METAP1D (methionyl aminopeptidase type 1D, mitochondrial) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: METAP1D (methionyl aminopeptidase type 1D, mitochondrial) Sus scrofa
Analyze
Symbol: METAP1D
Name: methionyl aminopeptidase type 1D, mitochondrial
RGD ID: 14101066
Description: ENCODES a protein that exhibits aminopeptidase activity (inferred); hydrolase activity (inferred); initiator methionyl aminopeptidase activity (inferred); INVOLVED IN post-translational protein modification (inferred); proteolysis (inferred); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: methionine aminopeptidase 1D, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1578,098,413 - 78,182,276 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11578,096,701 - 78,182,281 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21587,589,988 - 87,608,658 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
mitochondrion  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074  


Genomics

Comparative Map Data
METAP1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1578,098,413 - 78,182,276 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11578,096,701 - 78,182,281 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21587,589,988 - 87,608,658 (+)NCBISscrofa10.2Sscrofa10.2susScr3
METAP1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382171,999,953 - 172,082,430 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2171,999,943 - 172,082,432 (+)Ensemblhg38GRCh38
GRCh372172,864,860 - 172,947,158 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362172,573,050 - 172,653,833 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2166,481,016 - 166,561,688 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2164,748,720 - 164,825,838 (+)NCBIHuRef
CHM1_12172,871,969 - 172,953,063 (+)NCBICHM1_1
T2T-CHM13v2.02172,486,172 - 172,568,673 (+)NCBIT2T-CHM13v2.0
Metap1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39271,283,625 - 71,355,538 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl271,283,620 - 71,355,538 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38271,453,281 - 71,525,194 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl271,453,276 - 71,525,194 (+)Ensemblmm10GRCm38
MGSCv37271,291,395 - 71,363,248 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36271,254,177 - 71,326,030 (+)NCBIMGSCv36mm8
Celera273,114,690 - 73,189,227 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map242.42NCBI
Metap1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8376,687,149 - 76,759,681 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl376,687,171 - 76,759,655 (+)EnsemblGRCr8
mRatBN7.2356,279,471 - 56,354,518 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl356,279,493 - 56,351,981 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx359,677,641 - 59,749,937 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0368,261,249 - 68,333,545 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0366,022,913 - 66,095,717 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd374,537,507 - 74,609,803 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive381,476,917 - 81,549,253 (+)NCBILyon_Normotensive
Lyon_Hypertensive373,383,116 - 73,455,452 (+)NCBILyon_Hypertensive
F344_StmMcwi354,672,939 - 54,745,237 (+)NCBIF344_StmMcwi
Rnor_6.0358,084,558 - 58,160,748 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl358,084,606 - 58,162,675 (+)Ensemblrn6Rnor6.0
Rnor_5.0364,572,489 - 64,646,109 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4353,758,752 - 53,832,869 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera355,827,089 - 55,899,649 (+)NCBICelera
RGSC_v3.1353,655,130 - 53,728,977 (+)NCBI
Cytogenetic Map3q23NCBI
Metap1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554492,929,483 - 3,016,688 (-)Ensembl
ChiLan1.0NW_0049554492,929,483 - 3,016,103 (-)NCBIChiLan1.0ChiLan1.0
METAP1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21374,683,956 - 74,766,622 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B74,698,929 - 74,781,595 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B59,297,101 - 59,379,867 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B176,755,288 - 176,836,673 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B176,755,294 - 176,836,673 (+)EnsemblpanPan2panpan1.1
METAP1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13616,391,206 - 16,480,055 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3616,390,881 - 16,480,728 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3616,399,894 - 16,488,752 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03616,512,046 - 16,600,902 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3616,511,736 - 16,601,577 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13616,600,000 - 16,688,457 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03616,600,380 - 16,688,825 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03616,703,499 - 16,792,397 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Metap1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303133,670,918 - 133,689,567 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365092,162,717 - 2,243,114 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365092,204,568 - 2,243,470 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
METAP1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11057,496,792 - 57,586,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040141,960,364 - 142,052,563 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Metap1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247879,414,005 - 9,510,902 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247879,413,939 - 9,510,390 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Metap1d
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1548,746,506 - 48,818,860 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in METAP1D
1741 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000017368   ⟹   ENSSSCP00000016903
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1578,098,430 - 78,182,276 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000039058   ⟹   ENSSSCP00000041312
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1578,098,413 - 78,182,276 (+)Ensembl
RefSeq Acc Id: XM_003133473   ⟹   XP_003133521
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11578,148,455 - 78,182,281 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075524   ⟹   XP_020931183
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11578,096,701 - 78,182,281 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075525   ⟹   XP_020931184
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11578,163,620 - 78,182,281 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075526   ⟹   XP_020931185
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11578,143,754 - 78,182,281 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075527   ⟹   XP_020931186
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11578,155,344 - 78,182,281 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075528   ⟹   XP_020931187
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11578,148,689 - 78,182,281 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021075529   ⟹   XP_020931188
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11578,098,426 - 78,182,281 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020931183   ⟸   XM_021075524
- Peptide Label: isoform X2
- UniProtKB: A0A4X1V6P5 (UniProtKB/TrEMBL),   A0A287BQP8 (UniProtKB/TrEMBL),   A0A287ABG5 (UniProtKB/TrEMBL),   A0A480MGQ4 (UniProtKB/TrEMBL),   A0A8D2CF99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931188   ⟸   XM_021075529
- Peptide Label: isoform X3
- UniProtKB: A0A4X1V7J9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931185   ⟸   XM_021075526
- Peptide Label: isoform X4
- UniProtKB: A0A480MGQ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003133521   ⟸   XM_003133473
- Peptide Label: isoform X1
- UniProtKB: A0A8D1EKD3 (UniProtKB/TrEMBL),   A0A8D0ZA42 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931187   ⟸   XM_021075528
- Peptide Label: isoform X3
- UniProtKB: A0A4X1V7J9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931186   ⟸   XM_021075527
- Peptide Label: isoform X3
- UniProtKB: A0A4X1V7J9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020931184   ⟸   XM_021075525
- Peptide Label: isoform X3
- UniProtKB: A0A4X1V7J9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000041312   ⟸   ENSSSCT00000039058
Ensembl Acc Id: ENSSSCP00000016903   ⟸   ENSSSCT00000017368
Protein Domains
Peptidase M24


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000015951 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015006847 UniProtKB/TrEMBL
  ENSSSCG00025036605 UniProtKB/TrEMBL
  ENSSSCG00030016662 UniProtKB/TrEMBL
  ENSSSCG00035026304 UniProtKB/TrEMBL
  ENSSSCG00040043423 UniProtKB/TrEMBL
  ENSSSCG00045029544 UniProtKB/TrEMBL
  ENSSSCG00050006193 UniProtKB/TrEMBL
  ENSSSCG00055002182 UniProtKB/TrEMBL
  ENSSSCG00060048835 UniProtKB/TrEMBL
  ENSSSCG00065068297 UniProtKB/TrEMBL
  ENSSSCG00070021821 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000017368 ENTREZGENE
  ENSSSCT00000017368.5 UniProtKB/TrEMBL
  ENSSSCT00000039058 ENTREZGENE
  ENSSSCT00000039058.3 UniProtKB/TrEMBL
  ENSSSCT00015009080.1 UniProtKB/TrEMBL
  ENSSSCT00015009130.1 UniProtKB/TrEMBL
  ENSSSCT00025049841.1 UniProtKB/TrEMBL
  ENSSSCT00025049878.1 UniProtKB/TrEMBL
  ENSSSCT00030023050.1 UniProtKB/TrEMBL
  ENSSSCT00030023061.1 UniProtKB/TrEMBL
  ENSSSCT00035034690.1 UniProtKB/TrEMBL
  ENSSSCT00035034704.1 UniProtKB/TrEMBL
  ENSSSCT00040058133.1 UniProtKB/TrEMBL
  ENSSSCT00040058266.1 UniProtKB/TrEMBL
  ENSSSCT00045050392.1 UniProtKB/TrEMBL
  ENSSSCT00045050461.1 UniProtKB/TrEMBL
  ENSSSCT00045050591.1 UniProtKB/TrEMBL
  ENSSSCT00050008454.1 UniProtKB/TrEMBL
  ENSSSCT00050008465.1 UniProtKB/TrEMBL
  ENSSSCT00055004101.1 UniProtKB/TrEMBL
  ENSSSCT00055004111.1 UniProtKB/TrEMBL
  ENSSSCT00055004128.1 UniProtKB/TrEMBL
  ENSSSCT00060066321.1 UniProtKB/TrEMBL
  ENSSSCT00060066330.1 UniProtKB/TrEMBL
  ENSSSCT00065093772.1 UniProtKB/TrEMBL
  ENSSSCT00065093779.1 UniProtKB/TrEMBL
  ENSSSCT00065093784.1 UniProtKB/TrEMBL
  ENSSSCT00070044055.1 UniProtKB/TrEMBL
  ENSSSCT00070044161.1 UniProtKB/TrEMBL
  ENSSSCT00070044267.1 UniProtKB/TrEMBL
  ENSSSCT00070044393.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.230.10 UniProtKB/TrEMBL
InterPro Creatinase/aminopeptidase-like UniProtKB/TrEMBL
  Pept_M24 UniProtKB/TrEMBL
  Pept_M24_MAP UniProtKB/TrEMBL
  Pept_M24A_MAP1 UniProtKB/TrEMBL
KEGG Report ssc:100522284 UniProtKB/TrEMBL
NCBI Gene METAP1D ENTREZGENE
PANTHER METHIONINE AMINOPEPTIDASE UniProtKB/TrEMBL
  METHIONINE AMINOPEPTIDASE 1D, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Peptidase_M24 UniProtKB/TrEMBL
PRINTS MAPEPTIDASE UniProtKB/TrEMBL
PROSITE MAP_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF55920 UniProtKB/TrEMBL
UniProt A0A287ABG5 ENTREZGENE, UniProtKB/TrEMBL
  A0A287BQP8 ENTREZGENE
  A0A480MGQ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1V6P5 ENTREZGENE
  A0A4X1V7G1_PIG UniProtKB/TrEMBL
  A0A4X1V7J9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JZJ3_PIG UniProtKB/TrEMBL
  A0A8D0MHA4_PIG UniProtKB/TrEMBL
  A0A8D0ZA42 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EKD3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TTJ0_PIG UniProtKB/TrEMBL
  A0A8D1VRJ6_PIG UniProtKB/TrEMBL
  A0A8D2CF99 ENTREZGENE, UniProtKB/TrEMBL
  F1S085_PIG UniProtKB/TrEMBL
UniProt Secondary A0A287BQP8 UniProtKB/TrEMBL
  A0A4X1V6P5 UniProtKB/TrEMBL
VGNC ID VGNC:96263 ENTREZGENE