HIVEP2 (HIVEP zinc finger 2) - Rat Genome Database

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Gene: HIVEP2 (HIVEP zinc finger 2) Chlorocebus sabaeus
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Symbol: HIVEP2
Name: HIVEP zinc finger 2
RGD ID: 18744089
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH asthma (ortholog); autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 13 (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: human immunodeficiency virus type I enhancer binding protein 2; transcription factor HIVEP2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11330,476,938 - 30,501,708 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1330,477,205 - 30,500,066 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660402,437,283 - 2,632,922 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse:




References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
HIVEP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11330,476,938 - 30,501,708 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1330,477,205 - 30,500,066 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660402,437,283 - 2,632,922 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
HIVEP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386142,751,469 - 142,945,733 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6142,751,467 - 142,956,698 (-)Ensemblhg38GRCh38
GRCh376143,072,606 - 143,266,313 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366143,114,297 - 143,308,031 (-)NCBIBuild 36Build 36hg18NCBI36
Build 346143,114,298 - 143,137,675NCBI
Celera6143,813,124 - 144,006,743 (-)NCBICelera
Cytogenetic Map6q24.2NCBI
HuRef6140,638,941 - 140,724,428 (-)NCBIHuRef
CHM1_16143,335,288 - 143,528,914 (-)NCBICHM1_1
T2T-CHM13v2.06143,943,829 - 144,138,128 (-)NCBIT2T-CHM13v2.0
Hivep2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391013,841,819 - 14,027,122 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1013,841,819 - 14,027,118 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381013,961,609 - 14,151,378 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1013,966,075 - 14,151,374 (+)Ensemblmm10GRCm38
MGSCv371013,686,185 - 13,871,184 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361013,656,577 - 13,841,576 (+)NCBIMGSCv36mm8
Celera1013,865,115 - 14,051,975 (+)NCBICelera
Cytogenetic Map10A2NCBI
cM Map105.14NCBI
Hivep2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8110,176,880 - 10,376,089 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl110,179,402 - 10,376,089 (+)EnsemblGRCr8
mRatBN7.218,358,205 - 8,555,993 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl18,359,289 - 8,555,993 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx18,074,215 - 8,272,890 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0114,073,360 - 14,272,030 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.018,341,455 - 8,537,959 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd19,708,948 - 9,907,703 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive19,026,396 - 9,225,165 (+)NCBILyon_Normotensive
Lyon_Hypertensive110,192,564 - 10,391,324 (+)NCBILyon_Hypertensive
F344_StmMcwi18,575,160 - 8,773,603 (+)NCBIF344_StmMcwi
Rnor_6.018,129,354 - 8,333,890 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18,310,577 - 8,333,885 (+)Ensemblrn6Rnor6.0
Rnor_5.019,755,847 - 9,953,696 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.418,783,016 - 9,032,351 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera16,844,547 - 7,040,486 (+)NCBICelera
RGSC_v3.118,783,015 - 9,032,351 (+)NCBI
Cytogenetic Map1p13NCBI
Hivep2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543617,518,603 - 17,550,790 (+)Ensembl
ChiLan1.0NW_00495543617,368,948 - 17,549,957 (+)NCBIChiLan1.0ChiLan1.0
HIVEP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25162,725,432 - 162,920,256 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16160,620,200 - 160,705,780 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06140,518,954 - 140,712,849 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16145,243,271 - 145,328,852 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6145,240,914 - 145,328,850 (-)EnsemblpanPan2panpan1.1
HIVEP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1134,367,455 - 34,560,277 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl134,369,106 - 34,398,234 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha135,265,065 - 35,457,737 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0134,542,249 - 34,735,165 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl134,542,250 - 34,735,498 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1134,411,412 - 34,603,972 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0134,294,004 - 34,486,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0134,605,272 - 34,798,204 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hivep2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946129,334,195 - 129,515,890 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366253,267,947 - 3,301,369 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366253,219,260 - 3,301,361 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIVEP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl122,412,984 - 22,436,130 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1122,240,681 - 22,436,945 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,926,118 - 24,957,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Hivep2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475311,383,280 - 11,447,934 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475311,263,701 - 11,446,887 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Hivep2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12223,032,374 - 223,229,948 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in HIVEP2
374 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000015154   ⟹   ENSCSAP00000013102
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1330,477,205 - 30,500,066 (+)Ensembl
RefSeq Acc Id: XM_038000794   ⟹   XP_037856722
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660402,437,283 - 2,632,922 (+)NCBI
RefSeq Acc Id: XM_038000795   ⟹   XP_037856723
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660402,510,805 - 2,632,922 (+)NCBI
RefSeq Acc Id: XM_038000796   ⟹   XP_037856724
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660402,437,657 - 2,632,922 (+)NCBI
RefSeq Acc Id: XM_038000797   ⟹   XP_037856725
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_0236660402,475,972 - 2,632,922 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037856722 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013102.1
Ensembl Acc Id: ENSCSAP00000013102   ⟸   ENSCSAT00000015154
RefSeq Acc Id: XP_037856722   ⟸   XM_038000794
- UniProtKB: A0A0D9RWW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_037856724   ⟸   XM_038000796
RefSeq Acc Id: XP_037856725   ⟸   XM_038000797
RefSeq Acc Id: XP_037856723   ⟸   XM_038000795


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017065 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015154.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Zinc-finger_DNA-bd_regulators UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene HIVEP2 ENTREZGENE
PANTHER SCHNURRI, ISOFORM F UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR HIVEP2 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0D9RWW3 ENTREZGENE, UniProtKB/TrEMBL