Advanced Search (OLGA)

Gene: PARVA (parvin alpha) Sus scrofa

Analyze

Symbol:

PARVA

Name:

parvin alpha

RGD ID:

14243802

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin-mediated cell contraction (ortholog); cell adhesion (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN cytoplasm (ortholog); lamellipodium (ortholog); nucleus (ortholog); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

alpha-parvin

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PARVA (parvin alpha)	HGNC	Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Parva (parvin, alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Parva (parvin, alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Parva (parvin alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PARVA (parvin alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PARVA (parvin alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Parva (parvin alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PARVA (parvin alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Parva (parvin alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Parva (parvin alpha)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	46,839,485 - 47,028,963 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	46,839,081 - 47,028,102 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	50,265,945 - 50,333,565 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

substance-related disorder (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IBA,IEA,ISO)

actin filament bundle assembly (IEA)

actin filament network formation (IEA)

actin-mediated cell contraction (ISO)

cell adhesion (IEA,ISO)

cilium assembly (IBA,IEA)

establishment or maintenance of cell polarity (ISO)

establishment or maintenance of cell polarity regulating cell shape (IBA)

heterotypic cell-cell adhesion (ISO)

outflow tract septum morphogenesis (ISO)

smooth muscle cell chemotaxis (ISO)

sprouting angiogenesis (ISO)

substrate adhesion-dependent cell spreading (IBA,IEA)

Cellular Component

actin cytoskeleton (IBA,IEA)

cytoplasm (IBA,ISO)

cytoskeleton (IEA)

cytosol (IEA)

focal adhesion (IBA,IEA)

lamellipodium (ISO)

nucleus (ISO)

protein-containing complex (ISO)

Z disc (IEA)

Molecular Function

actin binding (IBA,IEA)

protein binding (ISO)

protein kinase inhibitor activity (IEA)

protein-containing complex binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

integrin mediated signaling pathway (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PARVA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	46,839,485 - 47,028,963 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	46,839,081 - 47,028,102 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	50,265,945 - 50,333,565 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PARVA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	12,376,436 - 12,535,356 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	12,377,482 - 12,535,356 (+)	Ensembl			hg38	GRCh38
GRCh37	11	12,399,118 - 12,556,903 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	12,355,722 - 12,507,986 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	12,355,678 - 12,508,919	NCBI
Celera	11	12,524,458 - 12,676,606 (+)	NCBI		Celera
Cytogenetic Map	11	p15.3	NCBI
HuRef	11	12,075,562 - 12,234,995 (+)	NCBI		HuRef
CHM1_1	11	12,397,901 - 12,555,768 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	12,468,314 - 12,627,400 (+)	NCBI		T2T-CHM13v2.0

Parva
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	112,027,102 - 112,190,899 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	112,026,712 - 112,190,899 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	112,427,706 - 112,591,688 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	112,427,505 - 112,591,692 (+)	Ensembl			mm10	GRCm38
MGSCv37	7	119,571,220 - 119,735,202 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	112,218,887 - 112,382,869 (+)	NCBI		MGSCv36	mm8
Celera	7	112,405,042 - 112,563,819 (+)	NCBI		Celera
Cytogenetic Map	7	F1	NCBI
cM Map	7	58.76	NCBI

Parva
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	175,981,725 - 176,139,523 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	175,981,432 - 176,139,526 (+)	Ensembl				GRCr8
mRatBN7.2	1	166,547,142 - 166,704,958 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	166,547,132 - 166,704,950 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	174,881,953 - 175,040,801 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	182,067,965 - 182,226,830 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	174,767,911 - 174,922,672 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	1	175,235,237 - 175,397,168 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	1	180,279,082 - 180,441,013 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	1	176,946,358 - 177,108,296 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	1	175,172,887 - 175,334,784 (+)	NCBI		F344_StmMcwi
Rnor_6.0	1	177,249,302 - 177,408,160 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	177,249,226 - 177,408,205 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	184,227,712 - 184,383,031 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	170,232,441 - 170,387,843 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	164,422,597 - 164,576,541 (+)	NCBI		Celera
RGSC_v3.1	1	170,352,374 - 170,507,777 (+)	NCBI
Cytogenetic Map	1	q33	NCBI

Parva
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	27,813,745 - 27,960,743 (+)	Ensembl
ChiLan1.0	NW_004955414	27,813,745 - 27,960,743 (+)	NCBI	ChiLan1.0	ChiLan1.0

PARVA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	14,820,723 - 14,975,758 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	14,785,176 - 14,943,318 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	12,544,232 - 12,701,517 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	12,237,446 - 12,394,986 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	12,237,446 - 12,387,584 (+)	Ensembl			panPan2	panpan1.1

PARVA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	35,382,447 - 35,536,791 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	35,382,462 - 35,536,776 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	34,919,902 - 35,050,892 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	36,260,512 - 36,428,746 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	36,261,661 - 36,428,744 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	35,521,317 - 35,688,912 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	35,697,872 - 35,865,269 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	35,985,531 - 36,152,922 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Parva
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	49,943,929 - 50,096,357 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936528	5,977,913 - 6,130,956 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936528	5,977,909 - 6,130,814 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PARVA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	52,310,145 - 52,470,617 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	52,310,494 - 52,470,369 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	149,905,919 - 150,072,173 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Parva
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	4,391,010 - 4,544,842 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624766	4,390,952 - 4,544,550 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Parva
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	88,905,633 - 89,061,047 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in PARVA
5628 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021083311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK235857	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK352253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01042027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000028332 ⟹ ENSSSCP00000020585

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	46,839,870 - 47,028,078 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000056665 ⟹ ENSSSCP00000052300

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	46,839,485 - 47,028,963 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000072163 ⟹ ENSSSCP00000059829

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	46,839,764 - 46,932,501 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000080233 ⟹ ENSSSCP00000064956

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	46,839,485 - 47,028,963 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000087765 ⟹ ENSSSCP00000071479

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	46,839,485 - 47,028,963 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000092396 ⟹ ENSSSCP00000080052

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	2	46,839,485 - 46,910,412 (-)	Ensembl

RefSeq Acc Id:

XM_021083311 ⟹ XP_020938970

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	2	46,839,081 - 47,028,102 (-)	NCBI

Sequence:

show sequence

TGCAGGGCGGAGGGCGGCGCGAGGGAGGGAGAGAGGGAAGGGAAAGGCGAGCGTGAGCTGCCTC
AAATGCTTGGAATAATTCCGCTTCCGTTTGGAAAGCCGCAGCCTCAGTCCCGCCGCGTCCGCCC
AAGCGCCAGCTCCGCGTCCCGACCGGCCCGCGGCTGTCCGCTCCGCGCCATGGCCACCTCCCCG
CAGAAGTCGCCGTCTGTCCCCAAGTCCCCCACTCCCAAATCGCCCCCATCCCGGAAGAAAGACG
ACTCCTTCTTGGGGAAACTCGGAGGGACTCTAGCCCGGAGAAAGAAAGCAAAGGAGGTGTCAGA
GCTTCAGGAGGAGGGCATGAACGCCATCAACCTGCCCCTCAGCCCCATCCCCTTCGAGCTGGAC
CCTGAGGACACGATGCTGGAGGAGAATGAAGTGCGAACCATGGTGGACCCCAACTCACGCAGCG
ACCCCAAACTCCAAGAACTGATGAAGGTATTAATTGACTGGATTAACGATGTTTTGGTTGGAGA
AAGAATTATCGTGAAAGACCTGGCTGAAGATTTATATGACGGCCAAGTCCTGCAGAAGCTTTTT
GAGAAACTTGAGAGTGAGAAGCTGAATGTTGCTGAGGTCACCCAGTCAGAGATTGCCCAGAAGC
AAAAGCTGCAGACTGTCCTGGAGAAGATCAACGAAACCCTGAAACTTCCTCCCAGGAGCATCAA
GTGGAATGTAGACTCTGTTCATGCCAAGAGCCTGGTAGCCATCTTGCATCTGCTGGTTGCTCTG
TCCCAGTATTTCCGGGCTCCAATCCGACTCCCAGACCATGTTTCCATCCAAGTGGTTGTGGTTC
AGAAACGAGAAGGAATCCTCCAGTCTCGGCAAATCCAAGAGGAAATAACTGGTAACACAGAGGC
TCTTTCCGGAAGGCACGAACGAGATGCATTTGACACCTTGTTCGACCACGCACCGGACAAGCTC
AACGTGGTGAAAAAGACACTCATCACCTTCGTGAATAAGCACCTGAATAAACTGAACCTGGAAG
TCACAGAACTGGAAACCCAGTTTGCAGATGGGGTGTACCTGGTGCTGCTCATGGGGCTCCTGGA
GGGCTACTTCGTGCCCCTGCACAGCTTCTTCCTGACCCCGGACAGCTTTGAACAGAAGGTGCTG
AATGTCTCCTTTGCCTTTGAGCTCATGCAAGACGGAGGATTGGAAAAGCCAAAACCACGGCCAG
AAGACATCGTCAACTGTGACCTGAAGTCCACACTGCGAGTCCTGTACAACCTCTTCACCAAGTA
CCGGAACGTGGAGTGAGGAGCAGACTGGACCATCCCGAGCCACCTTAACCTGCCTATGCCCGTC
TCCTGCTCTGTGCCCTCCCCCAAGTCTGGCTGCCACCCAGAGATAGTGGGACCTGAAATTAGGA
AGGAACTGATCCGTAACTCTGTGGGCTGACCCACACCACTCAGGCTCTGAGGACCGACGCAGCG
ATGGCTTGCGAAGGTTGTCCCCTTGCTGGTGCCACGCTTAGATTTGCCTCAGCCCCCAGCTTAG
GCACAAGTGCCTGCCCCTCCCCACCCCCAGAAGATGGAAATAAAGATAATAGGTCCCATTGAAG
AGGTGTAACCTTTGGGCTGGGCATCACGCTAAGTGCCCTGACCTACTCAAACTCATGAATACTC
ATGACTCCCACTGACGCAGATGCTGGCAGCCCCTTTTACATATAAGGAAACTGAGGCTCAGAGA
GGTTCTGCGGCTTGCCAGACACTGCCATTTGTTTTCCTTCTCTGAAGAACCTATGTGTTCATAG
CCAGCCCATTACATTGCCTTCTCGGCAATCCCCATGAGACACGTGTCCTCCAAGAAGATGAGAC
CCCCCCCAACCCCATCCCATCCCAAGCTCACTACCGGGCAGGCTAGGTCAGGGCTTAGTGATTC
ACACTGAAATTGGCAAATCAAATTTAACCCAATTAATAGTGTGTGTGTGGCAGGAGTCATGTCC
CTCCACTCCTTTGTACAAATGAAAATTACTCTTAATTCCTTCAGATTTGTAATAGCCCCTTACT
CTGGTTTCAGGGTGACATTTGGGAAGGATTCTGTTTAAAATTAATGGAGTGGCACATTTTGCAG
CCTTTTTGCTTGATTGCATGTAATGGATGTGCCCTATATTTTCCTGCAAAGTAAGTCCTCGATT
CATTATCATTAGGCAAATGTACAATATACCCAGGCACCGCAGAGCGCTGGGCGCCGGCCCATGT
GAGCAGGGCTTGGGAAGTAGGGCTCTTCACCAGGACCCTTGAGCTTTAAAGAAAGGAACTCCTT
TTCACCCTCTAATTGATCATTTAGACCATTTCTGGCTAAGTCTGCCCACATGCAATTACTGGCT
AATTCAGGCGAGGAAAAATGTAAGTTATTTAGGCCCAAGCGGAGTGGTTTCCTTGCGGGCTTGT
GGTTACATGGATCCCCTCTACATGAACCCAAGTTCCGAATACAGAGCTCTCGTTGGCCCAGCCT
GCGGGTCCTGGAGGGATAGGAAAGGGCTAGAATGGGGGTGACTAAGCGGACAAGAAGCTTGGGA
CAAATGCTTGCACACTTAGCATACAGAGGATTACTCTCAGACCGAGGGATGGGCCTGTGGCTAT
TCACACTTAGACTGCTAAGTTGACCGAGGCTTTGGGAGGACTAATAACTTAGAGTGATATTGTA
TCTGCAATACAGAATTTTCCTAAGTATGGCAGGCGGACACCAGCCTGGGTCCCTGCCTCGCAAA
GTCTGTGCCTGCTTTGTCACTACTTGAGGCCAGATGGCACGAAGCCCATCTCTGGTTTGAGGAA
GTCCTTGTGATCTCTGTCTATGCTACCCGGAGGGAGGCCTCCCATTGTCTCTAAAACATTCCTT
CTAGCTTCTCCTCACTTCTTACTCTATGGTCTACCTGCAGGAACTTAGAAGCCACACCGTTTAG
AGAGACTTCCTATGTCTGAGGAGGTTTTGCTCCAAGAGAGAATTATTCAGCATCATGAGCATTT
AAGATATAAAGAAAATGTACTCTCTTGTGTCAGTTTAAAAGAATACAATTCTTTTTTACCTAAT
TAGTGAAATATTTCATTTGTCTTTAGGAAACACTAAATACTGTGATACTTCTGTTGGCTCTCTT
TGAAATTCCTGATAGCAAACTGACATAAATAATTGCTTTGTCTTCTTGAGCAAATACTAAAGTG
AGATGAAATACGAGGAATGCATTCATTTAAACATGCTTTGCTGTATGAACTTTGTCTCCTTTGT
GTGTGTATGTGTGTGTGCCTTATATTCAAGCTGCAAATGGACAGTGGGCAAATGGCCTTATTAA
AAATACTCCTTTTTTGTATTTTACGTATATGCTGTATAAAAACACATCAGAACACTTGGAAAGG
TTTTTTTTTTTTTTTTAAGAACAGGTCTAATTTATCAGAAAATTGTTTTTTTGATACCATCTTG
CCTTAGTCTAGAACCCCAGGGCCTAGGCCTGGTTTTATAGCCCTATCACCTCACTTAGAGGTTT
TCCTTTAGATGCTGGAAGCTCTTGCTTAATATATGACTTTGTTTTTGAAGCAGGGTAAAAGGCA
TCAGAAAATAAACCAAACTTAACCCCTCATCTCTTTTAAAGGAAAAAAAAAAAAAAAAAACTAA
GGCAAAAATCAAGTCTCCATCAGCTCACAGGGTCCTTTTTTTCCTCTTTTTTAAATTTAAGTGC
ATTATTTTTAATAATTAATGTATAAATGGTGCAAACTTCAAATGCATGAATGGGCATCTAGTAA
AAAACCTAATCTCCCTTCCTCCCCTCCCCCAGCAGCCAATACCTGTCCCCAGAGGCAACTATTT
TGTTCTTTTTCTTATATTCACTTCCAGAGGTACCCCAGCAATATCAAGCATCAACACGCATATA
AAATTACTTTTTAAATATAAATAGCAAATTGTACATGCTATCATGCACACTGCTTTCTTCACTT
GTTGTTCTGTCTTGGAAATTATTTTTCACTGGCATTAAAACTTCTTACACTTTAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020938970	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000020585.3
	ENSSSCP00000052300
	ENSSSCP00000052300.1
	ENSSSCP00000059829.1
	ENSSSCP00000064956.1
	ENSSSCP00000071479.2
	ENSSSCP00000080052.1
	ENSSSCP00015023669.1
	ENSSSCP00025019171.1
	ENSSSCP00030012661.1
	ENSSSCP00035010254.1
	ENSSSCP00040035909.1
	ENSSSCP00045026003.1
	ENSSSCP00050009036.1
	ENSSSCP00055040726.1
	ENSSSCP00065014349.1
	ENSSSCP00070017765.1

RefSeq Acc Id:

XP_020938970 ⟸ XM_021083311

- UniProtKB:

A0A4X1TNL1 (UniProtKB/TrEMBL), A0A5G2QJH9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLGIIPLPFGKPQPQSRRVRPSASSASRPARGCPLRAMATSPQKSPSVPKSPTPKSPPSRKKDD
SFLGKLGGTLARRKKAKEVSELQEEGMNAINLPLSPIPFELDPEDTMLEENEVRTMVDPNSRSD
PKLQELMKVLIDWINDVLVGERIIVKDLAEDLYDGQVLQKLFEKLESEKLNVAEVTQSEIAQKQ
KLQTVLEKINETLKLPPRSIKWNVDSVHAKSLVAILHLLVALSQYFRAPIRLPDHVSIQVVVVQ
KREGILQSRQIQEEITGNTEALSGRHERDAFDTLFDHAPDKLNVVKKTLITFVNKHLNKLNLEV
TELETQFADGVYLVLLMGLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPE
DIVNCDLKSTLRVLYNLFTKYRNVE

hide sequence

Ensembl Acc Id:

ENSSSCP00000064956 ⟸ ENSSSCT00000080233

Ensembl Acc Id:

ENSSSCP00000052300 ⟸ ENSSSCT00000056665

Ensembl Acc Id:

ENSSSCP00000020585 ⟸ ENSSSCT00000028332

Ensembl Acc Id:

ENSSSCP00000071479 ⟸ ENSSSCT00000087765

Ensembl Acc Id:

ENSSSCP00000059829 ⟸ ENSSSCT00000072163

Ensembl Acc Id:

ENSSSCP00000080052 ⟸ ENSSSCT00000092396

Protein Domains

Calponin-homology (CH)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000028827	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015044148	UniProtKB/TrEMBL
	ENSSSCG00025033064	UniProtKB/TrEMBL
	ENSSSCG00030020472	UniProtKB/TrEMBL
	ENSSSCG00035020658	UniProtKB/TrEMBL
	ENSSSCG00040060583	UniProtKB/TrEMBL
	ENSSSCG00045021902	UniProtKB/TrEMBL
	ENSSSCG00050015882	UniProtKB/TrEMBL
	ENSSSCG00055025712	UniProtKB/TrEMBL
	ENSSSCG00065025764	UniProtKB/TrEMBL
	ENSSSCG00070011029	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000028332.3	UniProtKB/TrEMBL
	ENSSSCT00000056665	ENTREZGENE
	ENSSSCT00000056665.2	UniProtKB/TrEMBL
	ENSSSCT00000072163.1	UniProtKB/TrEMBL
	ENSSSCT00000080233.1	UniProtKB/TrEMBL
	ENSSSCT00000087765.2	UniProtKB/TrEMBL
	ENSSSCT00000092396.1	UniProtKB/TrEMBL
	ENSSSCT00015058924.1	UniProtKB/TrEMBL
	ENSSSCT00025044999.1	UniProtKB/TrEMBL
	ENSSSCT00030028327.1	UniProtKB/TrEMBL
	ENSSSCT00035026869.1	UniProtKB/TrEMBL
	ENSSSCT00040082464.1	UniProtKB/TrEMBL
	ENSSSCT00045037408.1	UniProtKB/TrEMBL
	ENSSSCT00050021574.1	UniProtKB/TrEMBL
	ENSSSCT00055050941.1	UniProtKB/TrEMBL
	ENSSSCT00065034541.1	UniProtKB/TrEMBL
	ENSSSCT00070021477.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.418.10	UniProtKB/TrEMBL
InterPro	CH-domain	UniProtKB/TrEMBL
	CH_dom_sf	UniProtKB/TrEMBL
	Parvin	UniProtKB/TrEMBL
NCBI Gene	PARVA	ENTREZGENE
PANTHER	ALPHA-PARVIN	UniProtKB/TrEMBL
	PTHR12114	UniProtKB/TrEMBL
Pfam	PF00307	UniProtKB/TrEMBL
PIRSF	Parvin	UniProtKB/TrEMBL
PROSITE	PS50021	UniProtKB/TrEMBL
SMART	SM00033	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47576	UniProtKB/TrEMBL
UniProt	A0A287B7K9_PIG	UniProtKB/TrEMBL
	A0A4X1TNL1	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2QCR7_PIG	UniProtKB/TrEMBL
	A0A5G2QJH9	ENTREZGENE, UniProtKB/TrEMBL
	A0A5G2R583_PIG	UniProtKB/TrEMBL
	A0A8W4FLG7_PIG	UniProtKB/TrEMBL
	I3L973_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:91185	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - CTD

RGD Manual Annotations