WNT16 (Wnt family member 16) - Rat Genome Database

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Pathways
Gene: WNT16 (Wnt family member 16) Sus scrofa
Analyze
Symbol: WNT16
Name: Wnt family member 16
RGD ID: 14054728
Description: ENCODES a protein that exhibits signaling receptor binding (inferred); INVOLVED IN bone remodeling (ortholog); cardiac epithelial to mesenchymal transition (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; FOUND IN cytoplasm (inferred); extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein Wnt-16
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1825,621,794 - 25,633,731 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11825,621,802 - 25,633,730 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21827,226,372 - 27,238,355 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
WNT16
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1825,621,794 - 25,633,731 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11825,621,802 - 25,633,730 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21827,226,372 - 27,238,355 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WNT16
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387121,325,367 - 121,341,104 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7121,325,367 - 121,341,104 (+)Ensemblhg38GRCh38
GRCh377120,965,421 - 120,981,158 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367120,752,657 - 120,768,394 (+)NCBIBuild 36Build 36hg18NCBI36
Build 347120,563,040 - 120,575,108NCBI
Celera7115,774,608 - 115,790,350 (+)NCBICelera
Cytogenetic Map7q31.31NCBI
HuRef7115,328,649 - 115,344,394 (+)NCBIHuRef
CHM1_17120,898,727 - 120,914,470 (+)NCBICHM1_1
T2T-CHM13v2.07122,640,682 - 122,656,420 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27120,360,161 - 120,375,904 (+)NCBI
Wnt16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39622,288,179 - 22,298,521 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl622,288,226 - 22,298,521 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38622,288,178 - 22,298,522 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl622,288,227 - 22,298,522 (+)Ensemblmm10GRCm38
MGSCv37622,238,227 - 22,248,522 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36622,238,231 - 22,248,523 (+)NCBIMGSCv36mm8
Celera622,342,361 - 22,352,644 (+)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map69.22NCBI
Wnt16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8451,786,728 - 51,797,137 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl451,786,660 - 51,816,568 (+)EnsemblGRCr8
mRatBN7.2450,820,968 - 50,831,380 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl450,820,968 - 50,831,380 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx455,806,524 - 55,816,918 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0451,727,603 - 51,737,997 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0450,153,174 - 50,163,575 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd453,550,299 - 53,560,707 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive450,957,516 - 50,967,924 (+)NCBILyon_Normotensive
Lyon_Hypertensive451,545,002 - 51,555,410 (+)NCBILyon_Hypertensive
F344_StmMcwi451,358,200 - 51,368,601 (+)NCBIF344_StmMcwi
Rnor_6.0449,369,246 - 49,388,156 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl449,369,296 - 49,379,703 (+)Ensemblrn6Rnor6.0
Rnor_5.0449,160,228 - 49,178,195 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4448,609,677 - 48,620,317 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera446,027,411 - 46,037,822 (+)NCBICelera
Cytogenetic Map4q22NCBI
Wnt16
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554793,065,295 - 3,077,260 (+)Ensembl
ChiLan1.0NW_0049554793,065,312 - 3,077,260 (+)NCBIChiLan1.0ChiLan1.0
WNT16
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26158,199,273 - 158,223,862 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1710,209,528 - 10,234,117 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07113,338,322 - 113,354,002 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17126,025,337 - 126,041,057 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7126,025,337 - 126,041,057 (+)EnsemblpanPan2panpan1.1
WNT16
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11459,388,034 - 59,404,812 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1459,387,846 - 59,396,622 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1458,802,351 - 58,811,862 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01459,417,524 - 59,431,676 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1459,422,183 - 59,431,814 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11459,515,494 - 59,524,990 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.01459,513,424 - 59,528,123 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Wnt16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511848,336,483 - 48,347,731 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366053,856,917 - 3,867,423 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366053,855,640 - 3,867,166 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WNT16
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12190,143,097 - 90,159,628 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2190,147,692 - 90,157,750 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604213,402,984 - 13,418,747 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wnt16
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478314,752,643 - 14,762,925 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478314,749,318 - 14,762,933 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Wnt16
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16116,871,037 - 116,885,865 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in WNT16
300 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 1 5 3 2 8 7 5 1 5 1

Sequence


Ensembl Acc Id: ENSSSCT00000018091   ⟹   ENSSSCP00000017601
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1825,621,794 - 25,633,731 (-)Ensembl
RefSeq Acc Id: XM_003134736   ⟹   XP_003134784
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11825,621,802 - 25,633,730 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003134784   ⟸   XM_003134736
- UniProtKB: F1SJF8 (UniProtKB/TrEMBL),   A0A8D0PVA1 (UniProtKB/TrEMBL),   A0A4X1VXM0 (UniProtKB/TrEMBL),   A0A8D1YXT6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000017601   ⟸   ENSSSCT00000018091


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016617 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015071447 UniProtKB/TrEMBL
  ENSSSCG00025069331 UniProtKB/TrEMBL
  ENSSSCG00030072647 UniProtKB/TrEMBL
  ENSSSCG00035011486 UniProtKB/TrEMBL
  ENSSSCG00040018173 UniProtKB/TrEMBL
  ENSSSCG00045039234 UniProtKB/TrEMBL
  ENSSSCG00050046907 UniProtKB/TrEMBL
  ENSSSCG00055010052 UniProtKB/TrEMBL
  ENSSSCG00060054061 UniProtKB/TrEMBL
  ENSSSCG00065047649 UniProtKB/TrEMBL
  ENSSSCG00070028485 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018091 ENTREZGENE
  ENSSSCT00000018091.5 UniProtKB/TrEMBL
  ENSSSCT00015095843.1 UniProtKB/TrEMBL
  ENSSSCT00025095263.1 UniProtKB/TrEMBL
  ENSSSCT00030101721.1 UniProtKB/TrEMBL
  ENSSSCT00035014426.1 UniProtKB/TrEMBL
  ENSSSCT00040024547.1 UniProtKB/TrEMBL
  ENSSSCT00045068283.1 UniProtKB/TrEMBL
  ENSSSCT00050063868.1 UniProtKB/TrEMBL
  ENSSSCT00055019663.1 UniProtKB/TrEMBL
  ENSSSCT00060073578.1 UniProtKB/TrEMBL
  ENSSSCT00065065195.1 UniProtKB/TrEMBL
  ENSSSCT00070057122.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2460.20 UniProtKB/TrEMBL
InterPro Wnt UniProtKB/TrEMBL
  Wnt16 UniProtKB/TrEMBL
  Wnt_C UniProtKB/TrEMBL
  Wnt_CS UniProtKB/TrEMBL
KEGG Report ssc:100511484 UniProtKB/TrEMBL
NCBI Gene WNT16 ENTREZGENE
PANTHER PROTEIN WNT-16 UniProtKB/TrEMBL
  PTHR12027 UniProtKB/TrEMBL
Pfam wnt UniProtKB/TrEMBL
PRINTS WNT16PROTEIN UniProtKB/TrEMBL
  WNTPROTEIN UniProtKB/TrEMBL
PROSITE WNT1 UniProtKB/TrEMBL
SMART WNT1 UniProtKB/TrEMBL
UniProt A0A4X1VXM0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PVA1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1CLR6_PIG UniProtKB/TrEMBL
  A0A8D1YXT6 ENTREZGENE, UniProtKB/TrEMBL
  F1SJF8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94967 ENTREZGENE