METAP1D (methionyl aminopeptidase type 1D, mitochondrial) - Rat Genome Database

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Gene: METAP1D (methionyl aminopeptidase type 1D, mitochondrial) Chlorocebus sabaeus
Analyze
Symbol: METAP1D
Name: methionyl aminopeptidase type 1D, mitochondrial
RGD ID: 18789823
Description: ASSOCIATED WITH genetic disease (ortholog); split hand-foot malformation 5 (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: methionine aminopeptidase 1D, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11057,496,792 - 57,586,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040141,960,364 - 142,052,563 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
METAP1D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11057,496,792 - 57,586,364 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040141,960,364 - 142,052,563 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
METAP1D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382171,999,953 - 172,082,430 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2171,999,943 - 172,082,430 (+)EnsemblGRCh38hg38GRCh38
GRCh372172,864,860 - 172,947,158 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362172,573,050 - 172,653,833 (+)NCBINCBI36Build 36hg18NCBI36
Celera2166,481,016 - 166,561,688 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2164,748,720 - 164,825,838 (+)NCBIHuRef
CHM1_12172,871,969 - 172,953,063 (+)NCBICHM1_1
T2T-CHM13v2.02172,486,172 - 172,568,673 (+)NCBIT2T-CHM13v2.0
Metap1d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39271,283,625 - 71,355,538 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl271,283,620 - 71,355,538 (+)EnsemblGRCm39 Ensembl
GRCm38271,453,281 - 71,525,194 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl271,453,276 - 71,525,194 (+)EnsemblGRCm38mm10GRCm38
MGSCv37271,291,395 - 71,363,248 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36271,254,177 - 71,326,030 (+)NCBIMGSCv36mm8
Celera273,114,690 - 73,189,227 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map242.42NCBI
Metap1d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8376,687,149 - 76,759,681 (+)NCBIGRCr8
mRatBN7.2356,279,471 - 56,354,518 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl356,279,493 - 56,351,981 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx359,677,641 - 59,749,937 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0368,261,249 - 68,333,545 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0366,022,913 - 66,095,717 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0358,084,558 - 58,160,748 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl358,084,606 - 58,162,675 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0364,572,489 - 64,646,109 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4353,758,752 - 53,832,869 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1353,655,130 - 53,728,977 (+)NCBI
Celera355,827,089 - 55,899,649 (+)NCBICelera
Cytogenetic Map3q23NCBI
Metap1d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554492,929,483 - 3,016,688 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554492,929,483 - 3,016,103 (-)NCBIChiLan1.0ChiLan1.0
METAP1D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21374,683,956 - 74,766,622 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B74,698,929 - 74,781,595 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B59,297,101 - 59,379,867 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B176,755,288 - 176,836,673 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B176,755,294 - 176,836,673 (+)Ensemblpanpan1.1panPan2
METAP1D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13616,391,206 - 16,480,055 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3616,390,881 - 16,480,728 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3616,399,894 - 16,488,752 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03616,512,046 - 16,600,902 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3616,511,736 - 16,601,577 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13616,600,000 - 16,688,457 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03616,600,380 - 16,688,825 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03616,703,499 - 16,792,397 (+)NCBIUU_Cfam_GSD_1.0
Metap1d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303133,670,918 - 133,689,567 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365092,162,717 - 2,243,114 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365092,204,568 - 2,243,470 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
METAP1D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1578,098,413 - 78,182,276 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11578,096,701 - 78,182,281 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21587,589,988 - 87,608,658 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Metap1d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247879,414,005 - 9,510,902 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247879,413,939 - 9,510,390 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007965363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_007965363   ⟹   XP_007963554
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11057,496,792 - 57,586,364 (+)NCBI
Vero_WHO_p1.0NW_023666040141,960,364 - 142,052,563 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007963554 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_007963554   ⟸   XM_007965363


Additional Information

Database Acc Id Source(s)
NCBI Gene METAP1D ENTREZGENE