NDUFAF3 (NADH:ubiquinone oxidoreductase complex assembly factor 3) - Rat Genome Database

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Gene: NDUFAF3 (NADH:ubiquinone oxidoreductase complex assembly factor 3) Sus scrofa
Analyze
Symbol: NDUFAF3
Name: NADH:ubiquinone oxidoreductase complex assembly factor 3
RGD ID: 14055006
Description: INVOLVED IN mitochondrial respiratory chain complex I assembly (inferred); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); mitochondrial complex I deficiency (ortholog); FOUND IN mitochondrial inner membrane (inferred); mitochondrion (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,656,948 - 31,659,220 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11331,656,941 - 31,658,087 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,899,945 - 34,901,091 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:17407547   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NDUFAF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,656,948 - 31,659,220 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11331,656,941 - 31,658,087 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,899,945 - 34,901,091 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NDUFAF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,020,452 - 49,023,495 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,020,459 - 49,023,495 (+)Ensemblhg38GRCh38
GRCh37349,057,885 - 49,060,928 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,032,912 - 49,035,932 (+)NCBIBuild 36Build 36hg18NCBI36
Celera349,014,631 - 49,017,650 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,115,773 - 49,118,793 (+)NCBIHuRef
CHM1_1349,010,469 - 49,013,489 (+)NCBICHM1_1
T2T-CHM13v2.0349,048,492 - 49,051,535 (+)NCBIT2T-CHM13v2.0
Ndufaf3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,442,786 - 108,444,635 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,442,736 - 108,444,633 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm389108,565,587 - 108,567,436 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,565,537 - 108,567,434 (-)Ensemblmm10GRCm38
MGSCv379108,468,196 - 108,469,673 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369108,423,968 - 108,425,445 (-)NCBIMGSCv36mm8
Celera9108,177,106 - 108,178,583 (-)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.5NCBI
Ndufaf3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,139,891 - 118,141,723 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8118,139,892 - 118,141,723 (-)EnsemblGRCr8
mRatBN7.28109,261,362 - 109,263,194 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,261,363 - 109,263,194 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8114,879,614 - 114,881,446 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,078,948 - 113,080,780 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,921,588 - 110,923,420 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd8119,027,897 - 119,029,729 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive8121,132,844 - 121,134,676 (-)NCBILyon_Normotensive
Lyon_Hypertensive8119,622,561 - 119,624,393 (-)NCBILyon_Hypertensive
F344_StmMcwi8111,024,636 - 111,026,468 (-)NCBIF344_StmMcwi
Rnor_6.08117,351,628 - 117,353,460 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,351,629 - 117,353,672 (-)Ensemblrn6Rnor6.0
Rnor_5.08116,696,131 - 116,698,175 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48113,611,624 - 113,613,668 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8108,557,136 - 108,558,968 (-)NCBICelera
RGSC_v3.18113,631,358 - 113,632,446 (-)NCBI
Cytogenetic Map8q32NCBI
Ndufaf3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,045,852 - 1,046,594 (+)Ensembl
ChiLan1.0NW_0049555321,045,854 - 1,046,738 (+)NCBIChiLan1.0ChiLan1.0
NDUFAF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,000,312 - 49,002,105 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,005,075 - 49,006,873 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0348,945,667 - 48,947,933 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,026,822 - 50,029,260 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,026,989 - 50,029,260 (+)EnsemblpanPan2panpan1.1
NDUFAF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12040,141,550 - 40,143,207 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2040,141,552 - 40,172,553 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2040,059,735 - 40,061,389 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02040,498,728 - 40,500,382 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2040,498,730 - 40,529,984 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,865,331 - 39,866,985 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02040,269,109 - 40,270,763 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02040,548,619 - 40,550,273 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ndufaf3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560263,986,373 - 63,987,648 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936529747,021 - 748,695 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936529746,620 - 748,145 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NDUFAF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,421,359 - 10,423,626 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,421,996 - 10,423,510 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041156,658,641 - 156,661,226 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ndufaf3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,069,115 - 3,070,675 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247303,069,083 - 3,070,675 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ndufaf3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1899,895,222 - 99,897,265 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in NDUFAF3
9 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 22 3 2 5 14 12 22 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000012449   ⟹   ENSSSCP00000012124
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,656,948 - 31,659,220 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000079232   ⟹   ENSSSCP00000068085
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1331,656,948 - 31,659,219 (+)Ensembl
RefSeq Acc Id: NM_001243606   ⟹   NP_001230535
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11331,656,941 - 31,658,087 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001230535   ⟸   NM_001243606
- UniProtKB: F1SKI6 (UniProtKB/TrEMBL),   A0A4X1SZ90 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000068085   ⟸   ENSSSCT00000079232
Ensembl Acc Id: ENSSSCP00000012124   ⟸   ENSSSCT00000012449


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000011371 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015070657 UniProtKB/TrEMBL
  ENSSSCG00025051244 UniProtKB/TrEMBL
  ENSSSCG00030050717 UniProtKB/TrEMBL
  ENSSSCG00035075582 UniProtKB/TrEMBL
  ENSSSCG00040049338 UniProtKB/TrEMBL
  ENSSSCG00045031598 UniProtKB/TrEMBL
  ENSSSCG00050017574 UniProtKB/TrEMBL
  ENSSSCG00055015093 UniProtKB/TrEMBL
  ENSSSCG00060054107 UniProtKB/TrEMBL
  ENSSSCG00065078643 UniProtKB/TrEMBL
  ENSSSCG00070005023 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000012449 ENTREZGENE
  ENSSSCT00000012449.5 UniProtKB/TrEMBL
  ENSSSCT00000079232.2 UniProtKB/TrEMBL
  ENSSSCT00015094672.1 UniProtKB/TrEMBL
  ENSSSCT00015094772.1 UniProtKB/TrEMBL
  ENSSSCT00015094847.1 UniProtKB/TrEMBL
  ENSSSCT00025070010.1 UniProtKB/TrEMBL
  ENSSSCT00025070065.1 UniProtKB/TrEMBL
  ENSSSCT00030070698.1 UniProtKB/TrEMBL
  ENSSSCT00030070716.1 UniProtKB/TrEMBL
  ENSSSCT00035102739.1 UniProtKB/TrEMBL
  ENSSSCT00035102748.1 UniProtKB/TrEMBL
  ENSSSCT00040066458.1 UniProtKB/TrEMBL
  ENSSSCT00040066537.1 UniProtKB/TrEMBL
  ENSSSCT00040066604.1 UniProtKB/TrEMBL
  ENSSSCT00045053868.1 UniProtKB/TrEMBL
  ENSSSCT00045053911.1 UniProtKB/TrEMBL
  ENSSSCT00050023879.1 UniProtKB/TrEMBL
  ENSSSCT00050023899.1 UniProtKB/TrEMBL
  ENSSSCT00050023922.1 UniProtKB/TrEMBL
  ENSSSCT00055029828.1 UniProtKB/TrEMBL
  ENSSSCT00055029865.1 UniProtKB/TrEMBL
  ENSSSCT00060073646.1 UniProtKB/TrEMBL
  ENSSSCT00060073653.1 UniProtKB/TrEMBL
  ENSSSCT00065109134.1 UniProtKB/TrEMBL
  ENSSSCT00065109137.1 UniProtKB/TrEMBL
  ENSSSCT00070009514.1 UniProtKB/TrEMBL
  ENSSSCT00070009517.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1230.10 UniProtKB/TrEMBL
InterPro MTH938-like_sf UniProtKB/TrEMBL
  NDUF3 UniProtKB/TrEMBL
  NDUFAF3/AAMDC UniProtKB/TrEMBL
KEGG Report ssc:100156018 UniProtKB/TrEMBL
NCBI Gene NDUFAF3 ENTREZGENE
PANTHER NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 3 UniProtKB/TrEMBL
  PTHR21192 UniProtKB/TrEMBL
Pfam DUF498 UniProtKB/TrEMBL
Superfamily-SCOP SSF64076 UniProtKB/TrEMBL
UniProt A0A4X1SXX8_PIG UniProtKB/TrEMBL
  A0A4X1SZ90 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1F0R3_PIG UniProtKB/TrEMBL
  A0A8D1LLR4_PIG UniProtKB/TrEMBL
  A0A8D1QND7_PIG UniProtKB/TrEMBL
  F1SKI6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A5G2QVD3 UniProtKB/TrEMBL
VGNC ID VGNC:90640 ENTREZGENE