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Gene: SH3BGRL3 (SH3 domain binding glutamate rich protein like 3) Chlorocebus sabaeus

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Symbol:

SH3BGRL3

Name:

SH3 domain binding glutamate rich protein like 3

RGD ID:

18440930

Description:

ENCODES a protein that exhibits glutathione transferase activity (ortholog); INVOLVED IN cytoskeleton organization (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); ruffle membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SH3 domain-binding glutamic acid-rich-like protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	106,492,245 - 106,494,844 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	9,926,349 - 9,928,676 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytoskeleton organization (ISO)

Cellular Component

cytosol (ISO)

ruffle membrane (ISO)

Molecular Function

glutathione transferase activity (ISO)

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SH3BGRL3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	106,492,245 - 106,494,844 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	9,926,349 - 9,928,676 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

SH3BGRL3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	26,280,086 - 26,281,522 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	26,280,057 - 26,281,522 (+)	Ensembl			hg38	GRCh38
GRCh37	1	26,606,577 - 26,608,013 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	26,478,800 - 26,480,600 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	26,290,585 - 26,292,154	NCBI
Celera	1	25,002,547 - 25,004,347 (+)	NCBI		Celera
Cytogenetic Map	1	p36.11	NCBI
HuRef	1	24,860,544 - 24,862,344 (+)	NCBI		HuRef
CHM1_1	1	26,719,483 - 26,721,283 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	26,117,570 - 26,119,006 (+)	NCBI		T2T-CHM13v2.0

Sh3bgrl3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	133,854,717 - 133,856,044 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	133,854,717 - 133,856,100 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	134,127,406 - 134,128,733 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	134,127,406 - 134,128,789 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	133,683,321 - 133,684,668 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	133,399,482 - 133,400,829 (-)	NCBI		MGSCv36	mm8
Celera	4	132,308,933 - 132,310,280 (-)	NCBI		Celera
Cytogenetic Map	4	D2.3	NCBI
cM Map	4	66.5	NCBI

Sh3bgrl3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	151,637,897 - 151,639,270 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	151,637,674 - 151,639,395 (-)	Ensembl				GRCr8
mRatBN7.2	5	146,354,152 - 146,355,525 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	146,354,152 - 146,355,331 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	149,056,933 - 149,058,305 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	150,826,501 - 150,827,873 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	150,813,148 - 150,814,520 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	5	151,261,901 - 151,263,274 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	5	153,251,776 - 153,253,149 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	5	152,426,792 - 152,428,165 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	5	145,998,630 - 146,000,003 (-)	NCBI		F344_StmMcwi
Rnor_6.0	5	152,357,270 - 152,358,643 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	152,357,270 - 152,358,643 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	156,043,499 - 156,044,872 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	152,877,343 - 152,878,716 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	144,773,067 - 144,774,442 (-)	NCBI		Celera
RGSC_v3.1	5	152,887,387 - 152,888,692 (-)	NCBI
Cytogenetic Map	5	q36	NCBI

Sh3bgrl3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	5,683,276 - 5,684,760 (+)	Ensembl
ChiLan1.0	NW_004955452	5,683,276 - 5,684,760 (+)	NCBI	ChiLan1.0	ChiLan1.0

SH3BGRL3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	200,590,151 - 200,591,928 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	199,688,322 - 199,690,099 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	25,540,781 - 25,542,558 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	26,608,763 - 26,610,552 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

SH3BGRL3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	73,737,411 - 73,738,902 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	73,737,413 - 73,738,907 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	70,314,083 - 70,315,573 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	74,300,917 - 74,302,405 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	74,300,918 - 74,302,411 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	71,125,391 - 71,126,881 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	72,131,190 - 72,132,680 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	73,135,094 - 73,136,591 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sh3bgrl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	44,952,040 - 44,953,517 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	10,776,725 - 10,778,299 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	10,776,700 - 10,778,299 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SH3BGRL3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	83,687,604 - 83,689,565 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	83,687,473 - 83,689,076 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

Sh3bgrl3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	10,317,031 - 10,318,635 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624764	10,317,026 - 10,318,562 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sh3bgrl3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	24,111,867 - 24,113,209 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in SH3BGRL3
48 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007979921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JBLKOC010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_007979921 ⟹ XP_007978112

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	106,492,245 - 106,494,844 (-)	NCBI
Vero_WHO_p1.0	NW_023666033	9,926,349 - 9,928,676 (+)	NCBI

Sequence:

show sequence

GCCAGGTCCCCCAGGTAGCAGCATGGAGGAACCTGTGTCAGGTCCAGCCTCCTCTCTCTCTGCC
AGTTGTGCTCCTCTGTCGTTCTGTAGGACCAGATCTCTTCCCACACACTTTCTGTTAGGCAAAC
TTTCCCCGAGTCACAGCAGAAGTTTGTCACTGGAAAGTTTCAGCAGTCCTGGCAGGAAGTTGGC
AGCCTCTGGGTTGCTGTGAGGAAGTGGCTTTACCAGAGCAAGGGTTGTCTTTCTGGGCTGTTAC
CTGCCTGAACCCTGGACTAGGGGGACATCTGAGAAGCATTATGTTGAATGCCAGATAGCTAGGT
TTCTAAAACTGGGTTGGTTGCTGGAGTCTGTCCCCTCAACTCCTGAATTGCTGGGAGTAGCAGC
AGTTTGGGGCATGCATGCATGGAGCTGGGGTTGACCTTGGACCACCCCAAGACCAGGGGTGGAT
CTCAAGGGTCAGCTTGACCCTAAGGTCTCAAGAATCCTGACACCACCCTCTACCGCCACACTTC
CCAGCTGTCAGCCTTGGTCTCCATCTGGTTCCTTGGGGGTGTGGCCTCTGCATCCTGCCACCAC
CCTCCCTTGTCTAAACCTTCCCACCTGAGTGGAGAGGAACTTGGGGGCGAAATGTAAGCATGGG
CTCTTCCTGCTGTCCTATGCTTCCTATCCCCTAGGGTTAGTGGTGTGTTGGGGGGGGGGGAGAG
GGGGGTTCCCTTGGAGCAAGGTACCTTAATATGGGAACTTTGGGTCTGAAAGCAGCTCAAGCCT
TCCAAAGCCCCAAGCTGCCCTGTACTATTTAGGGCACCTCCTCCTGGAGACAGCGGCTCTCGTA
GATGGGAAGTTGGATGCACCAAACCTGTGTGCGGTTGGAAAGGCGGCTTCTGCCAGACCCTCTC
CCGGGCCTGTCCTGCCACCCAGCTCCTCCCCAGGCACACTGAGCTCCAGATCAGGGAAGGGCCG
AAAAGGACGAGCAGGGCAGCTACAGAAGGGGCGGCCCTGCGTGGGACGGGTCCCTCTGCGCGCC
TGGTCACCCAGGGGGGAAGGGAAGGGGCCTCCAGCGCGCGGGGCGGTGTCGCGCAGGCCCCGCC
CCGCCTGCCCGCGCCGCCCATTGGTCCCGAGCGCGATGACTTGCGGGCGGAGCAGGAAGGAAAC
CGCTCCCGAGCACGGCGGCGGCGTCGTCTCCCGGCAGTGCAGCTACCACTACTGCCGCTCTCTG
CCCGCCGACCCGTCCACCCCCAGCATGAGCGGCCTGCGCGTCTACAGCACGTCGGTCACCGGCT
CCCGCGAAATCAAGTCCCAGCAGAGCGAGGTGACCCGAATCCTGGATGGGAAGCGCATCCAATA
CCAGCTAGTGGACATCTCCCAGGACAACGCCCTGAGGGATGAGATGCGAGCCTTGGCGGGCAAC
CCCAAGGCCACCCCACCCCAGATTGTCAATGGGGACCAGTACTGTGGGGACTATGAGCTCTTCG
TGGAGGCCGTGGAACAAAACACGCTGCAGGAGTTCCTGAAGCTGGCCTGAGTCAAGCCTGTCCA
GAGTTCCCCTGCTGGACTCCATCACCACACTCCCCCAAGCCTTCACCTGGCCATGAAGGACCTT
TTGACCAACTCCCTGTCATTCCTATCCTAACCTTAGAGTCCCTCCCGCAATCCAGGCCACTTCT
CCTCCCTCCTCTCTAAATGTAGTCCCCTCTTCTCCATCCAAAGGCAACATTCCTTACCCATTAG
TCTCAGAAATTGTCTTAAGCAACAGCCCCAAATGCTGACTGCCCCCAGCCAAGCATTGGGGCCG
CCATCCTGCCTGGCATTGGCTGATGAGCACCTCTATTGGTTCCATCAGCCAGAGCTCTGCCAAA
GGCCCCGCAGTCCCTCTCCCAGGAGGACCCTAGAGACAATTAAATGATGTCCTGTTCCATTGGC
A

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Protein Sequences


Protein RefSeqs	XP_007978112	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_007978112 ⟸ XM_007979921

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	SH3BGRL3	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD