NTN5 (netrin 5) - Rat Genome Database

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Pathways
Gene: NTN5 (netrin 5) Sus scrofa
Analyze
Symbol: NTN5
Name: netrin 5
RGD ID: 14297734
Description: INVOLVED IN neurogenesis (ortholog); FOUND IN extracellular region (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: netrin-5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,006,665 - 54,017,166 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1654,006,662 - 54,019,282 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,753,999 - 49,766,587 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
NTN5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,006,665 - 54,017,166 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1654,006,662 - 54,019,282 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,753,999 - 49,766,587 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NTN5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381948,661,407 - 48,673,017 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1948,661,407 - 48,673,081 (-)Ensemblhg38GRCh38
GRCh371949,164,664 - 49,176,274 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361953,856,476 - 53,868,076 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1946,029,521 - 46,042,362 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1945,544,064 - 45,555,139 (-)NCBIHuRef
CHM1_11949,166,555 - 49,177,886 (-)NCBICHM1_1
T2T-CHM13v2.01951,655,875 - 51,667,423 (-)NCBIT2T-CHM13v2.0
Ntn5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39745,333,519 - 45,343,980 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl745,333,446 - 45,343,980 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38745,684,022 - 45,694,556 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,684,022 - 45,694,556 (+)Ensemblmm10GRCm38
MGSCv37752,939,784 - 52,949,924 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36745,552,456 - 45,562,596 (+)NCBIMGSCv36mm8
Celera741,146,895 - 41,157,130 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.43NCBI
Ntn5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81105,293,408 - 105,302,163 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1105,293,434 - 105,302,163 (+)EnsemblGRCr8
mRatBN7.2196,156,948 - 96,165,997 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl196,156,985 - 96,165,630 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1101,542,413 - 101,550,924 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01110,015,111 - 110,023,622 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01103,305,490 - 103,314,001 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1103,930,091 - 103,938,850 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1109,040,220 - 109,048,979 (+)NCBILyon_Normotensive
Lyon_Hypertensive1105,573,512 - 105,582,267 (+)NCBILyon_Hypertensive
F344_StmMcwi1104,030,188 - 104,038,943 (+)NCBIF344_StmMcwi
Rnor_6.01101,668,354 - 101,678,117 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,669,086 - 101,677,596 (+)Ensemblrn6Rnor6.0
Rnor_5.01102,746,540 - 102,756,952 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4196,154,919 - 96,163,239 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera190,410,184 - 90,418,695 (+)NCBICelera
Cytogenetic Map1q22NCBI
Ntn5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555591,892,982 - 1,901,759 (+)NCBIChiLan1.0ChiLan1.0
NTN5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22054,766,415 - 54,777,583 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11956,692,752 - 56,703,813 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01945,662,734 - 45,678,300 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11954,255,122 - 54,258,753 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1954,255,392 - 54,263,552 (-)EnsemblpanPan2panpan1.1
NTN5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,651,495 - 107,653,904 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,647,674 - 107,655,020 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1107,169,268 - 107,176,769 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01108,175,428 - 108,178,402 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11107,838,241 - 107,845,744 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01107,485,538 - 107,493,041 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,324,848 - 108,327,822 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ntn5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,077,178 - 21,089,986 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366642,697,616 - 2,703,532 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366642,697,359 - 2,706,962 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTN5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1641,910,275 - 41,917,958 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607321,781,347 - 21,791,504 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ntn5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248325,219,259 - 5,225,653 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248325,217,001 - 5,225,930 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ntn5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12153,826,171 - 153,833,152 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in NTN5
71 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 19 1 5 14 12 19 3 3 1

Sequence


Ensembl Acc Id: ENSSSCT00000003491   ⟹   ENSSSCP00000003408
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl654,006,665 - 54,017,166 (-)Ensembl
RefSeq Acc Id: XM_021094674   ⟹   XP_020950333
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,006,662 - 54,015,750 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094675   ⟹   XP_020950334
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,006,662 - 54,019,282 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094677   ⟹   XP_020950336
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,006,662 - 54,015,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094678   ⟹   XP_020950337
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,006,662 - 54,015,750 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094679   ⟹   XP_020950338
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,006,662 - 54,015,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094680   ⟹   XP_020950339
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,006,662 - 54,015,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094681   ⟹   XP_020950340
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,006,662 - 54,015,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094682   ⟹   XP_020950341
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,006,662 - 54,015,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021094683   ⟹   XP_020950342
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1654,006,662 - 54,015,754 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020950334   ⟸   XM_021094675
- Peptide Label: isoform X2
- UniProtKB: A0A8D1WQF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950342   ⟸   XM_021094683
- Peptide Label: isoform X9
- UniProtKB: A0A8D0XA83 (UniProtKB/TrEMBL),   F1RIQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950340   ⟸   XM_021094681
- Peptide Label: isoform X7
- UniProtKB: A0A8D1WQF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950338   ⟸   XM_021094679
- Peptide Label: isoform X5
- UniProtKB: A0A8D1WQF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950336   ⟸   XM_021094677
- Peptide Label: isoform X3
- UniProtKB: A0A8D1WQF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950341   ⟸   XM_021094682
- Peptide Label: isoform X8
- UniProtKB: A0A8D0XA83 (UniProtKB/TrEMBL),   F1RIQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950339   ⟸   XM_021094680
- Peptide Label: isoform X6
- UniProtKB: A0A8D1WSM6 (UniProtKB/TrEMBL),   A0A8D0XA83 (UniProtKB/TrEMBL),   F1RIQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950337   ⟸   XM_021094678
- Peptide Label: isoform X4
- UniProtKB: A0A8D1WQF4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020950333   ⟸   XM_021094674
- Peptide Label: isoform X1
- UniProtKB: A0A8D1WQF4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000003408   ⟸   ENSSSCT00000003491
Protein Domains
Laminin EGF-like   NTR


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000003146 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00030052328 UniProtKB/TrEMBL
  ENSSSCG00050075625 UniProtKB/TrEMBL
  ENSSSCG00060072803 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000003491 ENTREZGENE
  ENSSSCT00000003491.5 UniProtKB/TrEMBL
  ENSSSCT00030072907.1 UniProtKB/TrEMBL
  ENSSSCT00050103751.1 UniProtKB/TrEMBL
  ENSSSCT00060099533.1 UniProtKB/TrEMBL
  ENSSSCT00060099590.1 UniProtKB/TrEMBL
  ENSSSCT00060099644.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.120 UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
  Tie2 ligand-binding domain superfamily UniProtKB/TrEMBL
InterPro Laminin/Netrin_ECM UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  LMN_ATRN_NET-like_EGF UniProtKB/TrEMBL
  Netrin_domain UniProtKB/TrEMBL
  Netrin_module_non-TIMP UniProtKB/TrEMBL
  TIMP-like_OB-fold UniProtKB/TrEMBL
NCBI Gene NTN5 ENTREZGENE
PANTHER NETRIN-5 UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/TrEMBL
Pfam EGF_LMN_ATRN UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
  NTR UniProtKB/TrEMBL
PROSITE EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
  NTR UniProtKB/TrEMBL
SMART C345C UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF50242 UniProtKB/TrEMBL
UniProt A0A8D0XA83 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WQF4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WSM6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WTN6_PIG UniProtKB/TrEMBL
  F1RIQ1 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:90934 ENTREZGENE