WDR44 (WD repeat domain 44) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: WDR44 (WD repeat domain 44) Sus scrofa
Analyze
Symbol: WDR44
Name: WD repeat domain 44
RGD ID: 13870778
Description: ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN regulation of cell migration (ortholog); ASSOCIATED WITH autistic disorder (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN microtubule (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 44
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX96,950,288 - 97,027,050 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X96,950,288 - 97,027,069 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
WDR44
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX96,950,288 - 97,027,050 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X96,950,288 - 97,027,069 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
WDR44
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X118,346,073 - 118,449,961 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX118,346,073 - 118,449,961 (+)EnsemblGRCh38hg38GRCh38
GRCh37X117,480,036 - 117,583,924 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X117,364,070 - 117,467,952 (+)NCBINCBI36hg18NCBI36
Build 34X117,261,923 - 117,365,803NCBI
CeleraX117,934,854 - 118,038,746 (+)NCBI
Cytogenetic MapXq24NCBI
HuRefX106,974,656 - 107,079,039 (+)NCBIHuRef
CHM1_1X117,390,888 - 117,494,837 (+)NCBICHM1_1
T2T-CHM13v2.0X116,723,730 - 116,827,622 (+)NCBI
Wdr44
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X23,559,231 - 23,672,265 (+)NCBIGRCm39mm39
GRCm39 EnsemblX23,559,290 - 23,672,264 (+)Ensembl
GRCm38X23,692,402 - 23,806,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX23,693,051 - 23,806,025 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X23,270,243 - 23,383,128 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X22,850,010 - 22,962,984 (+)NCBImm8
CeleraX21,785,140 - 21,898,540 (+)NCBICelera
Cytogenetic MapXA2NCBI
Wdr44
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X114,481,890 - 114,587,307 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX114,482,006 - 114,587,224 (+)Ensembl
Rnor_6.0X120,860,178 - 120,965,918 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX120,859,968 - 120,965,910 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X121,006,674 - 121,111,932 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X9,720,140 - 9,825,685 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X9,726,056 - 9,830,906 (-)NCBI
CeleraX113,672,342 - 113,777,724 (+)NCBICelera
Cytogenetic MapXq34NCBI
Wdr44
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555341,490,830 - 1,599,408 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555341,492,990 - 1,599,402 (-)NCBIChiLan1.0ChiLan1.0
WDR44
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X117,804,737 - 117,907,764 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX117,805,236 - 117,907,764 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X107,353,013 - 107,456,986 (+)NCBIMhudiblu_PPA_v0panPan3
WDR44
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X90,571,138 - 90,653,094 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX90,571,554 - 90,652,647 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX76,712,119 - 76,761,098 (+)NCBI
ROS_Cfam_1.0X92,311,013 - 92,393,276 (+)NCBI
ROS_Cfam_1.0 EnsemblX92,310,889 - 92,393,270 (+)Ensembl
UMICH_Zoey_3.1X89,765,063 - 89,846,425 (+)NCBI
UNSW_CanFamBas_1.0X91,516,928 - 91,598,257 (+)NCBI
UU_Cfam_GSD_1.0X91,251,305 - 91,333,551 (+)NCBI
Wdr44
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X89,521,967 - 89,613,716 (+)NCBI
SpeTri2.0NW_00493647911,373,781 - 11,465,516 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR44
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606531,070,326 - 31,167,781 (+)NCBIVero_WHO_p1.0
Wdr44
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248952,323,426 - 2,414,711 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248952,323,407 - 2,414,324 (+)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 1 3 3 2 6 2 3
Low 9 3 2 17 2 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000053734   ⟹   ENSSSCP00000037318
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX96,950,418 - 97,025,788 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000070157   ⟹   ENSSSCP00000067201
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX96,950,288 - 97,027,050 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000081455   ⟹   ENSSSCP00000069239
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX96,950,429 - 97,025,788 (+)Ensembl
RefSeq Acc Id: XM_021080420   ⟹   XP_020936079
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X96,950,288 - 97,027,069 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080421   ⟹   XP_020936080
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X96,950,407 - 97,027,069 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020936079 (Get FASTA)   NCBI Sequence Viewer  
  XP_020936080 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein JAA74256 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020936079   ⟸   XM_021080420
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_020936080   ⟸   XM_021080421
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000067201   ⟸   ENSSSCT00000070157
RefSeq Acc Id: ENSSSCP00000069239   ⟸   ENSSSCT00000081455
RefSeq Acc Id: ENSSSCP00000037318   ⟸   ENSSSCT00000053734


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035488 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005032138 UniProtKB/TrEMBL
  ENSSSCG00015003626 UniProtKB/TrEMBL
  ENSSSCG00025061267 UniProtKB/TrEMBL
  ENSSSCG00030036311 UniProtKB/TrEMBL
  ENSSSCG00035071946 UniProtKB/TrEMBL
  ENSSSCG00045031918 UniProtKB/TrEMBL
  ENSSSCG00050025713 UniProtKB/TrEMBL
  ENSSSCG00055024929 UniProtKB/TrEMBL
  ENSSSCG00060022450 UniProtKB/TrEMBL
  ENSSSCG00065028092 UniProtKB/TrEMBL
  ENSSSCG00070029055 UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000037318.1 UniProtKB/TrEMBL
  ENSSSCP00000067201 ENTREZGENE
  ENSSSCP00000067201.1 UniProtKB/TrEMBL
  ENSSSCP00000069239.1 UniProtKB/TrEMBL
  ENSSSCP00005031929.1 UniProtKB/TrEMBL
  ENSSSCP00005031959.1 UniProtKB/TrEMBL
  ENSSSCP00015001770.1 UniProtKB/TrEMBL
  ENSSSCP00015001777.1 UniProtKB/TrEMBL
  ENSSSCP00015001782.1 UniProtKB/TrEMBL
  ENSSSCP00015001790.1 UniProtKB/TrEMBL
  ENSSSCP00015001803.1 UniProtKB/TrEMBL
  ENSSSCP00025036786.1 UniProtKB/TrEMBL
  ENSSSCP00025036933.1 UniProtKB/TrEMBL
  ENSSSCP00025037085.1 UniProtKB/TrEMBL
  ENSSSCP00030022959.1 UniProtKB/TrEMBL
  ENSSSCP00030022978.1 UniProtKB/TrEMBL
  ENSSSCP00030023015.1 UniProtKB/TrEMBL
  ENSSSCP00030023035.1 UniProtKB/TrEMBL
  ENSSSCP00030023059.1 UniProtKB/TrEMBL
  ENSSSCP00035041075.1 UniProtKB/TrEMBL
  ENSSSCP00035041084.1 UniProtKB/TrEMBL
  ENSSSCP00035041125.1 UniProtKB/TrEMBL
  ENSSSCP00045037971.1 UniProtKB/TrEMBL
  ENSSSCP00045038148.1 UniProtKB/TrEMBL
  ENSSSCP00045038313.1 UniProtKB/TrEMBL
  ENSSSCP00045038479.1 UniProtKB/TrEMBL
  ENSSSCP00050014415.1 UniProtKB/TrEMBL
  ENSSSCP00050014419.1 UniProtKB/TrEMBL
  ENSSSCP00050014424.1 UniProtKB/TrEMBL
  ENSSSCP00050014440.1 UniProtKB/TrEMBL
  ENSSSCP00055039367.1 UniProtKB/TrEMBL
  ENSSSCP00055039494.1 UniProtKB/TrEMBL
  ENSSSCP00055039620.1 UniProtKB/TrEMBL
  ENSSSCP00060013086.1 UniProtKB/TrEMBL
  ENSSSCP00060013088.1 UniProtKB/TrEMBL
  ENSSSCP00060013091.1 UniProtKB/TrEMBL
  ENSSSCP00060013092.1 UniProtKB/TrEMBL
  ENSSSCP00065015962.1 UniProtKB/TrEMBL
  ENSSSCP00065015964.1 UniProtKB/TrEMBL
  ENSSSCP00065015965.1 UniProtKB/TrEMBL
  ENSSSCP00065015976.1 UniProtKB/TrEMBL
  ENSSSCP00070049562.1 UniProtKB/TrEMBL
  ENSSSCP00070049564.1 UniProtKB/TrEMBL
  ENSSSCP00070049565.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000053734.2 UniProtKB/TrEMBL
  ENSSSCT00000070157 ENTREZGENE
  ENSSSCT00000070157.1 UniProtKB/TrEMBL
  ENSSSCT00000081455.1 UniProtKB/TrEMBL
  ENSSSCT00005051630.1 UniProtKB/TrEMBL
  ENSSSCT00005051684.1 UniProtKB/TrEMBL
  ENSSSCT00015004730.1 UniProtKB/TrEMBL
  ENSSSCT00015004740.1 UniProtKB/TrEMBL
  ENSSSCT00015004754.1 UniProtKB/TrEMBL
  ENSSSCT00015004769.1 UniProtKB/TrEMBL
  ENSSSCT00015004786.1 UniProtKB/TrEMBL
  ENSSSCT00025084562.1 UniProtKB/TrEMBL
  ENSSSCT00025084940.1 UniProtKB/TrEMBL
  ENSSSCT00025085341.1 UniProtKB/TrEMBL
  ENSSSCT00030050506.1 UniProtKB/TrEMBL
  ENSSSCT00030050542.1 UniProtKB/TrEMBL
  ENSSSCT00030050620.1 UniProtKB/TrEMBL
  ENSSSCT00030050673.1 UniProtKB/TrEMBL
  ENSSSCT00030050726.1 UniProtKB/TrEMBL
  ENSSSCT00035097369.1 UniProtKB/TrEMBL
  ENSSSCT00035097393.1 UniProtKB/TrEMBL
  ENSSSCT00035097472.1 UniProtKB/TrEMBL
  ENSSSCT00045054528.1 UniProtKB/TrEMBL
  ENSSSCT00045054752.1 UniProtKB/TrEMBL
  ENSSSCT00045054966.1 UniProtKB/TrEMBL
  ENSSSCT00045055191.1 UniProtKB/TrEMBL
  ENSSSCT00050034628.1 UniProtKB/TrEMBL
  ENSSSCT00050034640.1 UniProtKB/TrEMBL
  ENSSSCT00050034651.1 UniProtKB/TrEMBL
  ENSSSCT00050034674.1 UniProtKB/TrEMBL
  ENSSSCT00055049282.1 UniProtKB/TrEMBL
  ENSSSCT00055049426.1 UniProtKB/TrEMBL
  ENSSSCT00055049568.1 UniProtKB/TrEMBL
  ENSSSCT00060030473.1 UniProtKB/TrEMBL
  ENSSSCT00060030476.1 UniProtKB/TrEMBL
  ENSSSCT00060030487.1 UniProtKB/TrEMBL
  ENSSSCT00060030490.1 UniProtKB/TrEMBL
  ENSSSCT00065037875.1 UniProtKB/TrEMBL
  ENSSSCT00065037879.1 UniProtKB/TrEMBL
  ENSSSCT00065037884.1 UniProtKB/TrEMBL
  ENSSSCT00065037903.1 UniProtKB/TrEMBL
  ENSSSCT00070058294.1 UniProtKB/TrEMBL
  ENSSSCT00070058296.1 UniProtKB/TrEMBL
  ENSSSCT00070058297.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  Intein_N UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR44/Dgr2 UniProtKB/TrEMBL
NCBI Gene WDR44 ENTREZGENE
PANTHER PTHR14221 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE INTEIN_N_TER UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A480TKL8_PIG UniProtKB/TrEMBL
  A0A4X1W552_PIG UniProtKB/TrEMBL
  A0A4X1W5Z3_PIG UniProtKB/TrEMBL
  A0A4X1W6A8_PIG UniProtKB/TrEMBL
  A0A5G2QST7_PIG UniProtKB/TrEMBL
  A0A8D0K325_PIG UniProtKB/TrEMBL
  A0A8D0LTD0_PIG UniProtKB/TrEMBL
  A0A8D1IW92_PIG UniProtKB/TrEMBL
  A0A8D2BD39_PIG UniProtKB/TrEMBL
  M3TYU5_PIG UniProtKB/TrEMBL
VGNC ID VGNC:94921 ENTREZGENE