MIR628 (microRNA mir-628) - Rat Genome Database

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Gene: MIR628 (microRNA mir-628) Sus scrofa
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Symbol: MIR628 (Ensembl: ssc-mir-628)
Name: microRNA mir-628 (Ensembl:ssc-mir-628)
RGD ID: 14112615
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 628; ssc-mir-628
RGD Orthologs
Human
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1116,476,859 - 116,476,938 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11116,476,859 - 116,476,938 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21129,013,474 - 129,013,553 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
RISC complex  (IEA)

References
Additional References at PubMed
PMID:16381832   PMID:19917043   PMID:21312241   PMID:25230983   PMID:26227240  


Genomics

Comparative Map Data
MIR628
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1116,476,859 - 116,476,938 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11116,476,859 - 116,476,938 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21129,013,474 - 129,013,553 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MIR628
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381555,372,940 - 55,373,034 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1555,372,940 - 55,373,034 (-)Ensemblhg38GRCh38
GRCh371555,665,138 - 55,665,232 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361553,452,429 - 53,452,523 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1532,553,711 - 32,553,805 (-)NCBICelera
Cytogenetic Map15q21.3NCBI
HuRef1532,490,905 - 32,490,999 (-)NCBIHuRef
CHM1_11555,783,614 - 55,783,708 (-)NCBICHM1_1
T2T-CHM13v2.01553,176,121 - 53,176,215 (-)NCBIT2T-CHM13v2.0
Mir628
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8882,620,496 - 82,620,579 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl882,620,496 - 82,620,579 (+)EnsemblGRCr8
mRatBN7.2873,739,846 - 73,739,929 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl873,739,846 - 73,739,929 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx879,263,232 - 79,263,315 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0877,535,837 - 77,535,920 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0875,373,202 - 75,373,285 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0879,679,458 - 79,679,541 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl879,679,458 - 79,679,541 (+)Ensemblrn6Rnor6.0
Rnor_5.0873,409,615 - 73,409,698 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera868,015,459 - 68,015,542 (-)NCBICelera
Cytogenetic Map8q24NCBI
MIR628
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13020,769,709 - 20,769,803 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3020,769,692 - 20,769,801 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3020,734,096 - 20,734,190 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03020,918,660 - 20,918,754 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.13020,862,522 - 20,862,616 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03020,946,754 - 20,946,848 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03021,078,408 - 21,078,502 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0

Variants

.
Variants in MIR628
1 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
7 2 20 3 4 6 7 20 1 4 1

Sequence


Ensembl Acc Id: ENSSSCT00000020401
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1116,476,859 - 116,476,938 (+)Ensembl
RefSeq Acc Id: NR_035402
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11116,476,859 - 116,476,938 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000018806 Ensembl, ENTREZGENE
Ensembl Transcript ENSSSCT00000020401 ENTREZGENE
miRBase MI0013163 ENTREZGENE
NCBI Gene MIR628 ENTREZGENE
RNAcentral URS00004B83FE RNACentral
  URS000075BE13 RNACentral
  URS0000D561A8 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR628  microRNA mir-628    microRNA 628  Symbol and/or name change 5135510 APPROVED