Acot3 (acyl-CoA thioesterase 3) - Rat Genome Database

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Gene: Acot3 (acyl-CoA thioesterase 3) Rattus norvegicus
Analyze
Symbol: Acot3
Name: acyl-CoA thioesterase 3
RGD ID: 1564089
Description: Predicted to enable fatty acyl-CoA hydrolase activity. Predicted to be involved in acyl-CoA metabolic process and carboxylic acid metabolic process. Predicted to be located in cytosol and peroxisome. Orthologous to human ACOT1 (acyl-CoA thioesterase 1) and ACOT2 (acyl-CoA thioesterase 2); PARTICIPATES IN unsaturated fatty acid biosynthetic pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC314304; RGD1564089; similar to peroxisomal long chain acyl-CoA thioesterase Ia
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86109,413,617 - 109,419,840 (+)NCBIGRCr8
mRatBN7.26103,682,518 - 103,688,735 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6103,723,326 - 103,729,482 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl6103,682,596 - 103,688,427 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6103,844,339 - 103,850,278 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06104,143,555 - 104,149,494 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06103,513,007 - 103,518,946 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06107,531,508 - 107,537,446 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6107,531,528 - 107,536,789 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06118,006,796 - 118,012,735 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46108,089,349 - 108,095,288 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6101,512,523 - 101,518,456 (+)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
acetamide  (EXP)
Acetyl tributyl citrate  (ISO)
aflatoxin B1  (EXP)
amiodarone  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
ciprofibrate  (EXP,ISO)
clofibrate  (EXP,ISO)
Cuprizon  (EXP)
cyproconazole  (EXP)
decabromodiphenyl ether  (EXP)
dibenzofurans  (ISO)
dichloroacetic acid  (ISO)
diquat  (ISO)
epoxiconazole  (EXP,ISO)
ethanol  (ISO)
fenofibrate  (EXP)
finasteride  (EXP)
folic acid  (ISO)
GW 4064  (ISO)
indole-3-methanol  (EXP)
indometacin  (EXP)
inulin  (ISO)
metformin  (EXP)
methotrexate  (ISO)
N-nitrosodiethylamine  (EXP)
paracetamol  (ISO)
parathion  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
permethrin  (ISO)
phenobarbital  (EXP,ISO)
pirinixic acid  (EXP,ISO)
pravastatin  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
prochloraz  (EXP)
quercetin  (ISO)
rotenone  (EXP)
senecionine  (ISO)
sodium arsenite  (ISO)
sulfasalazine  (ISO)
tamoxifen  (ISO)
tetrachloroethene  (ISO)
titanium dioxide  (ISO)
tributylstannane  (ISO)
trichloroethene  (ISO)
Triptolide  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
peroxisome  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15007068   PMID:16940157  


Genomics

Comparative Map Data
Acot3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86109,413,617 - 109,419,840 (+)NCBIGRCr8
mRatBN7.26103,682,518 - 103,688,735 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6103,723,326 - 103,729,482 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl6103,682,596 - 103,688,427 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6103,844,339 - 103,850,278 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06104,143,555 - 104,149,494 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06103,513,007 - 103,518,946 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06107,531,508 - 107,537,446 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6107,531,528 - 107,536,789 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06118,006,796 - 118,012,735 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46108,089,349 - 108,095,288 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6101,512,523 - 101,518,456 (+)NCBICelera
Cytogenetic Map6q31NCBI
Acot3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391284,098,918 - 84,107,174 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1284,098,918 - 84,107,176 (+)EnsemblGRCm39 Ensembl
GRCm381284,052,144 - 84,060,400 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1284,052,144 - 84,060,402 (+)EnsemblGRCm38mm10GRCm38
MGSCv371285,393,101 - 85,400,515 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361284,941,899 - 84,949,313 (+)NCBIMGSCv36mm8
Celera1285,498,576 - 85,506,034 (+)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1239.02NCBI

Variants

.
Variants in Acot3
26 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:84
Count of miRNA genes:68
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000051235
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
634330Pia16Pristane induced arthritis QTL 163.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)645790088104200226Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)689762877106752806Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
1558641Cm47Cardiac mass QTL 472.90.001heart mass (VT:0007028)heart wet weight (CMO:0000069)657730540104085867Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)681132889104393926Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
6893332Cm74Cardiac mass QTL 740.40.64heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)657730540104085867Rat
1300076Glom8Glomerulus QTL 879e-09kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000039048   ⟹   ENSRNOP00000086778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6103,682,596 - 103,688,427 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077555   ⟹   ENSRNOP00000073103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6103,723,326 - 103,729,482 (-)Ensembl
Rnor_6.0 Ensembl6107,531,528 - 107,536,789 (+)Ensembl
RefSeq Acc Id: NM_001108041   ⟹   NP_001101511
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,413,697 - 109,419,636 (+)NCBI
mRatBN7.26103,682,596 - 103,688,535 (+)NCBI
Rnor_6.06107,531,508 - 107,537,446 (+)NCBI
Rnor_5.06118,006,796 - 118,012,735 (-)NCBI
RGSC_v3.46108,089,349 - 108,095,288 (+)RGD
Celera6101,512,523 - 101,518,456 (+)RGD
Sequence:
RefSeq Acc Id: XM_039112303   ⟹   XP_038968231
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,413,620 - 109,419,840 (+)NCBI
mRatBN7.26103,682,520 - 103,688,735 (+)NCBI
RefSeq Acc Id: XM_039112305   ⟹   XP_038968233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,413,619 - 109,419,840 (+)NCBI
mRatBN7.26103,682,519 - 103,687,843 (+)NCBI
RefSeq Acc Id: XM_039112306   ⟹   XP_038968234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86109,413,617 - 109,419,025 (+)NCBI
mRatBN7.26103,682,518 - 103,687,843 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101511 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968231 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968233 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968234 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL81472 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000086778.1
RefSeq Acc Id: NP_001101511   ⟸   NM_001108041
- UniProtKB: A0A8I6A6H9 (UniProtKB/TrEMBL),   A6JDS8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073103   ⟸   ENSRNOT00000077555
RefSeq Acc Id: XP_038968234   ⟸   XM_039112306
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038968233   ⟸   XM_039112305
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038968231   ⟸   XM_039112303
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000086778   ⟸   ENSRNOT00000039048
Protein Domains
Acyl-CoA thioester hydrolase/bile acid-CoA amino   BAAT/Acyl-CoA thioester hydrolase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K4M8-F1-model_v2 AlphaFold A0A0G2K4M8 1-429 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694717
Promoter ID:EPDNEW_R5241
Type:initiation region
Name:Acot3_1
Description:acyl-CoA thioesterase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06107,531,465 - 107,531,525EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564089 AgrOrtholog
BioCyc Gene G2FUF-36843 BioCyc
BioCyc Pathway PWY-5148 [acyl-CoA hydrolysis] BioCyc
  PWY-5972 [stearate biosynthesis I (animals)] BioCyc
  PWY-5996 [oleate biosynthesis II (animals and fungi)] BioCyc
  PWY-8042 [acylceramide biosynthesis] BioCyc
  PWY3O-1801 [palmitoleate biosynthesis IV (fungi and animals)] BioCyc
BioCyc Pathway Image PWY-5148 BioCyc
  PWY-5972 BioCyc
  PWY-5996 BioCyc
  PWY-8042 BioCyc
  PWY3O-1801 BioCyc
Ensembl Genes ENSRNOG00000027960 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000053460 Ensembl
Ensembl Transcript ENSRNOT00000039048.6 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.2240 UniProtKB/TrEMBL
  3.40.50.1820 UniProtKB/TrEMBL
InterPro AB_hydrolase UniProtKB/TrEMBL
  Acyl-CoA_thioEstase_long-chain UniProtKB/TrEMBL
  BAAT_C UniProtKB/TrEMBL
  Thio_Ohase/aa_AcTrfase UniProtKB/TrEMBL
  Thio_Ohase/BAAT_N UniProtKB/TrEMBL
KEGG Report rno:314304 UniProtKB/TrEMBL
NCBI Gene 314304 ENTREZGENE
PANTHER ACYL-COENZYME A THIOESTERASE 1-RELATED UniProtKB/TrEMBL
  ACYL-COENZYME A THIOESTERASE-RELATED UniProtKB/TrEMBL
Pfam BAAT_C UniProtKB/TrEMBL
  Bile_Hydr_Trans UniProtKB/TrEMBL
PhenoGen Acot3 PhenoGen
PIRSF Acyl-CoA_hydro UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027960 RatGTEx
  ENSRNOG00000053460 RatGTEx
Superfamily-SCOP SSF53474 UniProtKB/TrEMBL
UniProt A0A8I6A6H9 ENTREZGENE, UniProtKB/TrEMBL
  A6JDS8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Acot3  acyl-CoA thioesterase 3  RGD1564089_predicted  similar to peroxisomal long chain acyl-CoA thioesterase Ia (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564089_predicted  similar to peroxisomal long chain acyl-CoA thioesterase Ia (predicted)  LOC314304  similar to peroxisomal long chain acyl-CoA thioesterase Ia  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC314304  similar to peroxisomal long chain acyl-CoA thioesterase Ia      Symbol and Name status set to provisional 70820 PROVISIONAL