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Gene: Pbdc1 (polysaccharide biosynthesis domain containing 1) Rattus norvegicus

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Symbol:

Pbdc1

Name:

polysaccharide biosynthesis domain containing 1

RGD ID:

1562502

Description:

Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC363485; LOC363485; RGD1562502; similar to RIKEN cDNA 2610029G23; uncharacterized protein LOC363485

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PBDC1 (polysaccharide biosynthesis domain containing 1)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pbdc1 (polysaccharide biosynthesis domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PBDC1 (polysaccharide biosynthesis domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PBDC1 (polysaccharide biosynthesis domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pbdc1 (polysaccharide biosynthesis domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LOC100515118 (protein PBDC1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PBDC1 (polysaccharide biosynthesis domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pbdc1 (polysaccharide biosynthesis domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PBDC1 (polysaccharide biosynthesis domain containing 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pbdc1 (polysaccharide biosynthesis domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pbdc1 (polysaccharide biosynthesis domain containing 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y54E5A.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG7519	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YPL225W	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pbdc1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	74,219,713 - 74,275,954 (+)	NCBI		GRCr8
mRatBN7.2	X	70,154,106 - 70,197,827 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	70,154,106 - 70,184,552 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	71,663,081 - 71,667,780 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	75,163,366 - 75,168,064 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	72,726,528 - 72,731,226 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	76,042,239 - 76,092,964 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	76,042,239 - 76,046,938 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	76,840,414 - 76,845,113 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	93,151,907 - 93,156,607 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	71,487,174 - 71,491,873 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

autosomal hemophilia A (ISO)

factor VIII deficiency (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-chloropropane-1,2-diol (EXP)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

actinomycin D (ISO)

aflatoxin B1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

captan (ISO)

carbon nanotube (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

decabromodiphenyl ether (ISO)

dicrotophos (ISO)

epoxiconazole (ISO)

finasteride (EXP)

flutamide (EXP)

folic acid (ISO)

folpet (ISO)

FR900359 (ISO)

gentamycin (EXP)

glafenine (EXP)

indole-3-methanol (EXP)

isobutanol (ISO)

ivermectin (ISO)

methimazole (EXP)

Nutlin-3 (ISO)

oxaliplatin (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

pregnenolone 16alpha-carbonitrile (EXP)

quercetin (ISO)

resveratrol (ISO)

sodium dichromate (EXP)

sulfadimethoxine (EXP)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

topotecan (EXP)

trichloroethene (EXP)

valproic acid (ISO)

vinclozolin (EXP)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
2.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Pbdc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	74,219,713 - 74,275,954 (+)	NCBI		GRCr8
mRatBN7.2	X	70,154,106 - 70,197,827 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	70,154,106 - 70,184,552 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	71,663,081 - 71,667,780 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	75,163,366 - 75,168,064 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	72,726,528 - 72,731,226 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	76,042,239 - 76,092,964 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	76,042,239 - 76,046,938 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	76,840,414 - 76,845,113 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	93,151,907 - 93,156,607 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	71,487,174 - 71,491,873 (+)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

PBDC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	76,173,062 - 76,178,314 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	76,173,040 - 76,178,755 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	75,392,897 - 75,398,149 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	75,309,173 - 75,314,436 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	75,175,468 - 75,180,732	NCBI
Celera	X	75,672,493 - 75,677,756 (+)	NCBI		Celera
Cytogenetic Map	X	q13.3	NCBI
HuRef	X	69,025,570 - 69,030,833 (+)	NCBI		HuRef
CHM1_1	X	75,285,292 - 75,290,555 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	74,606,393 - 74,611,646 (+)	NCBI		T2T-CHM13v2.0

Pbdc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	104,123,337 - 104,160,696 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	104,123,362 - 104,160,696 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	105,079,731 - 105,117,094 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	105,079,756 - 105,117,090 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	102,275,114 - 102,280,525 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	101,282,494 - 101,287,905 (+)	NCBI		MGSCv36	mm8
Celera	X	91,943,752 - 91,949,163 (+)	NCBI		Celera
Cytogenetic Map	X	D	NCBI
cM Map	X	46.83	NCBI

PBDC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	75,821,305 - 75,826,743 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	75,825,011 - 75,830,354 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	65,422,688 - 65,428,451 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	75,537,467 - 75,542,884 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	75,537,469 - 75,542,778 (+)	Ensembl	panpan1.1		panPan2

PBDC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	59,068,733 - 59,073,085 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	50,143,489 - 50,149,279 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	60,302,358 - 60,308,150 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	60,302,458 - 60,311,816 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	57,995,612 - 58,001,403 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	59,609,520 - 59,615,316 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	59,208,462 - 59,214,254 (+)	NCBI		UU_Cfam_GSD_1.0

Pbdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	43,019,270 - 43,025,160 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936683	1,922,346 - 1,930,163 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936683	1,922,633 - 1,928,510 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100515118
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	60,907,404 - 61,019,857 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	60,907,393 - 60,915,607 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	69,309,124 - 69,317,256 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PBDC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	65,511,974 - 65,517,238 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	65,512,044 - 65,517,211 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666067	16,069,799 - 16,075,037 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pbdc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624836	4,816,727 - 4,820,603 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624836	4,816,565 - 4,821,490 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Pbdc1
132 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	264
Count of miRNA genes:	182
Interacting mature miRNAs:	199
Transcripts:	ENSRNOT00000003667
Prediction methods:	Microtar, Miranda, Pita
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	65612192	120568734	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	41304447	112935181	Rat
1598837	Memor13	Memory QTL 13	3.2		exploratory behavior trait (VT:0010471)	difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	41052407	146860749	Rat

Markers in Region

RH129657

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	11	30,900,584 - 30,900,764	NCBI	Rnor5.0
Rnor_5.0	X	76,844,738 - 76,844,918	NCBI	Rnor5.0
Rnor_5.0	11	31,051,926 - 31,052,106	NCBI	Rnor5.0
RGSC_v3.4	11	27,383,989 - 27,384,168	UniSTS	RGSC3.4
RGSC_v3.4	X	93,156,233 - 93,156,412	UniSTS	RGSC3.4
Celera	11	26,602,670 - 26,602,849	UniSTS
Celera	X	71,491,499 - 71,491,678	UniSTS
Cytogenetic Map	X	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003667 ⟹ ENSRNOP00000003667

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	70,154,106 - 70,184,552 (+)	Ensembl
Rnor_6.0 Ensembl	X	76,042,239 - 76,046,938 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105988 ⟹ ENSRNOP00000096521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	70,154,743 - 70,161,810 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107443 ⟹ ENSRNOP00000095875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	70,154,743 - 70,161,810 (+)	Ensembl

RefSeq Acc Id:

NM_001108818 ⟹ NP_001102288

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	74,219,713 - 74,224,412 (+)	NCBI
mRatBN7.2	X	70,154,106 - 70,158,805 (+)	NCBI
Rnor_6.0	X	76,042,239 - 76,046,938 (+)	NCBI
Rnor_5.0	X	76,840,414 - 76,845,113 (+)	NCBI
RGSC_v3.4	X	93,151,907 - 93,156,607 (+)	RGD
Celera	X	71,487,174 - 71,491,873 (+)	RGD

Sequence:

show sequence

AAATTCATCGTACAAAGCTCCTGATTGGACTATCTTCCAGCTAGACTGTTCTTTGCAAGGTATT
TTAATGCTTTTTCACTAATACCTTTACCATCCATGCTCCCTCTGCCTCCAGTCTTTCTGACCTG
CTAGCTTAAGCGCCCATCATGACTCAGCTCAGGTCTGCTCCCAGTGTATGATGATGCTCACCTC
GTTGTTACCTCACTCAGCTAGTTCTTCCAAAAGAGGTAGCAAATCCTTCTTCATCTCTGATTTC
CCCCATCCTGCTTCCAGTACCTAGCCTGGCGTGCGGGCGTGCGTGTGGATGCGCTCGCGTGAAA
TGGGAACACGGCACACAGGGGACTTAAAAACAGCATCATTTTTTAAAAAATGTTTAATTTTTTT
CATACAACTTATTTTCCCCATTGATTTATTGAATAGTCTAACACCTTGGCTAGAGGAATAGCGT
TGCTAAGTAACAACACGCCACCTTGTCTGGCGCCTGCGTGGCCCGGATAAGGCGGAGCCACAGC
TTCCTCTGCAAAGGGAGGGCACACGCAGGCGCAGACGGGAAAGCTGGTCTCCGTTTCCGCCCTA
TTGCTTTCAATTAACTGTTGAAGCAGCGCGCGCAACAGGTCACTTCCGGGAAGGGGAAGCCGCA
CTTACCTAGCGGCAACATGGATGCTGCCAGCGAAAGCGAAGAGCCGGTTTCTGGGGAAGCGTTG
TCCATCGCCCATGCTCTTTCTTACCCTCCCGAGTCATATGGCAACGACCCTGATATTGAAATGG
CTTGGGCCATTCGAGCAATGCAGCATGCTGAAGTCTATTATAAACTGATTTCATCAGTTGACCC
ACAGTTTCTGAAACTCACCAAGGTGGATGACCAAATCTACTCTGAGTTCCGGGAAAATTTTGAG
ACACTCAGGATAGATGTATTGGACCCAGAAGAACTCAAATCAGAATCAGCTAAAGAGAAGTGGA
GACCATTCTGTTTAAAATTCGAAGGGATCGTAGAAGATTACAACTATGGTACTTTGCTGCGACT
GGATTGTTCTCAGGGCTACACTGAAGAGAACACTATCTTTGCACCCAGGATTCAATTTTTTGCC
ATTGAAATTGCTCGGAACCGGGAAGGCTATAACAAAGCAGTTTCCGTCAGTGTTCAGGACAAAG
AAGGAAAGGAAGGAGCTGACAATAAAGAAGAGGAAGCTGAGAAAGGAGCTGATAGTGGAGGAGA
AAAAGAGGAAGGAGTCAACAGAGAAGGAGAAAAGTAAAAAACTAAACAAGGGAGGAGAAAAAGT
CAAGAAACCTGTGACTCAGCTGAACCCACACATGTCTGTGCTGCTCACACAGCCCCCATTGGTT
AAATGATGCCCTTGTGCAAGTGGAGGACTCAGAGGGACATCTTTCTAGCTAGCAAGAGAAGCTA
CTCTGGGCATAATAGCTTAAACACGATTAGTGGAGTCTCTTCGTTCATTATTGCTTGATACCTT
GTTTCTTGGCTGTAACTGTTGTTGAAATAAGACATTTTGTAAATAAATTCCTTTTGGTTTATTT
TACTTATGACTGACTTTAGAAAGTATTTACATTTATTTGACACTTCAAAAAATCAGGTATATAG
TCTCATCACTATCTCATATAAAACTATCT

hide sequence

RefSeq Acc Id:

XM_008773349 ⟹ XP_008771571

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	74,220,330 - 74,275,954 (+)	NCBI
mRatBN7.2	X	70,154,650 - 70,197,827 (+)	NCBI
Rnor_6.0	X	76,042,799 - 76,092,964 (+)	NCBI

Sequence:

show sequence

CTCCGTTTCCGCCCTATTGCTTTCAATTAACTGTTGAAGCAGCGCGCGCAACAGGTCACTTCCG
GGAAGGGGAAGCCGCACTTACCTAGCGGCAACATGGATGCTGCCAGCGAAAGCGAAGAGCCGGT
TTCTGGGGAAGCGTTGTCCATCGCCCATGCTCTTTCTTACCCTCCCGAGTCATATGGCAACGAC
CCTGATATTGAAATGGCTTGGGCCATTCGAGCAATGCAGCATGCTGAAGTCTATTATAAACTGA
TTTCATCAGTTGACCCACAGTTTCTGAAACTCACCAAGGTGGATGACCAAATCTACTCTGAGTT
CCGGGAAAATTTTGAGACACTCAGGATAGATGTATTGGACCCAGAAGAACTCAAATCAGAATCA
GCTAAAGAGAAGTGGAGACCATTCTGTTTAAAATTCGAAGGGATCGTAGAAGATTACAACTATG
GTACTTTGCTGCGACTGGATTGTTCTCAGGGCTACACTGAAGAGAACACTATCTTTGGTGAGAA
TATCTCAATAAACGGTGACAGAAATTTGATAACTAAATGGCAGTCATTGAAACTGGATGAAAAT
ATGTGATGGGATGAAATACTTAGGTCTCAGATAACCACACAAAATGCAAAGACTAAAAGGTAAC
TCCACCAGAAATTCCAGTCATTAAATGCCAAAAGGGAGAAAAGTGGGAAATAGCAAGGAGTTTT
TAGGGCAGTTGCTTAAACTGAAGATTCAATAGTGTTTGTACTTCCTCCCTTCTTGACAGTAGTA
TTATTGACATTCAGGATTTAACTGAAATTATCTTCTAATGAGTTCAGATTAAATGACTACTTTT
TCAGGTAGAACCCATCATTCCTAGCAAAATCTAAGCTCTCTAGAAGAGTACATGGAATTGTCAT
TTCGTTTTTATCTCTTACAATTTATTCCTAAACTCTGTACAACCAGGGTTTTCTTCCACCACTC
TACTTCGGTTGCTCACAATGTAGGTAATAACATACAAATTGATAAATCCACTGATCACTTATCA
AGCACCAATCTTTTAGTGACTTTTGACATAATTATTTTTTTACCTTTCTAAACATATTACACAC
ATTGAAATAATAGTTTCACAATCTTCCCGCTCCACTAACAACAGTTATTTTTCCTCTTTAAATT
TTAGGAATACACTAGAATTAGTCCTAGAGCCTGTTTTTGTTTTTGTTTTCTTTTTTTTTTCAAG
GACAAAAGCTTGTTTTATTTTAATGGCTGATCCACGAGAGGCCACAGCCAGGCCACTATGTACA
GACATGAGGGAAGCTTCATTTCTTGGTCTCTTCCTCCTTGGACAGAGTCTTGATGATCTCCTCC
TTCTTTGCCTGGAGGCGCTCCTCCCAGCGCTTTCATGCTTCCTTGGTTTTAGACCTACGAGTCT
CAGCCTGGTCAGCCAGTAGCTTCTTGCGAGCCTTGTCTGCCTTCAGTTTGTGAATG

hide sequence

RefSeq Acc Id:

XM_063280150 ⟹ XP_063136220

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	74,220,330 - 74,250,598 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102288	(Get FASTA)	NCBI Sequence Viewer
	XP_008771571	(Get FASTA)	NCBI Sequence Viewer
	XP_063136220	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66918	(Get FASTA)	NCBI Sequence Viewer
	EDM07154	(Get FASTA)	NCBI Sequence Viewer
	EDM07155	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003667.5
	ENSRNOP00000095875.1
	ENSRNOP00000096521.1

RefSeq Acc Id:

NP_001102288 ⟸ NM_001108818

- UniProtKB:

A0A8I6GM43 (UniProtKB/TrEMBL), A6IV25 (UniProtKB/TrEMBL), A0A8I6AQ18 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDAASESEEPVSGEALSIAHALSYPPESYGNDPDIEMAWAIRAMQHAEVYYKLISSVDPQFLKL
TKVDDQIYSEFRENFETLRIDVLDPEELKSESAKEKWRPFCLKFEGIVEDYNYGTLLRLDCSQG
YTEENTIFAPRIQFFAIEIARNREGYNKAVSVSVQDKEGKEGADNKEEEAEKGADSGGEKEEGV
NREGEK

hide sequence

RefSeq Acc Id:	XP_008771571 ⟸ XM_008773349
- Peptide Label:	isoform X1
- UniProtKB:	G3V6C3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDAASESEEPVSGEALSIAHALSYPPESYGNDPDIEMAWAIRAMQHAEVYYKLISSVDPQFLKL TKVDDQIYSEFRENFETLRIDVLDPEELKSESAKEKWRPFCLKFEGIVEDYNYGTLLRLDCSQG YTEENTIFGENISINGDRNLITKWQSLKLDENM hide sequence

Ensembl Acc Id:

ENSRNOP00000003667 ⟸ ENSRNOT00000003667

Ensembl Acc Id:

ENSRNOP00000095875 ⟸ ENSRNOT00000107443

Ensembl Acc Id:

ENSRNOP00000096521 ⟸ ENSRNOT00000105988

RefSeq Acc Id:	XP_063136220 ⟸ XM_063280150
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-G3V6C3-F1-model_v2	AlphaFold	G3V6C3	1-198	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562502	AgrOrtholog
BioCyc Gene	G2FUF-1966	BioCyc
Ensembl Genes	ENSRNOG00000002662	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003667.6	UniProtKB/TrEMBL
	ENSRNOT00000105988.1	UniProtKB/TrEMBL
	ENSRNOT00000107443.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.3560.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:6918266	IMAGE-MGC_LOAD
InterPro	UPF0368_met/fun	UniProtKB/TrEMBL
	Yst0336-like_domain	UniProtKB/TrEMBL
KEGG Report	rno:363485	UniProtKB/TrEMBL
MGC_CLONE	MGC:188906	IMAGE-MGC_LOAD
NCBI Gene	363485	ENTREZGENE
PANTHER	DUF757	UniProtKB/TrEMBL
	PROTEIN PBDC1	UniProtKB/TrEMBL
Pfam	DUF579	UniProtKB/TrEMBL
PhenoGen	Pbdc1	PhenoGen
RatGTEx	ENSRNOG00000002662	RatGTEx
UniProt	A0A8I6AQ18	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GM43	ENTREZGENE, UniProtKB/TrEMBL
	A6IV25	ENTREZGENE, UniProtKB/TrEMBL
	G3V6C3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-12-10	Pbdc1	polysaccharide biosynthesis domain containing 1	RGD1562502	similar to RIKEN cDNA 2610029G23	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1562502	similar to RIKEN cDNA 2610029G23	RGD1562502_predicted	similar to RIKEN cDNA 2610029G23 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562502_predicted	similar to RIKEN cDNA 2610029G23 (predicted)	LOC363485	similar to RIKEN cDNA 2610029G23	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC363485	similar to RIKEN cDNA 2610029G23			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar