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Gene: ATP5MC2 (ATP synthase membrane subunit c locus 2) Chlorocebus sabaeus

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Symbol:

ATP5MC2

Name:

ATP synthase membrane subunit c locus 2

RGD ID:

18447988

Description:

ENCODES a protein that exhibits ligand-gated channel activity (ortholog); INVOLVED IN pore complex assembly (ortholog); response to 3,3',5-triiodo-L-thyronine (ortholog); response to ethanol (ortholog); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH clear cell renal cell carcinoma (ortholog); obesity (ortholog); renal cell carcinoma (ortholog); FOUND IN cation channel complex (ortholog); mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ATP synthase F(0) complex subunit C2, mitochondrial; ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9); ATP5G2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	49,768,977 - 49,780,664 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	49,768,783 - 49,780,081 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	196,264,489 - 196,276,629 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

clear cell renal cell carcinoma (ISO)

obesity (ISO)

renal cell carcinoma (ISO)

ST Elevation Myocardial Infarction (ISO)

urinary bladder cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

monoatomic ion transport (IEA)

pore complex assembly (ISO)

proton motive force-driven ATP synthesis (IEA)

proton transmembrane transport (IEA)

response to 3,3',5-triiodo-L-thyronine (ISO)

response to ethanol (ISO)

Cellular Component

cation channel complex (ISO)

mitochondrial inner membrane (IEA)

mitochondrial membrane (IEA)

mitochondrion (ISO)

proton-transporting ATP synthase complex (IEA)

proton-transporting two-sector ATPase complex, proton-transporting domain (IEA)

Molecular Function

ligand-gated channel activity (ISO)

lipid binding (IEA)

protein binding (ISO)

proton transmembrane transporter activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

electron transport chain pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

ATP5MC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	49,768,977 - 49,780,664 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	49,768,783 - 49,780,081 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	196,264,489 - 196,276,629 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

ATP5MC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	53,665,170 - 53,681,423 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	53,632,726 - 53,677,651 (-)	Ensembl			hg38	GRCh38
GRCh37	12	54,058,954 - 54,070,114 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	52,345,211 - 52,356,779 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	52,345,215 - 52,356,165	NCBI
Celera	12	53,709,025 - 53,720,613 (-)	NCBI		Celera
Cytogenetic Map	12	q13.13	NCBI
HuRef	12	51,097,376 - 51,109,001 (-)	NCBI		HuRef
CHM1_1	12	54,025,876 - 54,037,448 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	53,631,253 - 53,647,563 (-)	NCBI		T2T-CHM13v2.0

Atp5mc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	102,571,303 - 102,579,482 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	102,571,299 - 102,580,787 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	102,662,868 - 102,671,047 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	102,662,864 - 102,672,352 (-)	Ensembl			mm10	GRCm38
MGSCv37	15	102,493,299 - 102,501,478 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	102,490,902 - 102,499,081 (-)	NCBI		MGSCv36	mm8
Celera	17	6,359,298 - 6,359,944 (-)	NCBI		Celera
Cytogenetic Map	15	F3	NCBI
cM Map	15	57.77	NCBI

Atp5mc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	135,669,847 - 135,680,839 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	135,669,848 - 135,678,231 (-)	Ensembl				GRCr8
mRatBN7.2	7	133,791,341 - 133,799,713 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	133,791,342 - 133,799,733 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	135,547,188 - 135,555,690 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	137,776,552 - 137,785,054 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	137,762,671 - 137,771,041 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	7	137,744,174 - 137,752,545 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	7	138,696,496 - 138,704,867 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	7	138,828,704 - 138,837,075 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	7	137,291,931 - 137,300,433 (-)	NCBI		F344_StmMcwi
Rnor_6.0	7	144,264,207 - 144,272,578 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	144,264,199 - 144,272,578 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	142,056,425 - 142,064,796 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	141,412,892 - 141,421,263 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	130,218,595 - 130,226,966 (-)	NCBI		Celera
RGSC_v3.1	7	141,489,329 - 141,494,599 (-)	NCBI
Cytogenetic Map	7	q36	NCBI

Atp5mc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955458	952,817 - 959,962 (-)	Ensembl
ChiLan1.0	NW_004955458	952,817 - 960,963 (-)	NCBI	ChiLan1.0	ChiLan1.0

ATP5MC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	40,508,284 - 40,520,592 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	40,505,381 - 40,517,356 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	35,078,290 - 35,089,480 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	35,864,248 - 35,876,216 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

LOC100688210
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	7,516,917 - 7,517,538 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	7,204,368 - 7,204,986 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	7,282,779 - 7,283,407 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	14	7,487,882 - 7,488,510 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	7,229,730 - 7,230,358 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	7,374,866 - 7,375,494 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Atp5mc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	62,248,091 - 62,255,913 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	10,908,881 - 10,918,445 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	10,908,915 - 10,918,445 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP5MC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	18,871,026 - 18,879,609 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	18,871,025 - 18,879,933 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	19,407,979 - 19,415,736 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Atp5mc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624904	1,742,367 - 1,751,250 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Atp5mc2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	260,415,380 - 260,423,860 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in ATP5MC2
222 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008003473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037996999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073020822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073020823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073020824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_073020825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC238856	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JBLKOC010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000003503 ⟹ ENSCSAP00000001776

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	11	49,768,783 - 49,780,081 (-)	Ensembl

RefSeq Acc Id:

XM_008003473 ⟹ XP_008001664

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	11	49,768,977 - 49,780,664 (-)	NCBI
Vero_WHO_p1.0	NW_023666037	196,264,489 - 196,276,629 (+)	NCBI

Sequence:

show sequence

CCTGGAGTGACCATGCAACATTACAGCGAGTCGCGAGTGCCCGTTATTCCTAGACTGTCCCAGG
ACCCAGGAAAGAGAGATTCGGATCATATTTAGCCCTATCTTCTGGCTCGCTGTTGCTGCTTTCT
CATGGTTTATTACCAGAATGGAAAGGAGGAAACGGGAAGGGGGGAAAGGGCGAAGCCACCAGAA
GCAGCTGCGGCATTTTGCTGACTATTCCCCCATTGAGCCGGTTTGCCATCCAGTGATGCCAGGG
TCCCGGCGCGACAGAAAGCAGGACTCCCAAGATCTTCCTCCTGCTGCATTTTAGGCACTGAACC
CCATTCCTGACTGTATGTTAACACTGAATTCTGAGTAGGAGTTTTGTTGTCTTGGCAGTGTGAC
TGCGCATGCTCGGAAAGGGGGCGCAAGTCCGCGATCCCAAACGTGCTACAGACCGAACCGCCGG
CCACGTTACGGATCCGCTTACTCTGCGGAGTTGGCCTCATTTCTGCACTGTCGGCGCTCGCTGT
AGTTTCTCTTCTCGAACGCCAGGTGGAGCAACTGGCCGGATACCGCCACAGCCCTGGCAGGCGG
CGCTGTGATGCCTGAGCTGATCCTCTATGTTGCAATCACTCTATCCGTGGTGGAGCGACTCGTT
GGCCCAGGCCACGCATGCGCTGAGCCTTCCTTTCGCTATTCCCGCTGTTCCGCCCCTCTCTGTC
TTCTCTGCACTGGGAGAAGCTCTCCTGCCACAGCCCCTCACCCCCTGAAAATGTTCGCCTGCTC
CAGGTTCATCTCCACTCCCTCCTTGGTCAAGAGCACCTCACAGCTGCTGAGCCGTCCGCTATCT
GCAGTGGTGCTGAAACGACCGGAGATACTGACAGATGAGAGCCTCAGCAGCTTGGCAGTCTCAC
GTCCCCTTACCTCACTTGTCTCTAGCCGCAGCTTCCAAACCAGCGCCATTTCAAGGGACATCGA
CACAGCAGCCAAGTTCATTGGAGCTGGGGCTGCCACAGTTGGGGTGGCTGGCTCTGGGGCTGGG
ATTGGGACTGTGTTTGGGAGCCTCATCATCGGTTATGCCAGGAACCCTTCTCTGAAGCAGCAGC
TCTTCTCCTACGCCATTCTGGGCTTTGCCCTCTCAGAGGCCATGGGGCTCTTTTGCCTGATGGT
GGCCTTTCTCATCCTCTTCGCCATGTGAAGGAGCCGTCTCCACCTCCCATAGTTCTTTCTCCCG
TGTCTGGTCGGCCCTGTGTGTTCCTTTTCCTATACCTCCCAGGCGGCCTGGGGAACGTGGTTGG
CTCAGGGTTTGACAGAGAAAAGACAAATAAATACTGTATTAATAAGATG

hide sequence

RefSeq Acc Id:

XM_037996999 ⟹ XP_037852927

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666037	196,268,963 - 196,276,629 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_008001664	(Get FASTA)	NCBI Sequence Viewer
	XP_072876923	(Get FASTA)	NCBI Sequence Viewer
	XP_072876924	(Get FASTA)	NCBI Sequence Viewer
	XP_072876925	(Get FASTA)	NCBI Sequence Viewer
	XP_072876926	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000001776
	ENSCSAP00000001776.1

RefSeq Acc Id:	XP_008001664 ⟸ XM_008003473
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9QZI7 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000001776 ⟸ ENSCSAT00000003503

RefSeq Acc Id:	XP_037852927 ⟸ XM_037996999
- Peptide Label:	isoform X2

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000005468	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000003503.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.20.10	UniProtKB/TrEMBL
InterPro	ATP_synth_F0_csu	UniProtKB/TrEMBL
	ATP_synth_F0_csu_DDCD_BS	UniProtKB/TrEMBL
	ATP_synth_F0_csu_sf	UniProtKB/TrEMBL
	ATPase_proteolipid_c-like_dom	UniProtKB/TrEMBL
	F/V-ATP_Csub_sf	UniProtKB/TrEMBL
KEGG Report	csab:103238407	UniProtKB/TrEMBL
NCBI Gene	ATP5MC2	ENTREZGENE
PANTHER	ATP SYNTHASE F(0) COMPLEX SUBUNIT C1, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR10031	UniProtKB/TrEMBL
Pfam	ATP-synt_C	UniProtKB/TrEMBL
PRINTS	ATPASEC	UniProtKB/TrEMBL
PROSITE	ATPASE_C	UniProtKB/TrEMBL
Superfamily-SCOP	SSF81333	UniProtKB/TrEMBL
UniProt	A0A0D9QZI7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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