-)Ensembl
RefSeq Acc Id: ENST00000564100   ⟹   ENSP00000454325
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,666,372 - 58,684,707 (-)Ensembl
RefSeq Acc Id: ENST00000564391   ⟹   ENSP00000457462
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,679,610 - 58,684,053 (-)Ensembl
RefSeq Acc Id: ENST00000564720
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,681,388 - 58,684,770 (-)Ensembl
RefSeq Acc Id: ENST00000564964
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,683,666 - 58,684,770 (-)Ensembl
RefSeq Acc Id: ENST00000565785   ⟹   ENSP00000457988
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,672,096 - 58,678,763 (-)Ensembl
RefSeq Acc Id: ENST00000566598   ⟹   ENSP00000455119
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,667,278 - 58,684,181 (-)Ensembl
RefSeq Acc Id: ENST00000566953
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,667,383 - 58,684,110 (-)Ensembl
RefSeq Acc Id: ENST00000567930
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,681,516 - 58,684,323 (-)Ensembl
RefSeq Acc Id: ENST00000569209
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,672,030 - 58,677,577 (-)Ensembl
RefSeq Acc Id: ENST00000570101   ⟹   ENSP00000454646
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,665,109 - 58,684,723 (-)Ensembl
RefSeq Acc Id: ENST00000570214   ⟹   ENSP00000456464
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl1658,675,944 - 58,684,770 (-)Ensembl
RefSeq Acc Id: NM_001308384   ⟹   NP_001295313
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,665,109 - 58,684,331 (-)NCBI
CHM1_11660,105,910 - 60,125,512 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001369608   ⟹   NP_001356537
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,665,109 - 58,684,770 (-)NCBI
RefSeq Acc Id: NM_001369609   ⟹   NP_001356538
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,665,109 - 58,684,770 (-)NCBI
RefSeq Acc Id: NM_001369610   ⟹   NP_001356539
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,665,109 - 58,684,770 (-)NCBI
RefSeq Acc Id: NM_001369611   ⟹   NP_001356540
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,665,109 - 58,684,331 (-)NCBI
RefSeq Acc Id: NM_018231   ⟹   NP_060701
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,665,109 - 58,684,770 (-)NCBI
GRCh371658,700,298 - 58,718,674 (-)NCBI
Build 361657,257,799 - 57,276,175 (-)NCBI Archive
Celera1643,199,597 - 43,219,111 (-)RGD
HuRef1644,565,692 - 44,584,050 (-)RGD
CHM1_11660,105,910 - 60,125,582 (-)NCBI
Sequence:
RefSeq Acc Id: NR_161424
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,665,109 - 58,684,770 (-)NCBI
RefSeq Acc Id: XM_017023395   ⟹   XP_016878884
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,665,109 - 58,684,770 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017023396   ⟹   XP_016878885
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,665,109 - 58,684,770 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017023398   ⟹   XP_016878887
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,675,536 - 58,684,770 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017023399   ⟹   XP_016878888
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,675,989 - 58,684,770 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001751952
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,665,109 - 58,684,770 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_060701   ⟸   NM_018231
- Peptide Label: isoform 1
- UniProtKB: Q9NVC3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001295313   ⟸   NM_001308384
- Peptide Label: isoform 2
- UniProtKB: H3BMC5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_016878885   ⟸   XM_017023396
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_016878884   ⟸   XM_017023395
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_016878887   ⟸   XM_017023398
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_016878888   ⟸   XM_017023399
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001356538   ⟸   NM_001369609
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001356537   ⟸   NM_001369608
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001356539   ⟸   NM_001369610
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001356540   ⟸   NM_001369611
- Peptide Label: isoform 1
RefSeq Acc Id: ENSP00000456464   ⟸   ENST00000570214
RefSeq Acc Id: ENSP00000454646   ⟸   ENST00000570101
RefSeq Acc Id: ENSP00000219320   ⟸   ENST00000219320
RefSeq Acc Id: ENSP00000455490   ⟸   ENST00000562397
RefSeq Acc Id: ENSP00000454734   ⟸   ENST00000563196
RefSeq Acc Id: ENSP00000455362   ⟸   ENST00000564010
RefSeq Acc Id: ENSP00000457462   ⟸   ENST00000564391
RefSeq Acc Id: ENSP00000454325   ⟸   ENST00000564100
RefSeq Acc Id: ENSP00000457988   ⟸   ENST00000565785
RefSeq Acc Id: ENSP00000455119   ⟸   ENST00000566598
Protein Domains
Aa_trans

Promoters
RGD ID:6793472
Promoter ID:HG_KWN:23948
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000257389,   UC002EOB.1,   UC002EOC.1,   UC002EOE.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361657,275,901 - 57,276,401 (-)MPROMDB
RGD ID:7232403
Promoter ID:EPDNEW_H21946
Type:initiation region
Name:SLC38A7_1
Description:solute carrier family 38 member 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381658,684,743 - 58,684,803EPDNEW

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 16q13-22.2(chr16:56883592-71279975)x3 copy number gain See cases [RCV000052405] Chr16:56883592..71279975 [GRCh38]
Chr16:56917504..71313878 [GRCh37]
Chr16:55475005..69871379 [NCBI36]
Chr16:16q13-22.2
pathogenic
GRCh38/hg38 16q21-23.1(chr16:58456122-74708723)x3 copy number gain See cases [RCV000052408] Chr16:58456122..74708723 [GRCh38]
Chr16:58490026..74742621 [GRCh37]
Chr16:57047527..73300122 [NCBI36]
Chr16:16q21-23.1
pathogenic
GRCh38/hg38 16q12.2-21(chr16:55457477-63841622)x1 copy number loss See cases [RCV000133738] Chr16:55457477..63841622 [GRCh38]
Chr16:55491389..63875526 [GRCh37]
Chr16:54048890..62433027 [NCBI36]
Chr16:16q12.2-21
pathogenic
GRCh38/hg38 16q12.2-24.3(chr16:52899183-90088654)x3 copy number gain See cases [RCV000143425] Chr16:52899183..90088654 [GRCh38]
Chr16:52933095..90155062 [GRCh37]
Chr16:51490596..88682563 [NCBI36]
Chr16:16q12.2-24.3
pathogenic
GRCh38/hg38 16q12.1-22.1(chr16:49685521-68401712)x3 copy number gain See cases [RCV000143752] Chr16:49685521..68401712 [GRCh38]
Chr16:49719432..68435615 [GRCh37]
Chr16:48276933..66993116 [NCBI36]
Chr16:16q12.1-22.1
pathogenic
GRCh37/hg19 16q11.2-24.3(chr16:46615804-90142285)x1 copy number loss Ductal breast carcinoma [RCV000207138] Chr16:46615804..90142285 [GRCh37]
Chr16:16q11.2-24.3
uncertain significance
GRCh37/hg19 16q12.2-22.2(chr16:55359026-70884455)x1 copy number loss Ductal breast carcinoma [RCV000207067] Chr16:55359026..70884455 [GRCh37]
Chr16:16q12.2-22.2
likely pathogenic|uncertain significance
Single allele complex Ductal breast carcinoma [RCV000207314] Chr16:56368689..90141355 [GRCh37]
Chr16:16q12.2-24.3
uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46464488-90155062)x3 copy number gain See cases [RCV000446110] Chr16:46464488..90155062 [GRCh37]
Chr16:16q11.2-24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p11.2-q21(chr16:34197492-64509054)x3 copy number gain See cases [RCV000511791] Chr16:34197492..64509054 [GRCh37]
Chr16:16p11.2-q21
pathogenic
GRCh37/hg19 16p13.2-q24.3(chr16:9273328-89548493)x3 copy number gain See cases [RCV000511622] Chr16:9273328..89548493 [GRCh37]
Chr16:16p13.2-q24.3
uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46497599-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626429] Chr16:46497599..90354753 [GRCh37]
Chr16:16q11.2-24.3
drug response
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16q11.2-24.3(chr16:46455960-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626435] Chr16:46455960..90354753 [GRCh37]
Chr16:16q11.2-24.3
drug response
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16q13-24.3(chr16:57051473-89797669)x3 copy number gain See cases [RCV000512511] Chr16:57051473..89797669 [GRCh37]
Chr16:16q13-24.3
pathogenic
GRCh37/hg19 16q12.2-22.2(chr16:54416050-72453266)x3 copy number gain not provided [RCV000683820] Chr16:54416050..72453266 [GRCh37]
Chr16:16q12.2-22.2
pathogenic
GRCh37/hg19 16q13-21(chr16:56950941-60203590)x1 copy number loss not provided [RCV000683823] Chr16:56950941..60203590 [GRCh37]
Chr16:16q13-21
likely pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
Single allele duplication not provided [RCV001542388] Chr16:46385317..61223349 [GRCh38]
Chr16:16q11.2-21
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16q21(chr16:58697786-58724493)x3 copy number gain not provided [RCV000751703] Chr16:58697786..58724493 [GRCh37]
Chr16:16q21
benign
NM_018231.3(SLC38A7):c.29A>G (p.Tyr10Cys) single nucleotide variant not provided [RCV000879321] Chr16:58680098 [GRCh38]
Chr16:58714002 [GRCh37]
Chr16:16q21
benign
NM_018231.3(SLC38A7):c.864C>T (p.Leu288=) single nucleotide variant not provided [RCV000879709] Chr16:58675959 [GRCh38]
Chr16:58709863 [GRCh37]
Chr16:16q21
benign
GRCh37/hg19 16q12.2-21(chr16:53455650-64006604)x3 copy number gain not provided [RCV000848548] Chr16:53455650..64006604 [GRCh37]
Chr16:16q12.2-21
uncertain significance
NM_018231.3(SLC38A7):c.1362C>T (p.Asn454=) single nucleotide variant not provided [RCV000970510] Chr16:58667412 [GRCh38]
Chr16:58701316 [GRCh37]
Chr16:16q21
benign
GRCh37/hg19 16q13-21(chr16:57292407-59103985)x1 copy number loss not provided [RCV001259855] Chr16:57292407..59103985 [GRCh37]
Chr16:16q13-21
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25582 AgrOrtholog
COSMIC SLC38A7 COSMIC
Ensembl Genes ENSG00000103042 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000219320 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000454325 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000454646 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000454734 UniProtKB/TrEMBL
  ENSP00000455119 UniProtKB/TrEMBL
  ENSP00000455362 UniProtKB/TrEMBL
  ENSP00000455490 UniProtKB/TrEMBL
  ENSP00000456464 UniProtKB/TrEMBL
  ENSP00000457462 UniProtKB/TrEMBL
  ENSP00000457988 UniProtKB/TrEMBL
Ensembl Transcript ENST00000219320 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000562397 UniProtKB/TrEMBL
  ENST00000563196 UniProtKB/TrEMBL
  ENST00000564010 UniProtKB/TrEMBL
  ENST00000564100 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000564391 UniProtKB/TrEMBL
  ENST00000565785 UniProtKB/TrEMBL
  ENST00000566598 UniProtKB/TrEMBL
  ENST00000570101 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000570214 UniProtKB/TrEMBL
GTEx ENSG00000103042 GTEx
HGNC ID HGNC:25582 ENTREZGENE
Human Proteome Map SLC38A7 Human Proteome Map
InterPro AA_transpt_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55238 UniProtKB/Swiss-Prot
NCBI Gene 55238 ENTREZGENE
OMIM 614236 OMIM
Pfam Aa_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162403772 PharmGKB
UniProt H3BMC5 ENTREZGENE, UniProtKB/TrEMBL
  H3BN87_HUMAN UniProtKB/TrEMBL
  H3BP25_HUMAN UniProtKB/TrEMBL
  H3BPK8_HUMAN UniProtKB/TrEMBL
  H3BPV9_HUMAN UniProtKB/TrEMBL
  H3BRZ0_HUMAN UniProtKB/TrEMBL
  H3BU46_HUMAN UniProtKB/TrEMBL
  H3BV81_HUMAN UniProtKB/TrEMBL
  Q9NVC3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q53GJ9 UniProtKB/Swiss-Prot
  Q9H9I5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 SLC38A7  solute carrier family 38 member 7    solute carrier family 38, member 7  Symbol and/or name change 5135510 APPROVED