Sh3bgrl3 (SH3 domain binding glutamate rich protein like 3) - Rat Genome Database

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Gene: Sh3bgrl3 (SH3 domain binding glutamate rich protein like 3) Chinchilla lanigera
Analyze
Symbol: Sh3bgrl3
Name: SH3 domain binding glutamate rich protein like 3
RGD ID: 8723537
Description: ENCODES a protein that exhibits glutathione transferase activity (ortholog); INVOLVED IN cytoskeleton organization (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog); ruffle membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SH3 domain binding glutamate-rich protein like 3; SH3 domain binding glutamic acid-rich protein like 3; SH3 domain-binding glutamic acid-rich-like protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554525,683,276 - 5,684,760 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554525,683,276 - 5,684,760 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Sh3bgrl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554525,683,276 - 5,684,760 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554525,683,276 - 5,684,760 (+)NCBIChiLan1.0ChiLan1.0
SH3BGRL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,280,086 - 26,281,522 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,280,086 - 26,281,522 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,606,577 - 26,608,013 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,478,800 - 26,480,600 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,290,585 - 26,292,154NCBI
Celera125,002,547 - 25,004,347 (+)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef124,860,544 - 24,862,344 (+)NCBIHuRef
CHM1_1126,719,483 - 26,721,283 (+)NCBICHM1_1
T2T-CHM13v2.0126,117,570 - 26,119,006 (+)NCBIT2T-CHM13v2.0
Sh3bgrl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394133,854,717 - 133,856,044 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4133,854,717 - 133,856,100 (-)EnsemblGRCm39 Ensembl
GRCm384134,127,406 - 134,128,733 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4134,127,406 - 134,128,789 (-)EnsemblGRCm38mm10GRCm38
MGSCv374133,683,321 - 133,684,668 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364133,399,482 - 133,400,829 (-)NCBIMGSCv36mm8
Celera4132,308,933 - 132,310,280 (-)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.5NCBI
Sh3bgrl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85151,637,897 - 151,639,270 (-)NCBIGRCr8
mRatBN7.25146,354,152 - 146,355,525 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5146,354,152 - 146,355,331 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5149,056,933 - 149,058,305 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05150,826,501 - 150,827,873 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05150,813,148 - 150,814,520 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05152,357,270 - 152,358,643 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5152,357,270 - 152,358,643 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05156,043,499 - 156,044,872 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45152,877,343 - 152,878,716 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15152,887,387 - 152,888,692 (-)NCBI
Celera5144,773,067 - 144,774,442 (-)NCBICelera
Cytogenetic Map5q36NCBI
SH3BGRL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21200,590,151 - 200,591,928 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11199,688,322 - 199,690,099 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0125,540,781 - 25,542,558 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,608,763 - 26,610,552 (+)NCBIpanpan1.1PanPan1.1panPan2
SH3BGRL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1273,737,411 - 73,738,902 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl273,737,413 - 73,738,907 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha270,314,083 - 70,315,573 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0274,300,917 - 74,302,405 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl274,300,918 - 74,302,411 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1271,125,391 - 71,126,881 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0272,131,190 - 72,132,680 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0273,135,094 - 73,136,591 (-)NCBIUU_Cfam_GSD_1.0
Sh3bgrl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505844,952,040 - 44,953,517 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647410,776,725 - 10,778,299 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647410,776,700 - 10,778,299 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH3BGRL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl683,687,604 - 83,689,565 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1683,687,473 - 83,689,076 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SH3BGRL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120106,492,245 - 106,494,844 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660339,926,349 - 9,928,676 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh3bgrl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476410,317,031 - 10,318,635 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476410,317,026 - 10,318,562 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011713   ⟹   ENSCLAP00000011576
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554525,683,276 - 5,684,760 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000011714   ⟹   ENSCLAP00000011577
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554525,683,419 - 5,684,385 (+)Ensembl
RefSeq Acc Id: XM_005394851   ⟹   XP_005394908
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554525,683,276 - 5,684,760 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005394908 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011576
  ENSCLAP00000011576.1
  ENSCLAP00000011577.1
Reference Protein Sequences
RefSeq Acc Id: XP_005394908   ⟸   XM_005394851
- UniProtKB: A0A8C2VCZ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011576   ⟸   ENSCLAT00000011713
RefSeq Acc Id: ENSCLAP00000011577   ⟸   ENSCLAT00000011714


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007979 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011713 ENTREZGENE
  ENSCLAT00000011713.1 UniProtKB/TrEMBL
  ENSCLAT00000011714.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Glut_rich_SH3-bd UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
NCBI Gene Sh3bgrl3 ENTREZGENE
PANTHER SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN UniProtKB/TrEMBL
  SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN 3 UniProtKB/TrEMBL
Pfam SH3BGR UniProtKB/TrEMBL
PIRSF SH3-bind_E-rich_L UniProtKB/TrEMBL
PROSITE GLUTAREDOXIN_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A8C2V7V2_CHILA UniProtKB/TrEMBL
  A0A8C2VCZ1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Sh3bgrl3  SH3 domain binding glutamate rich protein like 3    SH3 domain binding glutamate-rich protein like 3  Symbol and/or name change 5135510 APPROVED
2015-08-25 Sh3bgrl3  SH3 domain binding glutamate-rich protein like 3    SH3 domain binding glutamic acid-rich protein like 3  Symbol and/or name change 5135510 APPROVED