DNAJC11 (DnaJ heat shock protein family (Hsp40) member C11) - Rat Genome Database

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Pathways
Gene: DNAJC11 (DnaJ heat shock protein family (Hsp40) member C11) Chlorocebus sabaeus
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Symbol: DNAJC11
Name: DnaJ heat shock protein family (Hsp40) member C11
RGD ID: 18783577
Description: INVOLVED IN cristae formation (inferred); FOUND IN MICOS complex (inferred); mitochondrial outer membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dnaJ homolog subfamily C member 11
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,043,357 - 125,113,008 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20125,043,379 - 125,111,503 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605429,085,155 - 29,156,780 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DNAJC11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120125,043,357 - 125,113,008 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20125,043,379 - 125,111,503 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605429,085,155 - 29,156,780 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
DNAJC11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816,634,170 - 6,701,816 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16,634,168 - 6,701,924 (-)Ensemblhg38GRCh38
GRCh3716,694,230 - 6,761,876 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3616,616,818 - 6,684,460 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3416,628,496 - 6,696,139NCBI
Celera15,808,085 - 5,875,829 (-)NCBICelera
Cytogenetic Map1p36.31NCBI
HuRef15,841,691 - 5,909,280 (-)NCBIHuRef
CHM1_116,682,946 - 6,750,670 (-)NCBICHM1_1
T2T-CHM13v2.016,159,834 - 6,227,482 (-)NCBIT2T-CHM13v2.0
Dnajc11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394152,018,177 - 152,066,416 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4152,018,148 - 152,066,594 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384151,933,720 - 151,981,959 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4151,933,691 - 151,982,137 (+)Ensemblmm10GRCm38
MGSCv374151,307,829 - 151,356,068 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364150,777,531 - 150,820,484 (+)NCBIMGSCv36mm8
Celera4154,218,847 - 154,266,983 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map482.77NCBI
Dnajc11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85167,724,776 - 167,770,032 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5167,724,717 - 167,770,694 (+)EnsemblGRCr8
mRatBN7.25162,442,042 - 162,487,966 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5162,442,026 - 162,488,169 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5165,144,997 - 165,190,379 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05166,965,766 - 167,011,245 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05166,927,965 - 166,973,444 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd5167,303,549 - 167,346,649 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive5169,316,543 - 169,361,802 (+)NCBILyon_Normotensive
Lyon_Hypertensive5168,492,258 - 168,537,516 (+)NCBILyon_Hypertensive
F344_StmMcwi5162,035,925 - 162,081,184 (+)NCBIF344_StmMcwi
Rnor_6.05169,109,907 - 169,154,725 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5169,109,907 - 169,154,720 (+)Ensemblrn6Rnor6.0
Rnor_5.05172,668,492 - 172,712,647 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45169,163,307 - 169,208,563 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5160,674,864 - 160,720,096 (+)NCBICelera
RGSC_v3.15169,173,490 - 169,218,754 (+)NCBI
Cytogenetic Map5q36NCBI
Dnajc11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554865,980,656 - 6,011,751 (+)Ensembl
ChiLan1.0NW_0049554865,959,083 - 6,011,177 (+)NCBIChiLan1.0ChiLan1.0
DNAJC11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21221,524,315 - 221,591,236 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,166,508 - 220,233,435 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v015,398,198 - 5,464,738 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.116,649,908 - 6,716,750 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16,649,908 - 6,716,755 (-)EnsemblpanPan2panpan1.1
DNAJC11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1560,450,389 - 60,525,852 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl560,436,516 - 60,525,780 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha560,459,863 - 60,535,485 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0560,666,266 - 60,742,972 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl560,665,412 - 60,742,908 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1560,665,560 - 60,741,961 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0560,531,774 - 60,607,150 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0560,934,199 - 61,010,060 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dnajc11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505830,893,969 - 30,954,982 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366231,379,128 - 1,440,241 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366231,379,131 - 1,440,241 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl667,463,374 - 67,529,930 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1667,463,366 - 67,529,958 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2662,365,898 - 62,379,131 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Dnajc11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248184,856,629 - 4,905,788 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248184,856,558 - 4,905,788 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Dnajc11
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v118,758,386 - 8,804,456 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in DNAJC11
1892 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007980733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JBLKOC010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000017784   ⟹   ENSCSAP00000017256
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl20125,043,379 - 125,111,503 (+)Ensembl
RefSeq Acc Id: XM_007980733   ⟹   XP_007978924
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.120125,043,357 - 125,113,008 (+)NCBI
Vero_WHO_p1.0NW_02366605429,085,155 - 29,156,780 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007978924 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017256
  ENSCSAP00000017256.1
RefSeq Acc Id: XP_007978924   ⟸   XM_007980733
- UniProtKB: A0A0D9S8R7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000017256   ⟸   ENSCSAT00000017784


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000750 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017784.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.110 UniProtKB/TrEMBL
InterPro DnaJ-like_C11_C UniProtKB/TrEMBL
  DnaJ_domain UniProtKB/TrEMBL
  DnaJ_domain_CS UniProtKB/TrEMBL
  DNAJC11-like_beta-barrel UniProtKB/TrEMBL
  J_dom_sf UniProtKB/TrEMBL
  Mito_inner_membrane_organizer UniProtKB/TrEMBL
KEGG Report csab:103225682 UniProtKB/TrEMBL
NCBI Gene DNAJC11 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 11 UniProtKB/TrEMBL
  DNAJ HOMOLOG SUBFAMILY C MEMBER 11 UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/TrEMBL
  DNAJC11_beta-barrel UniProtKB/TrEMBL
  DUF3395 UniProtKB/TrEMBL
PRINTS JDOMAIN UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/TrEMBL
SMART DnaJ UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/TrEMBL
UniProt A0A0D9S8R7 ENTREZGENE, UniProtKB/TrEMBL