Hivep2 (HIVEP zinc finger 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Hivep2 (HIVEP zinc finger 2) Rattus norvegicus
Analyze
Symbol: Hivep2
Name: HIVEP zinc finger 2
RGD ID: 61988
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 43. Orthologous to human HIVEP2 (HIVEP zinc finger 2); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: angiotensinogen gene-inducible enhancer-binding protein 1; c-myc intron binding protein 1; DNA-binding protein AGIE-BP1; human immunodeficiency virus type 1 enhancer-binding protein 2; human immunodeficiency virus type I enhancer binding protein 2; human immunodeficiency virus type I enhancer-binding protein 2; human immunodeficiency virus type I enhancer-binding protein 2 homolog; MIBP-1; MIBP1; myc intron-binding protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.218,358,205 - 8,555,993 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl18,359,289 - 8,555,993 (+)Ensembl
Rnor_6.018,129,354 - 8,333,890 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18,310,577 - 8,333,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.019,755,847 - 9,953,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.418,783,016 - 9,032,351 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.118,783,015 - 9,032,351 (+)NCBI
Celera16,844,547 - 7,040,486 (+)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (ISO)
3',5'-cyclic AMP  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxynon-2-enal  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
arsenite(3-)  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (EXP)
bisphenol A  (EXP)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dichloromethane  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
ethylbenzene  (ISO)
flavonoids  (EXP)
fluoranthene  (ISO)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (EXP)
graphite  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
methylmercury chloride  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP)
nickel dichloride  (ISO)
o-xylene  (ISO)
paracetamol  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
testosterone enanthate  (ISO)
thioacetamide  (EXP)
toluene  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IBA)

References


Genomics

Comparative Map Data
Hivep2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.218,358,205 - 8,555,993 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl18,359,289 - 8,555,993 (+)Ensembl
Rnor_6.018,129,354 - 8,333,890 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18,310,577 - 8,333,885 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.019,755,847 - 9,953,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.418,783,016 - 9,032,351 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.118,783,015 - 9,032,351 (+)NCBI
Celera16,844,547 - 7,040,486 (+)NCBICelera
Cytogenetic Map1p13NCBI
HIVEP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386142,751,469 - 142,946,365 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6142,751,469 - 142,956,698 (-)EnsemblGRCh38hg38GRCh38
GRCh376143,072,606 - 143,266,313 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366143,114,297 - 143,308,031 (-)NCBINCBI36hg18NCBI36
Build 346143,114,298 - 143,137,675NCBI
Celera6143,813,124 - 144,006,743 (-)NCBI
Cytogenetic Map6q24.2NCBI
HuRef6140,638,941 - 140,724,428 (-)NCBIHuRef
CHM1_16143,335,288 - 143,528,914 (-)NCBICHM1_1
Hivep2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391013,841,819 - 14,027,122 (+)NCBIGRCm39mm39
GRCm39 Ensembl1013,841,819 - 14,027,118 (+)Ensembl
GRCm381013,961,609 - 14,151,378 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1013,966,075 - 14,151,374 (+)EnsemblGRCm38mm10GRCm38
MGSCv371013,686,185 - 13,871,184 (+)NCBIGRCm37mm9NCBIm37
MGSCv361013,656,577 - 13,841,576 (+)NCBImm8
Celera1013,865,115 - 14,051,975 (+)NCBICelera
Cytogenetic Map10A2NCBI
cM Map105.14NCBI
Hivep2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543617,518,603 - 17,550,790 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543617,368,948 - 17,549,957 (+)NCBIChiLan1.0ChiLan1.0
HIVEP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16145,243,271 - 145,328,852 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6145,240,914 - 145,328,850 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06140,518,954 - 140,712,849 (-)NCBIMhudiblu_PPA_v0panPan3
HIVEP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1134,367,455 - 34,560,277 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl134,369,106 - 34,398,234 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha135,265,065 - 35,457,737 (-)NCBI
ROS_Cfam_1.0134,542,249 - 34,735,165 (-)NCBI
ROS_Cfam_1.0 Ensembl134,542,250 - 34,735,498 (-)Ensembl
UMICH_Zoey_3.1134,411,412 - 34,603,972 (-)NCBI
UNSW_CanFamBas_1.0134,294,004 - 34,486,563 (-)NCBI
UU_Cfam_GSD_1.0134,605,272 - 34,798,204 (-)NCBI
Hivep2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946129,334,195 - 129,515,890 (-)NCBI
SpeTri2.0NW_0049366253,219,260 - 3,301,361 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HIVEP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl122,241,840 - 22,436,089 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1122,240,681 - 22,436,945 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,926,118 - 24,957,537 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HIVEP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11330,476,938 - 30,501,708 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1330,477,205 - 30,500,066 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660402,437,283 - 2,632,922 (+)NCBIVero_WHO_p1.0
Hivep2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475311,263,701 - 11,446,887 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D1Got8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,528,113 - 8,528,343 (+)MAPPERmRatBN7.2
Rnor_6.018,306,014 - 8,306,243NCBIRnor6.0
Rnor_5.019,925,820 - 9,926,049UniSTSRnor5.0
RGSC_v3.419,004,475 - 9,004,704UniSTSRGSC3.4
RGSC_v3.419,004,474 - 9,004,704RGDRGSC3.4
RGSC_v3.119,004,475 - 9,004,704RGD
Celera17,012,598 - 7,012,840UniSTS
RH 3.4 Map1102.72UniSTS
RH 3.4 Map1102.72RGD
RH 2.0 Map10.0RGD
Cytogenetic Map1p13UniSTS
D1Got366  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,403,128 - 8,403,253 (+)MAPPERmRatBN7.2
Rnor_6.018,160,094 - 8,160,218NCBIRnor6.0
Rnor_5.019,786,587 - 9,786,711UniSTSRnor5.0
RGSC_v3.418,827,582 - 8,827,706UniSTSRGSC3.4
Celera16,887,822 - 6,887,946UniSTS
Cytogenetic Map1p13UniSTS
RH78408  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,554,880 - 8,555,064 (+)MAPPERmRatBN7.2
Rnor_6.018,332,778 - 8,332,961NCBIRnor6.0
Rnor_5.019,952,584 - 9,952,767UniSTSRnor5.0
RGSC_v3.419,031,239 - 9,031,422UniSTSRGSC3.4
Celera17,039,374 - 7,039,557UniSTS
Cytogenetic Map1p13UniSTS
RH142838  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,369,179 - 8,369,305 (+)MAPPERmRatBN7.2
Rnor_6.018,139,245 - 8,139,370NCBIRnor6.0
Rnor_5.019,765,738 - 9,765,863UniSTSRnor5.0
RGSC_v3.418,792,909 - 8,793,034UniSTSRGSC3.4
Celera16,854,446 - 6,854,571UniSTS
RH 3.4 Map1106.1UniSTS
Cytogenetic Map1p13UniSTS
PMC126259P6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,554,087 - 8,554,185 (+)MAPPERmRatBN7.2
Rnor_6.018,331,985 - 8,332,082NCBIRnor6.0
Rnor_5.019,951,791 - 9,951,888UniSTSRnor5.0
RGSC_v3.419,030,446 - 9,030,543UniSTSRGSC3.4
Celera17,038,581 - 7,038,678UniSTS
Cytogenetic Map1p13UniSTS
RH138492  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,522,314 - 8,522,514 (+)MAPPERmRatBN7.2
Rnor_6.018,300,215 - 8,300,414NCBIRnor6.0
Rnor_5.019,920,021 - 9,920,220UniSTSRnor5.0
RGSC_v3.418,998,676 - 8,998,875UniSTSRGSC3.4
Celera17,006,847 - 7,007,046UniSTS
RH 3.4 Map1100.31UniSTS
Cytogenetic Map1p13UniSTS
BF409594  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.218,461,503 - 8,461,624 (+)MAPPERmRatBN7.2
Rnor_6.018,239,758 - 8,239,878NCBIRnor6.0
Rnor_5.019,859,857 - 9,859,977UniSTSRnor5.0
Celera16,946,273 - 6,946,393UniSTS
RH 3.4 Map1106.1UniSTS
Cytogenetic Map1p13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:364
Count of miRNA genes:198
Interacting mature miRNAs:261
Transcripts:ENSRNOT00000015131
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 11 19 6 8 60 6 5 11 6
Low 1 43 44 39 39 2 3 14 29 36 2
Below cutoff 2 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000015131   ⟹   ENSRNOP00000015131
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl18,359,289 - 8,555,993 (+)Ensembl
Rnor_6.0 Ensembl18,310,577 - 8,333,885 (+)Ensembl
RefSeq Acc Id: NM_024137   ⟹   NP_077051
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,359,289 - 8,555,993 (+)NCBI
Rnor_6.018,129,354 - 8,333,890 (+)NCBI
Rnor_5.019,755,847 - 9,953,696 (+)NCBI
RGSC_v3.418,783,016 - 9,032,351 (+)RGD
Celera16,844,547 - 7,040,486 (+)RGD
Sequence:
RefSeq Acc Id: XM_039109863   ⟹   XP_038965791
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,358,679 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109867   ⟹   XP_038965795
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,358,678 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109870   ⟹   XP_038965798
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,358,693 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109872   ⟹   XP_038965800
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,359,083 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109882   ⟹   XP_038965810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,358,205 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109885   ⟹   XP_038965813
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,359,084 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109890   ⟹   XP_038965818
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,358,219 - 8,555,189 (+)NCBI
RefSeq Acc Id: XM_039109895   ⟹   XP_038965823
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.218,498,428 - 8,555,189 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_077051   ⟸   NM_024137
- UniProtKB: Q00900 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000015131   ⟸   ENSRNOT00000015131
RefSeq Acc Id: XP_038965810   ⟸   XM_039109882
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965818   ⟸   XM_039109890
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965795   ⟸   XM_039109867
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965791   ⟸   XM_039109863
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965798   ⟸   XM_039109870
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965800   ⟸   XM_039109872
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965813   ⟸   XM_039109885
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038965823   ⟸   XM_039109895
- Peptide Label: isoform X1
Protein Domains
C2H2-type

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61988 AgrOrtholog
BioCyc Gene G2FUF-62354 BioCyc
Ensembl Genes ENSRNOG00000011015 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000015131 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015131 ENTREZGENE, UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:29721 UniProtKB/Swiss-Prot
NCBI Gene 29721 ENTREZGENE
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hivep2 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC230705
UniProt G3V7H8_RAT UniProtKB/TrEMBL
  Q00900 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q63725 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-13 Hivep2  HIVEP zinc finger 2  Hivep2  human immunodeficiency virus type I enhancer binding protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-09-10 Hivep2  human immunodeficiency virus type I enhancer binding protein 2    human immunodeficiency virus type 1 enhancer-binding protein 2   Name updated 1299863 APPROVED
2002-06-10 Hivep2  human immunodeficiency virus type 1 enhancer-binding protein 2       Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_domains contains two zinc finger domains 61627