RBM12 (RNA binding motif protein 12) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Pathways
Gene: RBM12 (RNA binding motif protein 12) Sus scrofa
Analyze
Symbol: RBM12
Name: RNA binding motif protein 12
RGD ID: 14053639
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); ASSOCIATED WITH psychotic disorder (ortholog); schizophrenia 19 (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RNA-binding protein 12
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,982,619 - 38,989,656 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11738,980,072 - 38,997,304 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,334,848 - 44,347,877 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RBM12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,982,619 - 38,989,656 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11738,980,072 - 38,997,304 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,334,848 - 44,347,877 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,648,925 - 35,664,900 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,648,925 - 35,664,956 (-)Ensemblhg38GRCh38
GRCh372034,236,847 - 34,252,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,700,291 - 33,716,252 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342033,700,294 - 33,716,252NCBI
Celera2030,985,171 - 31,001,132 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2031,014,260 - 31,030,291 (-)NCBIHuRef
CHM1_12034,138,481 - 34,154,510 (-)NCBICHM1_1
T2T-CHM13v2.02037,369,900 - 37,385,875 (-)NCBIT2T-CHM13v2.0
Rbm12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,933,876 - 155,953,847 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,933,878 - 155,953,898 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382156,094,882 - 156,111,965 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,091,958 - 156,111,978 (-)Ensemblmm10GRCm38
MGSCv372155,920,618 - 155,937,701 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362155,786,323 - 155,803,368 (-)NCBIMGSCv36mm8
Celera2162,030,486 - 162,047,562 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.35NCBI
Rbm12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83165,069,744 - 165,089,994 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3165,042,878 - 165,090,021 (-)EnsemblGRCr8
mRatBN7.23144,609,661 - 144,629,911 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,611,623 - 144,629,915 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3148,478,352 - 148,495,682 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,095,624 - 157,112,956 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,835,150 - 154,852,481 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd3163,167,658 - 163,187,915 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive3170,135,683 - 170,155,933 (-)NCBILyon_Normotensive
Lyon_Hypertensive3161,995,557 - 162,015,807 (-)NCBILyon_Hypertensive
F344_StmMcwi3143,005,064 - 143,025,321 (-)NCBIF344_StmMcwi
Rnor_6.03151,616,038 - 151,658,427 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,616,037 - 151,625,644 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl3152,176,095 - 152,179,193 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl3152,150,152 - 152,159,749 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl3151,641,095 - 151,658,417 (-)Ensemblrn6Rnor6.0
Rnor_5.03157,980,656 - 158,023,043 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43146,504,101 - 146,521,424 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3143,334,355 - 143,351,678 (-)NCBICelera
Cytogenetic Map3q42NCBI
RBM12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,356,639 - 41,395,635 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,349,742 - 41,388,722 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,951,508 - 31,990,489 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12033,069,750 - 33,108,547 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2033,069,932 - 33,108,547 (-)EnsemblpanPan2panpan1.1
RBM12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,577,335 - 24,589,731 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,554,636 - 24,589,731 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2424,222,464 - 24,234,844 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02425,269,924 - 25,282,307 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2425,246,568 - 25,282,307 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,556,247 - 24,568,643 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,651,278 - 24,663,675 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02425,090,711 - 25,103,108 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cpne1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,548,911 - 173,583,795 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,174,776 - 5,177,614 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365615,195,727 - 5,200,446 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,165,772 - 5,200,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103216195
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,552,817 - 56,590,661 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,551,035 - 56,590,691 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660872,894,760 - 2,932,582 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248423,777,228 - 3,789,044 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248423,777,208 - 3,789,044 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rbm12
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15135,457,432 - 135,474,801 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in RBM12
96 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_003483946   ⟹   XP_003483994
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,997,273 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005672896   ⟹   XP_005672953
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,997,304 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013985324   ⟹   XP_013840778
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,996,130 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013985325   ⟹   XP_013840779
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,997,257 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021078265   ⟹   XP_020933924
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,997,282 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021078266   ⟹   XP_020933925
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11738,980,072 - 38,997,273 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005672953   ⟸   XM_005672896
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933924   ⟸   XM_021078265
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020933925   ⟸   XM_021078266
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003483994   ⟸   XM_003483946
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013840779   ⟸   XM_013985325
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013840778   ⟸   XM_013985324
- UniProtKB: A0A4X1TBC0 (UniProtKB/TrEMBL),   A0A480KU49 (UniProtKB/TrEMBL),   A0A8D1FPC7 (UniProtKB/TrEMBL),   A0A8D1WLB8 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000047420 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015057102 UniProtKB/TrEMBL
  ENSSSCG00025037201 UniProtKB/TrEMBL
  ENSSSCG00030037881 UniProtKB/TrEMBL
  ENSSSCG00040062295 UniProtKB/TrEMBL
  ENSSSCG00045012616 UniProtKB/TrEMBL
  ENSSSCG00050067962 UniProtKB/TrEMBL
  ENSSSCG00060069808 UniProtKB/TrEMBL
  ENSSSCG00070007853 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000028045.4 UniProtKB/TrEMBL
  ENSSSCT00000066439 ENTREZGENE
  ENSSSCT00000066439.2 UniProtKB/TrEMBL
  ENSSSCT00000089234.2 UniProtKB/TrEMBL
  ENSSSCT00015076066.1 UniProtKB/TrEMBL
  ENSSSCT00015076100.1 UniProtKB/TrEMBL
  ENSSSCT00015076113.1 UniProtKB/TrEMBL
  ENSSSCT00025050618.1 UniProtKB/TrEMBL
  ENSSSCT00025050769.1 UniProtKB/TrEMBL
  ENSSSCT00030052730.1 UniProtKB/TrEMBL
  ENSSSCT00030052836.1 UniProtKB/TrEMBL
  ENSSSCT00040085627.1 UniProtKB/TrEMBL
  ENSSSCT00040085671.1 UniProtKB/TrEMBL
  ENSSSCT00045021440.1 UniProtKB/TrEMBL
  ENSSSCT00045021563.1 UniProtKB/TrEMBL
  ENSSSCT00050092723.1 UniProtKB/TrEMBL
  ENSSSCT00050092766.1 UniProtKB/TrEMBL
  ENSSSCT00060095297.1 UniProtKB/TrEMBL
  ENSSSCT00060095510.1 UniProtKB/TrEMBL
  ENSSSCT00070015377.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro ESRP UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM12_RRM1 UniProtKB/TrEMBL
  RBM12_RRM2 UniProtKB/TrEMBL
  RBM12_RRM3 UniProtKB/TrEMBL
  RBM12_RRM4 UniProtKB/TrEMBL
  RBM12_RRM5 UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
KEGG Report ssc:100157350 UniProtKB/TrEMBL
NCBI Gene RBM12 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A480KU49 ENTREZGENE
  A0A4X1TBC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FPC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WLB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1WLD4_PIG UniProtKB/TrEMBL
  I3LLW0_PIG UniProtKB/TrEMBL
UniProt Secondary A0A480KU49 UniProtKB/TrEMBL
  A0A5G2QW21 UniProtKB/TrEMBL