ERCC6L2 (ERCC excision repair 6 like 2) - Rat Genome Database

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Pathways
Gene: ERCC6L2 (ERCC excision repair 6 like 2) Sus scrofa
Analyze
Symbol: ERCC6L2
Name: ERCC excision repair 6 like 2
RGD ID: 14238836
Description: ENCODES a protein that exhibits ATP binding (inferred); DNA binding (inferred); helicase activity (inferred); INVOLVED IN cellular response to reactive oxygen species (inferred); DNA damage response (inferred); DNA repair (inferred); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); bone marrow disease (ortholog); Bone Marrow Failure Syndrome 2 (ortholog); FOUND IN centrosome (inferred); chromosome, centromeric region (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DNA excision repair protein ERCC-6-like 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1026,112,028 - 26,241,148 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11026,112,019 - 26,264,759 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21030,329,098 - 30,457,306 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ERCC6L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1026,112,028 - 26,241,148 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11026,112,019 - 26,264,759 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21030,329,098 - 30,457,306 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ERCC6L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38995,875,691 - 96,041,092 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl995,871,264 - 96,121,154 (+)Ensemblhg38GRCh38
GRCh37998,637,973 - 98,803,374 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36997,677,721 - 97,770,943 (+)NCBIBuild 36Build 36hg18NCBI36
Celera969,079,501 - 69,172,730 (+)NCBICelera
Cytogenetic Map9q22.32NCBI
HuRef968,248,993 - 68,342,217 (+)NCBIHuRef
CHM1_1998,784,502 - 98,877,688 (+)NCBICHM1_1
T2T-CHM13v2.09108,047,061 - 108,212,474 (+)NCBIT2T-CHM13v2.0
Ercc6l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391363,958,793 - 64,048,116 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1363,963,054 - 64,048,116 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381363,810,979 - 63,900,302 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1363,815,240 - 63,900,302 (+)Ensemblmm10GRCm38
MGSCv371363,916,628 - 64,001,610 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361363,973,763 - 64,001,610 (+)NCBIMGSCv36mm8
Celera1365,468,731 - 65,557,796 (+)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1333.1NCBI
Ercc6l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8171,055,881 - 1,323,207 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl171,222,139 - 1,316,056 (-)EnsemblGRCr8
mRatBN7.2171,076,486 - 1,311,281 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl171,216,428 - 1,310,275 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx171,235,073 - 1,329,002 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0172,777,667 - 2,871,599 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0171,232,526 - 1,326,456 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd171,231,484 - 1,325,413 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive171,215,060 - 1,308,988 (-)NCBILyon_Normotensive
Lyon_Hypertensive171,215,068 - 1,308,997 (-)NCBILyon_Hypertensive
F344_StmMcwi171,598,920 - 1,692,848 (-)NCBIF344_StmMcwi
Rnor_6.0171,325,654 - 1,421,732 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl171,305,016 - 1,421,685 (+)Ensemblrn6Rnor6.0
Rnor_5.0171,318,508 - 1,414,155 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4176,747,582 - 6,845,232 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera171,207,807 - 1,301,350 (+)NCBICelera
Cytogenetic Map17p14NCBI
Ercc6l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542222,753,233 - 22,879,820 (+)Ensembl
ChiLan1.0NW_00495542222,753,008 - 22,890,339 (+)NCBIChiLan1.0ChiLan1.0
ERCC6L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21143,393,714 - 43,580,141 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1943,396,087 - 43,582,958 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0966,967,399 - 67,153,934 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1995,091,344 - 95,230,680 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl995,092,512 - 95,183,122 (+)EnsemblpanPan2panpan1.1
ERCC6L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1170,793,975 - 70,918,151 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl170,835,410 - 70,917,962 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha171,556,932 - 71,681,271 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0171,094,863 - 71,216,795 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl170,970,562 - 71,251,480 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1170,905,183 - 71,035,451 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0170,669,817 - 70,792,128 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0171,380,405 - 71,505,183 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ercc6l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049445,816,651 - 5,847,038 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648733,082 - 60,819 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERCC6L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112107,095,221 - 107,224,532 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12107,095,952 - 107,224,197 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603895,450,134 - 95,624,155 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ercc6l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475317,393,629 - 17,547,793 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ercc6l2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11475,649,339 - 75,743,684 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in ERCC6L2
4339 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000042428   ⟹   ENSSSCP00000036733
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1026,112,028 - 26,241,138 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000049680   ⟹   ENSSSCP00000058725
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1026,112,032 - 26,241,148 (-)Ensembl
RefSeq Acc Id: XM_003357697   ⟹   XP_003357745
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11026,112,019 - 26,242,083 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064594   ⟹   XP_020920253
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11026,112,024 - 26,264,248 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064595   ⟹   XP_020920254
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11026,112,024 - 26,264,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021064596   ⟹   XP_020920255
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11026,112,024 - 26,241,148 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003357745   ⟸   XM_003357697
- Peptide Label: isoform X1
- UniProtKB: A0A287AZP6 (UniProtKB/TrEMBL),   A0A8D0R1W5 (UniProtKB/TrEMBL),   A0A8D1BR40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920254   ⟸   XM_021064595
- Peptide Label: isoform X2
- UniProtKB: A0A8D0R1Q3 (UniProtKB/TrEMBL),   A0A8D1BL39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920253   ⟸   XM_021064594
- Peptide Label: isoform X2
- UniProtKB: A0A8D0R1Q3 (UniProtKB/TrEMBL),   A0A8D1BL39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020920255   ⟸   XM_021064596
- Peptide Label: isoform X3
- UniProtKB: A0A286ZYZ1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000058725   ⟸   ENSSSCT00000049680
Ensembl Acc Id: ENSSSCP00000036733   ⟸   ENSSSCT00000042428

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010941 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025017071 UniProtKB/TrEMBL
  ENSSSCG00035080524 UniProtKB/TrEMBL
  ENSSSCG00045013799 UniProtKB/TrEMBL
  ENSSSCG00055001115 UniProtKB/TrEMBL
  ENSSSCG00060003232 UniProtKB/TrEMBL
  ENSSSCG00065012833 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042428.3 UniProtKB/TrEMBL
  ENSSSCT00000049680 ENTREZGENE
  ENSSSCT00000049680.2 UniProtKB/TrEMBL
  ENSSSCT00025023026.1 UniProtKB/TrEMBL
  ENSSSCT00025023089.1 UniProtKB/TrEMBL
  ENSSSCT00025023164.1 UniProtKB/TrEMBL
  ENSSSCT00025023236.1 UniProtKB/TrEMBL
  ENSSSCT00035110367.1 UniProtKB/TrEMBL
  ENSSSCT00035110384.1 UniProtKB/TrEMBL
  ENSSSCT00045023560.1 UniProtKB/TrEMBL
  ENSSSCT00045023618.1 UniProtKB/TrEMBL
  ENSSSCT00045023692.1 UniProtKB/TrEMBL
  ENSSSCT00045023759.1 UniProtKB/TrEMBL
  ENSSSCT00055001988.1 UniProtKB/TrEMBL
  ENSSSCT00055002054.1 UniProtKB/TrEMBL
  ENSSSCT00055002119.1 UniProtKB/TrEMBL
  ENSSSCT00060004003.1 UniProtKB/TrEMBL
  ENSSSCT00060004006.1 UniProtKB/TrEMBL
  ENSSSCT00060004010.1 UniProtKB/TrEMBL
  ENSSSCT00065017092.1 UniProtKB/TrEMBL
  ENSSSCT00065017106.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.10810 UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/TrEMBL
InterPro DNA/RNA_helicase_DEAH_CS UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  Heliccase-ass-bd UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SNF2-like_sf UniProtKB/TrEMBL
  SNF2/RAD54-like_C UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
  SNF2_RAD54_helicase_repair UniProtKB/TrEMBL
NCBI Gene ERCC6L2 ENTREZGENE
PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED UniProtKB/TrEMBL
  SNF2/RAD54 FAMILY MEMBER UniProtKB/TrEMBL
Pfam Helicase_C UniProtKB/TrEMBL
  RHH_ERCC6L2 UniProtKB/TrEMBL
  SNF2_N UniProtKB/TrEMBL
  VIGSSK UniProtKB/TrEMBL
PROSITE DEAH_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A286ZYZ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AZP6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0R1Q3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0R1W5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0R295_PIG UniProtKB/TrEMBL
  A0A8D1BL39 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1BR40 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1PCM6_PIG UniProtKB/TrEMBL
  A0A8D1SHG2_PIG UniProtKB/TrEMBL
  A0A8D1SMM3_PIG UniProtKB/TrEMBL
  A0A8D1SNV3_PIG UniProtKB/TrEMBL
  A0A8D1XM43_PIG UniProtKB/TrEMBL
VGNC ID VGNC:107140 ENTREZGENE