Rbm12 (RNA binding motif protein 12) - Rat Genome Database

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Gene: Rbm12 (RNA binding motif protein 12) Mus musculus
Analyze
Symbol: Rbm12
Name: RNA binding motif protein 12
RGD ID: 1621471
MGI Page MGI
Description: Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleoplasm. Is expressed in central nervous system and sensory organ. Human ortholog(s) of this gene implicated in schizophrenia 19. Orthologous to human RBM12 (RNA binding motif protein 12).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730420G12Rik; 9430070C08Rik; AI852903; MGC30712; MGC38279; mKIAA0765; RNA-binding motif protein 12; RNA-binding protein 12; S; SH3/WW domain anchor protein in the nucleus; SWAN
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,933,876 - 155,953,847 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,933,878 - 155,953,898 (-)EnsemblGRCm39 Ensembl
GRCm382156,094,882 - 156,111,965 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,091,958 - 156,111,978 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,920,618 - 155,937,701 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,786,323 - 155,803,368 (-)NCBIMGSCv36mm8
Celera2162,030,486 - 162,047,562 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11471062   PMID:12466851   PMID:12477932   PMID:14621295   PMID:15489334   PMID:15769905  
PMID:15782199   PMID:16033648   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635   PMID:22384391   PMID:30550785   PMID:32325033  


Genomics

Comparative Map Data
Rbm12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392155,933,876 - 155,953,847 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2155,933,878 - 155,953,898 (-)EnsemblGRCm39 Ensembl
GRCm382156,094,882 - 156,111,965 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2156,091,958 - 156,111,978 (-)EnsemblGRCm38mm10GRCm38
MGSCv372155,920,618 - 155,937,701 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362155,786,323 - 155,803,368 (-)NCBIMGSCv36mm8
Celera2162,030,486 - 162,047,562 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map277.35NCBI
RBM12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382035,648,925 - 35,664,900 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2035,648,925 - 35,664,956 (-)EnsemblGRCh38hg38GRCh38
GRCh372034,236,847 - 34,252,822 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362033,700,291 - 33,716,252 (-)NCBINCBI36Build 36hg18NCBI36
Build 342033,700,294 - 33,716,252NCBI
Celera2030,985,171 - 31,001,132 (-)NCBICelera
Cytogenetic Map20q11.22NCBI
HuRef2031,014,260 - 31,030,291 (-)NCBIHuRef
CHM1_12034,138,481 - 34,154,510 (-)NCBICHM1_1
T2T-CHM13v2.02037,369,900 - 37,385,875 (-)NCBIT2T-CHM13v2.0
Rbm12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83165,069,744 - 165,089,994 (-)NCBIGRCr8
mRatBN7.23144,609,661 - 144,629,911 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3144,588,995 - 144,598,636 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl3144,611,623 - 144,629,915 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3148,478,352 - 148,495,682 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03157,095,624 - 157,112,956 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03154,835,150 - 154,852,481 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03151,616,038 - 151,658,427 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,616,037 - 151,625,644 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3152,176,095 - 152,179,193 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3152,150,152 - 152,159,749 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl3151,641,095 - 151,658,417 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03157,980,656 - 158,023,043 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43146,504,101 - 146,521,424 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3143,334,355 - 143,351,678 (-)NCBICelera
Cytogenetic Map3q42NCBI
RBM12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,356,639 - 41,395,635 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12041,349,742 - 41,388,722 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02031,951,508 - 31,990,489 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12033,069,750 - 33,108,547 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2033,069,932 - 33,108,547 (-)Ensemblpanpan1.1panPan2
RBM12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12424,577,335 - 24,589,731 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2424,554,636 - 24,589,731 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2424,222,464 - 24,234,844 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02425,269,924 - 25,282,307 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2425,246,568 - 25,282,307 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12424,556,247 - 24,568,643 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02424,651,278 - 24,663,675 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02425,090,711 - 25,103,108 (-)NCBIUU_Cfam_GSD_1.0
Rbm12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640173,548,911 - 173,583,795 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365615,174,776 - 5,177,614 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365615,195,727 - 5,200,446 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365615,165,772 - 5,200,638 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1738,982,619 - 38,989,656 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11738,980,072 - 38,997,304 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21744,334,848 - 44,347,877 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBM12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1256,552,817 - 56,590,661 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl256,551,035 - 56,590,691 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660872,894,760 - 2,932,582 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248423,777,228 - 3,789,044 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248423,777,208 - 3,789,044 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbm12
628 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2468
Count of miRNA genes:647
Interacting mature miRNAs:820
Transcripts:ENSMUST00000059647, ENSMUST00000109604, ENSMUST00000128499, ENSMUST00000131377, ENSMUST00000138068
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
4141033Wg2d_mweight gain in high growth mice 2d (mouse)Not determined143773445160303008Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
13504830Bacsq1_mbaculum shape QTL 1 (mouse)2145716184161016184Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1357862Epfq1_mepididymal fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1357772Scfq1_msubcutaneous fat pad weight QTL 1 (mouse)Not determined2151640941162737074Mouse
1558842Tailq2_mtail length QTL 2 (mouse)Not determined2151640941162737074Mouse
10412080Hylaq2_mHyperlocomotor activity related QTL 2 (mouse)Not determined2151640941164119146Mouse
12910520Scgq3_mspontaneous crescentic glomerulonephritis QTL 3 (mouse)2151709273174389124Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
13825247Agoc2_magouti coat color QTL 2 (mouse)2151841920159841920Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1558852Gnf2_mgrowth and fatness 2 (mouse)Not determined2152699221162197085Mouse
1558867Gnf3_mgrowth and fatness 3 (mouse)Not determined2152699221169117924Mouse
13524521Bodwtq2_mbody wweight QTL 2 (mouse)2153456184156386184Mouse
1301588Hrec_mhemotopoietic response to early cytokines (mouse)Not determined2154553217159428450Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse

Markers in Region
BB099775  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,092,173 - 156,092,274UniSTSGRCm38
MGSCv372155,917,909 - 155,918,010UniSTSGRCm37
Celera2162,027,777 - 162,027,878UniSTS
Cytogenetic Map2H2UniSTS
Whitehead/MRC_RH21823.33UniSTS
Rbm12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,095,946 - 156,096,600UniSTSGRCm38
MGSCv372155,921,682 - 155,922,336UniSTSGRCm37
Celera2162,031,550 - 162,032,206UniSTS
Cytogenetic Map2H2UniSTS
cM Map2 UniSTS
AI852903  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,094,849 - 156,094,995UniSTSGRCm38
MGSCv372155,920,585 - 155,920,731UniSTSGRCm37
Celera2162,030,453 - 162,030,599UniSTS
Cytogenetic Map2H2UniSTS
Whitehead/MRC_RH21823.02UniSTS
ECD04598  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,097,582 - 156,098,341UniSTSGRCm38
MGSCv372155,923,318 - 155,924,077UniSTSGRCm37
Celera2162,033,188 - 162,033,947UniSTS
Cytogenetic Map2H2UniSTS
REN58606  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,096,840 - 156,097,082UniSTSGRCm38
MGSCv372155,922,576 - 155,922,818UniSTSGRCm37
Celera2162,032,446 - 162,032,688UniSTS
Cytogenetic Map2H2UniSTS
REN58605  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382156,096,592 - 156,096,846UniSTSGRCm38
MGSCv372155,922,328 - 155,922,582UniSTSGRCm37
Celera2162,032,198 - 162,032,452UniSTS
Cytogenetic Map2H2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_029397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_170598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF345334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF393215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF393216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000059647   ⟹   ENSMUSP00000050461
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,933,878 - 155,953,876 (-)Ensembl
GRCm38.p6 Ensembl2156,091,958 - 156,111,956 (-)Ensembl
RefSeq Acc Id: ENSMUST00000109604   ⟹   ENSMUSP00000105233
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,933,878 - 155,953,876 (-)Ensembl
GRCm38.p6 Ensembl2156,091,958 - 156,111,956 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128499   ⟹   ENSMUSP00000118067
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,939,841 - 155,953,898 (-)Ensembl
GRCm38.p6 Ensembl2156,097,921 - 156,111,978 (-)Ensembl
RefSeq Acc Id: ENSMUST00000131377   ⟹   ENSMUSP00000120731
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,939,405 - 155,953,836 (-)Ensembl
GRCm38.p6 Ensembl2156,097,485 - 156,111,916 (-)Ensembl
RefSeq Acc Id: ENSMUST00000138068   ⟹   ENSMUSP00000119519
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2155,939,870 - 155,953,881 (-)Ensembl
GRCm38.p6 Ensembl2156,097,950 - 156,111,961 (-)Ensembl
RefSeq Acc Id: NM_029397   ⟹   NP_083673
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,933,876 - 155,953,847 (-)NCBI
GRCm382156,094,882 - 156,111,965 (-)ENTREZGENE
MGSCv372155,920,618 - 155,937,701 (-)RGD
Celera2162,030,486 - 162,047,562 (-)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_170598   ⟹   NP_733486
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392155,933,876 - 155,953,847 (-)NCBI
GRCm382156,094,882 - 156,111,965 (-)ENTREZGENE
MGSCv372155,920,618 - 155,937,701 (-)RGD
Celera2162,030,486 - 162,047,562 (-)RGD
cM Map2 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_083673   ⟸   NM_029397
- UniProtKB: Q8R302 (UniProtKB/Swiss-Prot),   Q8K373 (UniProtKB/Swiss-Prot),   Q7TT14 (UniProtKB/Swiss-Prot),   Q3TKT7 (UniProtKB/Swiss-Prot),   B6ICZ5 (UniProtKB/Swiss-Prot),   Q9CS80 (UniProtKB/Swiss-Prot),   Q8R4X3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_733486   ⟸   NM_170598
- UniProtKB: Q8R302 (UniProtKB/Swiss-Prot),   Q8K373 (UniProtKB/Swiss-Prot),   Q7TT14 (UniProtKB/Swiss-Prot),   Q3TKT7 (UniProtKB/Swiss-Prot),   B6ICZ5 (UniProtKB/Swiss-Prot),   Q9CS80 (UniProtKB/Swiss-Prot),   Q8R4X3 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000050461   ⟸   ENSMUST00000059647
RefSeq Acc Id: ENSMUSP00000119519   ⟸   ENSMUST00000138068
RefSeq Acc Id: ENSMUSP00000120731   ⟸   ENSMUST00000131377
RefSeq Acc Id: ENSMUSP00000105233   ⟸   ENSMUST00000109604
RefSeq Acc Id: ENSMUSP00000118067   ⟸   ENSMUST00000128499
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R4X3-F1-model_v2 AlphaFold Q8R4X3 1-992 view protein structure

Promoters
RGD ID:6832279
Promoter ID:MM_KWN:32596
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver
Transcripts:UC008NME.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362155,922,471 - 155,923,522 (-)MPROMDB
RGD ID:6832284
Promoter ID:MM_KWN:32597
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000079312,   ENSMUST00000109604,   NM_170588,   NM_170590,   OTTMUST00000038404,   OTTMUST00000038405,   OTTMUST00000044512,   OTTMUST00000050135,   OTTMUST00000060772,   OTTMUST00000060773,   OTTMUST00000060774,   OTTMUST00000060775,   OTTMUST00000060776,   OTTMUST00000060782,   OTTMUST00000060783,   OTTMUST00000060784
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362155,937,346 - 155,937,846 (-)MPROMDB
RGD ID:6879396
Promoter ID:EPDNEW_M3149
Type:initiation region
Name:Rbm12_1
Description:Mus musculus RNA binding motif protein 12 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382156,111,922 - 156,111,982EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922960 AgrOrtholog
Ensembl Genes ENSMUSG00000089824 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000059647 ENTREZGENE
  ENSMUST00000059647.12 UniProtKB/Swiss-Prot
  ENSMUST00000109604 ENTREZGENE
  ENSMUST00000109604.9 UniProtKB/Swiss-Prot
  ENSMUST00000128499.2 UniProtKB/TrEMBL
  ENSMUST00000131377.8 UniProtKB/TrEMBL
  ENSMUST00000138068.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM12_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM12_RRM2 UniProtKB/Swiss-Prot
  RBM12_RRM3 UniProtKB/Swiss-Prot
  RBM12_RRM4 UniProtKB/Swiss-Prot
  RBM12_RRM5 UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
KEGG Report mmu:75710 UniProtKB/Swiss-Prot
MGD MGI:1922960 ENTREZGENE
NCBI Gene 75710 ENTREZGENE
PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA-BINDING PROTEIN 12 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot
PhenoGen Rbm12 PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot
SMART RRM UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B6ICZ5 ENTREZGENE
  B7ZCP9_MOUSE UniProtKB/TrEMBL
  B7ZCQ0_MOUSE UniProtKB/TrEMBL
  B7ZCQ1_MOUSE UniProtKB/TrEMBL
  Q3TKT7 ENTREZGENE
  Q7TT14 ENTREZGENE
  Q8K373 ENTREZGENE
  Q8R302 ENTREZGENE
  Q8R4X3 ENTREZGENE
  Q9CS80 ENTREZGENE
  RBM12_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary B6ICZ5 UniProtKB/Swiss-Prot
  Q3TKT7 UniProtKB/Swiss-Prot
  Q7TT14 UniProtKB/Swiss-Prot
  Q8K373 UniProtKB/Swiss-Prot
  Q8R302 UniProtKB/Swiss-Prot
  Q9CS80 UniProtKB/Swiss-Prot