VPS16 (VPS16 core subunit of CORVET and HOPS complexes) - Rat Genome Database

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Pathways
Gene: VPS16 (VPS16 core subunit of CORVET and HOPS complexes) Sus scrofa
Analyze
Symbol: VPS16
Name: VPS16 core subunit of CORVET and HOPS complexes
RGD ID: 14156933
Description: ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN symbiont entry into host cell (ortholog); ASSOCIATED WITH dystonia 30 (ortholog); genetic disease (ortholog); neuropathy (ortholog); FOUND IN actin filament (ortholog); AP-3 adaptor complex (ortholog); axon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: vacuolar protein sorting-associated protein 16 homolog; VPS16, CORVET/HOPS core subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1732,803,412 - 32,825,933 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11732,803,596 - 32,825,974 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21737,174,405 - 37,196,780 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
VPS16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1732,803,412 - 32,825,933 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11732,803,596 - 32,825,974 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21737,174,405 - 37,196,780 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VPS16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38202,840,745 - 2,866,732 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl202,840,689 - 2,866,800 (+)Ensemblhg38GRCh38
GRCh37202,821,391 - 2,847,378 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36202,769,373 - 2,795,380 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34202,792,592 - 2,795,380NCBI
Celera202,882,628 - 2,909,733 (+)NCBICelera
Cytogenetic Map20p13NCBI
HuRef202,769,563 - 2,796,285 (+)NCBIHuRef
CHM1_1202,821,383 - 2,847,380 (+)NCBICHM1_1
T2T-CHM13v2.0202,871,419 - 2,897,578 (+)NCBIT2T-CHM13v2.0
Vps16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392130,265,744 - 130,286,189 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2130,266,259 - 130,286,189 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382130,424,320 - 130,444,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2130,424,339 - 130,444,269 (+)Ensemblmm10GRCm38
MGSCv372130,250,056 - 130,270,005 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362130,115,830 - 130,135,175 (+)NCBIMGSCv36mm8
Celera2131,648,775 - 131,668,719 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map263.22NCBI
Vps16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83138,075,649 - 138,097,154 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3138,075,660 - 138,110,632 (+)EnsemblGRCr8
mRatBN7.23117,622,534 - 117,644,041 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3117,622,542 - 117,646,441 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3121,519,900 - 121,541,340 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03130,115,373 - 130,136,866 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03127,776,026 - 127,797,466 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03122,947,887 - 122,969,543 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3122,947,913 - 122,969,541 (+)Ensemblrn6Rnor6.0
Rnor_5.03129,448,219 - 129,469,258 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43118,037,765 - 118,058,841 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3116,436,997 - 116,458,059 (+)NCBICelera
RGSC_v3.13117,943,337 - 117,964,412 (+)NCBI
Cytogenetic Map3q36NCBI
Vps16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541513,791,611 - 13,813,500 (+)Ensembl
ChiLan1.0NW_00495541513,791,611 - 13,813,500 (+)NCBIChiLan1.0ChiLan1.0
VPS16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2213,812,589 - 3,837,504 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1203,809,414 - 3,834,329 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0202,931,553 - 2,956,604 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1202,695,335 - 2,720,032 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl202,695,335 - 2,720,030 (+)EnsemblpanPan2panpan1.1
VPS16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12418,401,440 - 18,424,605 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2418,399,572 - 18,424,510 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2418,230,648 - 18,253,873 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02418,822,276 - 18,845,277 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2418,820,406 - 18,845,244 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12418,415,491 - 18,438,476 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02418,526,233 - 18,549,247 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02418,854,786 - 18,877,793 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Vps16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640167,446,685 - 167,469,186 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648515,879,327 - 15,900,544 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648515,879,324 - 15,900,544 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1233,527,526 - 33,554,742 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl233,527,554 - 33,557,145 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607110,955,876 - 10,988,194 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247413,959,363 - 3,991,191 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247413,959,561 - 3,991,191 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in VPS16
809 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000007840   ⟹   ENSSSCP00000007629
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1732,803,599 - 32,825,933 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000043153   ⟹   ENSSSCP00000053579
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1732,803,603 - 32,825,923 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000062960   ⟹   ENSSSCP00000040496
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1732,803,600 - 32,825,923 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000081840   ⟹   ENSSSCP00000068699
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1732,803,412 - 32,809,823 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000086479   ⟹   ENSSSCP00000074569
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1732,803,412 - 32,825,906 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000096638   ⟹   ENSSSCP00000079308
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1732,803,412 - 32,825,906 (-)Ensembl
RefSeq Acc Id: XM_003134328   ⟹   XP_003134376
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11732,803,596 - 32,825,974 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013985160   ⟹   XP_013840614
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11732,803,597 - 32,825,931 (-)NCBI
Sequence:
RefSeq Acc Id: XR_308704
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11732,803,597 - 32,825,974 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003134376 (Get FASTA)   NCBI Sequence Viewer  
  XP_013840614 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000007629
  ENSSSCP00000007629.5
  ENSSSCP00000040496.1
  ENSSSCP00000053579
  ENSSSCP00000053579.1
  ENSSSCP00000068699.2
  ENSSSCP00000074569.1
  ENSSSCP00000079308.1
  ENSSSCP00015031561.1
  ENSSSCP00015031669.1
  ENSSSCP00015031768.1
  ENSSSCP00015031876.1
  ENSSSCP00015031919.1
  ENSSSCP00015031959.1
  ENSSSCP00025022132.1
  ENSSSCP00025022192.1
  ENSSSCP00025022260.1
  ENSSSCP00025022331.1
  ENSSSCP00025022369.1
  ENSSSCP00025022405.1
  ENSSSCP00030021221.1
  ENSSSCP00035025055.1
  ENSSSCP00045001254.1
  ENSSSCP00045001293.1
  ENSSSCP00045001314.1
  ENSSSCP00045001343.1
  ENSSSCP00045001358.1
  ENSSSCP00045001375.1
  ENSSSCP00050032912.1
  ENSSSCP00050032915.1
  ENSSSCP00050032917.1
  ENSSSCP00050032919.1
  ENSSSCP00050032920.1
  ENSSSCP00050032921.1
  ENSSSCP00055018000.1
  ENSSSCP00055018081.1
  ENSSSCP00055018158.1
  ENSSSCP00055018249.1
  ENSSSCP00055018310.1
  ENSSSCP00055018373.1
  ENSSSCP00060003672.1
  ENSSSCP00060003674.1
  ENSSSCP00060003677.1
  ENSSSCP00060003682.1
  ENSSSCP00060003685.1
  ENSSSCP00060003689.1
  ENSSSCP00065040578.1
  ENSSSCP00065040586.1
  ENSSSCP00065040605.1
  ENSSSCP00065040650.1
  ENSSSCP00065040669.1
  ENSSSCP00070001419.1
  ENSSSCP00070001435.1
  ENSSSCP00070001466.1
  ENSSSCP00070001478.1
  ENSSSCP00070001482.1
RefSeq Acc Id: XP_003134376   ⟸   XM_003134328
- Peptide Label: isoform X1
- UniProtKB: A0A4X1SGW4 (UniProtKB/TrEMBL),   A0A480V3F0 (UniProtKB/TrEMBL),   A0A8D2CF28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013840614   ⟸   XM_013985160
- Peptide Label: isoform X2
- UniProtKB: A0A8D0U823 (UniProtKB/TrEMBL),   F1S8A3 (UniProtKB/TrEMBL),   A0A8D0WFV4 (UniProtKB/TrEMBL),   A0A8D0ZXE3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000074569   ⟸   ENSSSCT00000086479
Ensembl Acc Id: ENSSSCP00000007629   ⟸   ENSSSCT00000007840
Ensembl Acc Id: ENSSSCP00000068699   ⟸   ENSSSCT00000081840
Ensembl Acc Id: ENSSSCP00000040496   ⟸   ENSSSCT00000062960
Ensembl Acc Id: ENSSSCP00000053579   ⟸   ENSSSCT00000043153
Ensembl Acc Id: ENSSSCP00000079308   ⟸   ENSSSCT00000096638
Protein Domains
Vps16 C-terminal   Vps16 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007167 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015058608 UniProtKB/TrEMBL
  ENSSSCG00025038125 UniProtKB/TrEMBL
  ENSSSCG00030033994 UniProtKB/TrEMBL
  ENSSSCG00035046581 UniProtKB/TrEMBL
  ENSSSCG00045001249 UniProtKB/TrEMBL
  ENSSSCG00050055986 UniProtKB/TrEMBL
  ENSSSCG00055011586 UniProtKB/TrEMBL
  ENSSSCG00060007868 UniProtKB/TrEMBL
  ENSSSCG00065067549 UniProtKB/TrEMBL
  ENSSSCG00070000695 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007840 ENTREZGENE
  ENSSSCT00000007840.5 UniProtKB/TrEMBL
  ENSSSCT00000043153 ENTREZGENE
  ENSSSCT00000043153.2 UniProtKB/TrEMBL
  ENSSSCT00000062960.2 UniProtKB/TrEMBL
  ENSSSCT00000081840.2 UniProtKB/TrEMBL
  ENSSSCT00000086479.1 UniProtKB/TrEMBL
  ENSSSCT00000096638.1 UniProtKB/TrEMBL
  ENSSSCT00015078263.1 UniProtKB/TrEMBL
  ENSSSCT00015078507.1 UniProtKB/TrEMBL
  ENSSSCT00015078715.1 UniProtKB/TrEMBL
  ENSSSCT00015078985.1 UniProtKB/TrEMBL
  ENSSSCT00015079087.1 UniProtKB/TrEMBL
  ENSSSCT00015079177.1 UniProtKB/TrEMBL
  ENSSSCT00025051872.1 UniProtKB/TrEMBL
  ENSSSCT00025052024.1 UniProtKB/TrEMBL
  ENSSSCT00025052186.1 UniProtKB/TrEMBL
  ENSSSCT00025052350.1 UniProtKB/TrEMBL
  ENSSSCT00025052452.1 UniProtKB/TrEMBL
  ENSSSCT00025052539.1 UniProtKB/TrEMBL
  ENSSSCT00030047100.1 UniProtKB/TrEMBL
  ENSSSCT00035062072.1 UniProtKB/TrEMBL
  ENSSSCT00045001967.1 UniProtKB/TrEMBL
  ENSSSCT00045002024.1 UniProtKB/TrEMBL
  ENSSSCT00045002053.1 UniProtKB/TrEMBL
  ENSSSCT00045002097.1 UniProtKB/TrEMBL
  ENSSSCT00045002118.1 UniProtKB/TrEMBL
  ENSSSCT00045002139.1 UniProtKB/TrEMBL
  ENSSSCT00050076364.1 UniProtKB/TrEMBL
  ENSSSCT00050076371.1 UniProtKB/TrEMBL
  ENSSSCT00050076374.1 UniProtKB/TrEMBL
  ENSSSCT00050076381.1 UniProtKB/TrEMBL
  ENSSSCT00050076385.1 UniProtKB/TrEMBL
  ENSSSCT00050076388.1 UniProtKB/TrEMBL
  ENSSSCT00055022756.1 UniProtKB/TrEMBL
  ENSSSCT00055022869.1 UniProtKB/TrEMBL
  ENSSSCT00055022970.1 UniProtKB/TrEMBL
  ENSSSCT00055023079.1 UniProtKB/TrEMBL
  ENSSSCT00055023151.1 UniProtKB/TrEMBL
  ENSSSCT00055023240.1 UniProtKB/TrEMBL
  ENSSSCT00060010040.1 UniProtKB/TrEMBL
  ENSSSCT00060010046.1 UniProtKB/TrEMBL
  ENSSSCT00060010051.1 UniProtKB/TrEMBL
  ENSSSCT00060010066.1 UniProtKB/TrEMBL
  ENSSSCT00060010070.1 UniProtKB/TrEMBL
  ENSSSCT00060010079.1 UniProtKB/TrEMBL
  ENSSSCT00065092743.1 UniProtKB/TrEMBL
  ENSSSCT00065092757.1 UniProtKB/TrEMBL
  ENSSSCT00065092801.1 UniProtKB/TrEMBL
  ENSSSCT00065092903.1 UniProtKB/TrEMBL
  ENSSSCT00065092940.1 UniProtKB/TrEMBL
  ENSSSCT00070001674.1 UniProtKB/TrEMBL
  ENSSSCT00070001695.1 UniProtKB/TrEMBL
  ENSSSCT00070001739.1 UniProtKB/TrEMBL
  ENSSSCT00070001758.1 UniProtKB/TrEMBL
  ENSSSCT00070001771.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.780 UniProtKB/TrEMBL
InterPro VPS16 UniProtKB/TrEMBL
  Vps16_C UniProtKB/TrEMBL
  Vps16_C_sf UniProtKB/TrEMBL
  Vps16_N UniProtKB/TrEMBL
KEGG Report ssc:100511290 UniProtKB/TrEMBL
NCBI Gene VPS16 ENTREZGENE
PANTHER PTHR12811 UniProtKB/TrEMBL
  VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 16 HOMOLOG UniProtKB/TrEMBL
Pfam Vps16_C UniProtKB/TrEMBL
  Vps16_N UniProtKB/TrEMBL
PIRSF VPS16 UniProtKB/TrEMBL
UniProt A0A287A9L5_PIG UniProtKB/TrEMBL
  A0A287BB69_PIG UniProtKB/TrEMBL
  A0A480V3F0 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SGW4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SGX6_PIG UniProtKB/TrEMBL
  A0A4X1SH02_PIG UniProtKB/TrEMBL
  A0A4X1SH11_PIG UniProtKB/TrEMBL
  A0A4X1SHY7_PIG UniProtKB/TrEMBL
  A0A5G2RDC2_PIG UniProtKB/TrEMBL
  A0A5G2RHC6_PIG UniProtKB/TrEMBL
  A0A8D0PD66_PIG UniProtKB/TrEMBL
  A0A8D0U823 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WFV4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0ZXE3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1GCF5_PIG UniProtKB/TrEMBL
  A0A8D1ZPY7_PIG UniProtKB/TrEMBL
  A0A8D1ZW60_PIG UniProtKB/TrEMBL
  A0A8D2CF28 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FLX9_PIG UniProtKB/TrEMBL
  F1S8A3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:95621 ENTREZGENE