WDR44 (WD repeat domain 44) - Rat Genome Database

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Pathways
Gene: WDR44 (WD repeat domain 44) Chlorocebus sabaeus
Analyze
Symbol: WDR44
Name: WD repeat domain 44
RGD ID: 18763609
Description: ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN regulation of cell migration (ortholog); FOUND IN microtubule (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 44
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606531,070,326 - 31,167,781 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0



Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
WDR44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606531,070,326 - 31,167,781 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
WDR44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X118,346,073 - 118,449,961 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX118,345,968 - 118,450,285 (+)Ensemblhg38GRCh38
GRCh37X117,480,036 - 117,583,924 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X117,364,070 - 117,467,952 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X117,261,923 - 117,365,803NCBI
CeleraX117,934,854 - 118,038,746 (+)NCBICelera
Cytogenetic MapXq24NCBI
HuRefX106,974,656 - 107,079,039 (+)NCBIHuRef
CHM1_1X117,390,888 - 117,494,837 (+)NCBICHM1_1
T2T-CHM13v2.0X116,723,730 - 116,827,622 (+)NCBIT2T-CHM13v2.0
Wdr44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X23,559,231 - 23,672,265 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX23,559,290 - 23,672,264 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X23,692,402 - 23,806,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX23,693,051 - 23,806,025 (+)Ensemblmm10GRCm38
MGSCv37X23,270,243 - 23,383,128 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X22,850,010 - 22,962,984 (+)NCBIMGSCv36mm8
CeleraX21,785,140 - 21,898,540 (+)NCBICelera
Cytogenetic MapXA2NCBI
cM MapX17.36NCBI
Wdr44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X119,286,802 - 119,392,240 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX119,287,142 - 119,392,232 (+)EnsemblGRCr8
mRatBN7.2X114,481,890 - 114,587,307 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX114,482,006 - 114,587,224 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX116,513,860 - 116,619,396 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X120,005,121 - 120,110,659 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X117,558,726 - 117,664,256 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X120,860,178 - 120,965,918 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX120,859,968 - 120,965,910 (+)Ensemblrn6Rnor6.0
Rnor_5.0X121,006,674 - 121,111,932 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X9,720,140 - 9,825,685 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX113,672,342 - 113,777,724 (+)NCBICelera
RGSC_v3.1X9,726,056 - 9,830,906 (-)NCBI
Cytogenetic MapXq34NCBI
Wdr44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555341,490,830 - 1,599,408 (-)Ensembl
ChiLan1.0NW_0049555341,492,990 - 1,599,402 (-)NCBIChiLan1.0ChiLan1.0
WDR44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X117,703,876 - 117,810,663 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X117,707,484 - 117,814,963 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X107,353,013 - 107,456,986 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X117,804,737 - 117,907,764 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX117,805,236 - 117,907,764 (+)EnsemblpanPan2panpan1.1
WDR44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X90,571,138 - 90,653,094 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX90,571,554 - 90,652,647 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX76,712,119 - 76,761,098 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X92,311,013 - 92,393,276 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX92,310,889 - 92,393,270 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X89,765,063 - 89,846,425 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X91,516,928 - 91,598,257 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X91,251,305 - 91,333,551 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Wdr44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X89,521,967 - 89,613,716 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647911,373,717 - 11,465,607 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647911,373,781 - 11,465,516 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX96,950,288 - 97,027,050 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X96,950,288 - 97,027,069 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Wdr44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248952,323,426 - 2,414,711 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248952,323,407 - 2,414,324 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Wdr44
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X51,124,905 - 51,227,056 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008019537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JBLKOC010000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_008019537   ⟹   XP_008017728
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606531,070,326 - 31,167,781 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008017728 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000014284
  ENSCSAP00000014284.1
RefSeq Acc Id: XP_008017728   ⟸   XM_008019537
- UniProtKB: A0A0D9S095 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000018269 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000016366.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR44/Dgr2 UniProtKB/TrEMBL
KEGG Report csab:103247413 UniProtKB/TrEMBL
NCBI Gene WDR44 ENTREZGENE
PANTHER PTHR14221 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 44 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A0D9S095 ENTREZGENE, UniProtKB/TrEMBL